Experiment set3IT026 for Pseudomonas simiae WCS417

Compare to:

Uridine carbon source

200 most important genes:

  gene name fitness t score description  
PS417_01575 -9.4 -5.6 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PS417_23805 -7.8 -5.4 acetolactate synthase 3 regulatory subunit compare
PS417_01855 -7.4 -4.7 phosphoribosyl-AMP cyclohydrolase compare
PS417_18560 -7.1 -8.1 N-(5'-phosphoribosyl)anthranilate isomerase compare
PS417_02510 -6.7 -9.2 ATP phosphoribosyltransferase regulatory subunit compare
PS417_18585 -6.6 -6.4 3-isopropylmalate dehydrogenase compare
PS417_18595 -6.5 -5.2 3-isopropylmalate dehydratase compare
PS417_25720 -6.3 -9.7 anthranilate synthase component II compare
PS417_04415 -6.3 -8.6 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PS417_25725 -6.1 -17.4 anthranilate synthase component I compare
PS417_27040 -6.0 -3.4 3-phosphoglycerate dehydrogenase compare
PS417_23800 -6.0 -12.1 ketol-acid reductoisomerase compare
PS417_23545 -5.9 -4.0 gamma-glutamyl kinase compare
PS417_26740 -5.6 -8.2 homoserine acetyltransferase compare
PS417_16465 -5.6 -10.0 sirohydrochlorin ferrochelatase compare
PS417_26745 -5.4 -6.4 methionine biosynthesis protein MetW compare
PS417_04420 -5.2 -11.0 histidinol dehydrogenase compare
PS417_24745 -5.1 -6.0 gamma-glutamyl phosphate reductase compare
PS417_12855 -4.9 -5.7 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_18600 -4.8 -3.2 isopropylmalate isomerase compare
PS417_23810 -4.8 -11.9 acetolactate synthase 3 catalytic subunit compare
PS417_00180 -4.7 -4.6 tryptophan synthase subunit alpha compare
PS417_23995 -4.7 -1.9 preprotein translocase subunit SecG compare
PS417_22690 -4.6 -5.5 phosphogluconate dehydratase compare
PS417_01565 -4.5 -3.8 imidazole glycerol phosphate synthase compare
PS417_05595 -4.5 -9.4 ornithine carbamoyltransferase compare
PS417_01850 -4.3 -8.9 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PS417_18530 -4.3 -5.1 O-succinylhomoserine sulfhydrylase compare
PS417_00185 -4.2 -5.7 tryptophan synthase subunit beta compare
PS417_02005 -4.2 -13.5 glutamate synthase compare
PS417_18395 -4.1 -4.9 D-ribose ABC transporter, permease component RbsC (from data) compare
PS417_27195 -4.1 -2.2 N-acetylglutamate synthase compare
PS417_01580 -3.9 -2.0 imidazole glycerol phosphate synthase compare
PS417_25715 -3.9 -5.0 anthranilate phosphoribosyltransferase compare
PS417_23110 -3.9 -7.4 2-isopropylmalate synthase compare
PS417_28220 -3.8 -3.8 LysR family transcriptional regulator compare
PS417_12290 -3.8 -9.1 sulfite reductase compare
PS417_21035 -3.7 -10.0 multidrug transporter compare
PS417_02415 -3.6 -5.9 phosphoserine phosphatase compare
PS417_01605 -3.6 -3.4 phosphoglycerate mutase compare
PS417_26730 -3.5 -2.0 pyrroline-5-carboxylate reductase compare
PS417_20125 -3.5 -4.6 phosphoribosylglycinamide formyltransferase compare
PS417_02000 -3.4 -15.7 glutamate synthase compare
PS417_24155 -3.4 -4.6 ATP-binding protein compare
PS417_27835 -3.3 -6.9 endoribonuclease compare
PS417_18400 -3.2 -4.1 D-ribose ABC transporter, ATPase component RbsA (from data) compare
