Experiment set3IT025 for Pseudomonas simiae WCS417

Compare to:

D-Glucosamine Hydrochloride carbon source

200 most important genes:

  gene name fitness t score description  
PS417_18600 -6.9 -4.8 isopropylmalate isomerase compare
PS417_01855 -6.4 -4.3 phosphoribosyl-AMP cyclohydrolase compare
PS417_28220 -6.2 -4.3 LysR family transcriptional regulator compare
PS417_26740 -5.8 -9.7 homoserine acetyltransferase compare
PS417_02510 -5.6 -8.6 ATP phosphoribosyltransferase regulatory subunit compare
PS417_18595 -5.5 -4.7 3-isopropylmalate dehydratase compare
PS417_23805 -5.4 -5.2 acetolactate synthase 3 regulatory subunit compare
PS417_18530 -5.4 -7.2 O-succinylhomoserine sulfhydrylase compare
PS417_18585 -4.7 -6.4 3-isopropylmalate dehydrogenase compare
PS417_23800 -4.7 -9.0 ketol-acid reductoisomerase compare
PS417_04415 -4.6 -7.7 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PS417_26745 -4.6 -7.0 methionine biosynthesis protein MetW compare
PS417_23810 -4.4 -13.1 acetolactate synthase 3 catalytic subunit compare
PS417_01575 -4.4 -7.8 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PS417_27040 -4.4 -4.1 3-phosphoglycerate dehydrogenase compare
PS417_16465 -4.3 -11.1 sirohydrochlorin ferrochelatase compare
PS417_23545 -4.3 -4.2 gamma-glutamyl kinase compare
PS417_24745 -4.2 -5.0 gamma-glutamyl phosphate reductase compare
PS417_06375 -4.2 -1.8 deoxycytidine triphosphate deaminase compare
PS417_04420 -4.2 -10.0 histidinol dehydrogenase compare
PS417_23995 -4.1 -1.7 preprotein translocase subunit SecG compare
PS417_25725 -4.0 -17.8 anthranilate synthase component I compare
PS417_00185 -3.9 -3.8 tryptophan synthase subunit beta compare
PS417_01565 -3.9 -2.9 imidazole glycerol phosphate synthase compare
PS417_12290 -3.9 -8.7 sulfite reductase compare
PS417_25720 -3.8 -