PS417_08125 -2.8 -2.2 prephenate dehydratase compare
PS417_25710 -2.7 -2.5 indole-3-glycerol-phosphate synthase compare
PS417_03925 -2.6 -7.2 nicotinate-nucleotide pyrophosphorylase compare
PS417_26890 -2.6 -4.2 dihydroxy-acid dehydratase compare
PS417_26995 -2.4 -9.6 phosphoserine phosphatase compare
PS417_06375 -2.3 -1.8 deoxycytidine triphosphate deaminase compare
PS417_08230 -2.3 -3.1 lipopolysaccharide biosynthesis protein RfbH compare
PS417_23770 -2.2 -3.2 exodeoxyribonuclease V subunit alpha compare
PS417_20160 -2.2 -4.7 cysteine synthase compare
PS417_22385 -2.1 -8.7 quinolinate synthase A compare
PS417_23775 -2.1 -2.7 exodeoxyribonuclease V subunit beta compare
PS417_20985 -2.0 -3.5 porin compare
PS417_08220 -2.0 -1.5 epimerase compare
PS417_20610 -2.0 -1.9 hypothetical protein compare
PS417_24835 -1.9 -7.3 hypothetical protein compare
PS417_18390 -1.9 -5.7 LacI family transcriptional regulator compare
PS417_26985 -1.8 -5.2 phosphoenolpyruvate-protein phosphotransferase compare
PS417_01560 -1.8 -2.2 imidazoleglycerol-phosphate dehydratase compare
PS417_27875 -1.8 -7.9 histidine kinase compare
PS417_10675 -1.7 -1.8 TetR family transcriptional regulator compare
PS417_01570 -1.7 -0.9 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase compare
PS417_02805 -1.6 -3.0 urease subunit gamma compare
PS417_22445 -1.5 -4.1 ATP-dependent DNA helicase RuvB compare
PS417_08200 -1.5 -3.8 hypothetical protein compare
PS417_08195 -1.5 -7.9 hypothetical protein compare
PS417_26040 -1.4 -3.5 malate synthase compare
PS417_08225 -1.4 -4.9 acetolactate synthase compare
PS417_21125 -1.4 -5.3 phosphoadenosine phosphosulfate reductase compare
PS417_06200 -1.4 -4.0 protein-PII uridylyltransferase compare
PS417_23475 -1.3 -2.1 hypothetical protein compare
PS417_10995 -1.3 -2.2 GntR family transcriptional regulator compare
PS417_21750 -1.3 -10.0 acetyl-CoA synthetase compare
PS417_04180 -1.3 -2.8 GntR family transcriptional regulator compare
PS417_17485 -1.3 -6.3 membrane protein compare
PS417_17505 -1.3 -3.1 LuxR family transcriptional regulator compare
PS417_00755 -1.3 -1.0 biofilm PGA synthesis protein PgaD compare
PS417_20665 -1.3 -6.2 hypothetical protein compare
PS417_25940 -1.3 -6.4 pyrroloquinoline quinone biosynthesis protein PqqE compare
PS417_17495 -1.2 -6.0 multidrug ABC transporter permease compare
PS417_26990 -1.2 -1.7 RNA pyrophosphohydrolase compare
PS417_06205 -1.2 -7.5 methionine aminopeptidase compare
PS417_27010 -1.2 -8.1 threonine dehydratase compare
PS417_17480 -1.2 -5.9 branched-chain amino acid ABC transporter substrate-binding protein compare
PS417_13510 -1.2 -1.6 polyketide cyclase compare
PS417_04270 -1.2 -7.7 ribonuclease G compare
PS417_09725 -1.2 -6.5 transporter compare
PS417_04595 -1.1 -3.2 cell division protein MraZ compare
PS417_19630 -1.1 -2.4 LuxR family transcriptional regulator compare
PS417_17420 -1.1 -6.9 ethanol oxidation regulatory protein ercA (from data) compare
PS417_01710 -1.1 -5.3 histidine utilization repressor compare
PS417_17565 -1.1 -4.1 branched-chain amino acid aminotransferase compare
PS417_10245 -1.1 -2.0 hypothetical protein compare
PS417_08205 -1.1 -3.5 acetyltransferase compare
PS417_19335 -1.1 -2.0 isochorismatase compare
PS417_08245 -1.0 -1.2 CDP-6-deoxy-L-threo-D-glycero-4-hexulose-3- dehydrase reductase compare
PS417_21510 -1.0 -1.8 histidine kinase compare
PS417_17415 -1.0 -3.9 histidine kinase compare
PS417_21705 -1.0 -3.7 arginine N-succinyltransferase compare
PS417_07170 -1.0 -3.8 hypothetical protein compare
PS417_11770 -1.0 -1.4 pyruvate dehydrogenase compare
PS417_17435 -1.0 -5.6 dehydrogenase compare
PS417_14940 -1.0 -2.1 LysR family transcriptional regulator compare
PS417_08580 -0.9 -4.8 histidine kinase compare
PS417_23375 -0.9 -2.2 cytochrome C oxidase compare
PS417_08990 -0.9 -2.5 ABC transporter substrate-binding protein compare
PS417_17610 -0.9 -1.8 AsnC family transcriptional regulator compare
PS417_25920 -0.9 -4.2 pyrroloquinoline quinone biosynthesis protein PqqF compare
PS417_17490 -0.9 -1.9 ABC transporter ATP-binding protein compare
PS417_27870 -0.9 -3.2 ATP-dependent DNA helicase RecG compare
PS417_21090 -0.9 -1.7 hypothetical protein compare
PS417_04410 -0.9 -1.1 hypothetical protein compare
PS417_22945 -0.9 -2.1 phosphoribosylglycinamide formyltransferase compare
PS417_17305 -0.9 -1.5 hypothetical protein compare
PS417_22450 -0.9 -1.2 ATP-dependent DNA helicase RuvA compare
PS417_15135 -0.9 -1.5 hypothetical protein compare
PS417_16510 -0.9 -2.1 Clp protease ClpX compare
PS417_21210 -0.9 -1.8 amidotransferase compare
PS417_25930 -0.8 -3.7 pyrroloquinoline quinone biosynthesis protein PqqC compare
PS417_28080 -0.8 -6.2 phosphate ABC transporter permease compare
PS417_28510 -0.8 -3.4 chromosome partitioning protein compare
PS417_03245 -0.8 -4.6 omega amino acid--pyruvate aminotransferase conserved
PS417_04985 -0.8 -2.3 ketosteroid isomerase compare
PS417_28070 -0.8 -3.5 phosphate ABC transporter ATP-binding protein compare
PS417_08135 -0.8 -3.8 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_08380 -0.8 -4.0 ABC transporter ATP-binding protein compare
PS417_03240 -0.8 -3.4 LysR family transcriptional regulator compare
PS417_15935 -0.8 -2.0 Rrf2 family transcriptional regulator compare
PS417_11845 -0.8 -3.2 RpiR family transcriptional regulator compare
PS417_27705 -0.8 -1.4 amino acid dehydrogenase compare
PS417_27135 -0.8 -0.9 glutamine synthetase compare
PS417_17450 -0.8 -3.2 amino acid ABC transporter substrate-binding protein compare
PS417_09210 -0.8 -1.9 TetR family transcriptional regulator compare
PS417_22520 -0.8 -1.8 histidine kinase compare
PS417_27585 -0.8 -1.6 diaminopimelate epimerase compare
PS417_05695 -0.8 -3.2 transcriptional regulator compare
PS417_08155 -0.8 -2.0 integration host factor subunit beta compare
PS417_05905 -0.7 -0.9 hypothetical protein compare
PS417_12310 -0.7 -5.1 methionine synthase compare
PS417_22570 -0.7 -0.9 H-NS histone compare
PS417_00375 -0.7 -2.5 membrane protein compare
PS417_07115 -0.7 -5.0 L-aspartate oxidase compare
PS417_08090 -0.7 -1.0 3-oxoacyl-ACP reductase compare
PS417_09245 -0.7 -1.7 recombinase RdgC compare
PS417_28030 -0.7 -2.2 hypothetical protein compare
PS417_14070 -0.7 -1.0 hypothetical protein compare
PS417_23900 -0.7 -4.5 poly(A) polymerase compare
PS417_06680 -0.7 -4.6 nuclease PIN compare
PS417_17500 -0.7 -3.4 sulfurtransferase compare
PS417_07245 -0.7 -2.1 2-deoxy-D-ribonate 3-dehydrogenase (from data) compare
PS417_12075 -0.7 -3.6 DNA-binding protein compare
PS417_13755 -0.7 -1.7 oxidoreductase compare
PS417_16570 -0.7 -4.1 isocitrate lyase compare
PS417_01885 -0.7 -2.3 poly(3-hydroxyalkanoate) granule-associated protein PhaF compare
PS417_17455 -0.7 -2.4 cytochrome C compare
PS417_08410 -0.7 -1.4 hypothetical protein compare
PS417_27035 -0.7 -2.2 FAD-linked oxidase compare
PS417_08320 -0.7 -1.5 metal-chelation protein CHAD compare
PS417_27610 -0.7 -2.6 hypothetical protein compare
PS417_25120 -0.7 -2.2 capsular biosynthesis protein compare
PS417_14305 -0.7 -1.7 hydroxyproline-2-epimerase compare
PS417_01750 -0.7 -2.3 histidine ammonia-lyase compare
PS417_17425 -0.6 -2.8 hypothetical protein compare
PS417_10100 -0.6 -2.6 hypothetical protein compare
PS417_15665 -0.6 -1.4 hypothetical protein compare
PS417_01630 -0.6 -1.0 hypothetical protein compare
PS417_27435 -0.6 -3.3 polyphosphate kinase compare
PS417_19430 -0.6 -2.2 ureidoglycolate hydrolase compare
PS417_22935 -0.6 -1.3 hypothetical protein compare
PS417_06895 -0.6 -2.7 DNA-binding protein compare
PS417_02950 -0.6 -2.3 tRNA-dihydrouridine synthase B compare
PS417_09010 -0.6 -1.8 phosphohistidine phosphatase compare
PS417_11825 -0.6 -1.8 transcriptional regulator compare
PS417_17980 -0.6 -1.4 ABC transporter permease compare
PS417_22870 -0.6 -1.9 lipoprotein compare
PS417_22620 -0.6 -2.4 pyruvate kinase compare
PS417_04080 -0.6 -1.9 peptide ABC transporter substrate-binding protein compare
PS417_15085 -0.6 -2.3 ATPase AAA compare
PS417_04315 -0.6 -2.1 superoxide dismutase compare
PS417_21070 -0.6 -1.7 aconitate hydratase compare
PS417_00195 -0.6 -1.6 hypothetical protein compare
PS417_02150 -0.6 -4.4 potassium/proton antiporter compare
PS417_23250 -0.6 -3.1 S-adenosylmethionine tRNA ribosyltransferase compare
PS417_22810 -0.6 -1.9 DNA base-flipping protein YbaZ compare
PS417_27005 -0.6 -0.8 membrane protein compare
PS417_08045 -0.6 -1.0 uracil permease compare
PS417_22990 -0.6 -1.1 iron dicitrate transport regulator FecR compare
PS417_27305 -0.6 -3.1 5-formyltetrahydrofolate cyclo-ligase compare
PS417_24805 -0.6 -4.0 Fis family transcriptional regulator compare
PS417_20025 -0.6 -1.3 alpha-ribazole phosphatase compare
PS417_20620 -0.6 -2.1 glycosyl transferase family 2 compare
PS417_20140 -0.6 -2.2 nucleoprotein/polynucleotide-associated enzyme compare
PS417_19650 -0.6 -2.4 chemotaxis protein CheW compare
PS417_02060 -0.6 -1.4 FAD-dependent oxidoreductase compare
PS417_10405 -0.6 -0.9 filamentous hemagglutinin compare


Specific Phenotypes

None in this experiment

For Pseudomonas simiae WCS417 in carbon source experiments

For carbon source Uridine across organisms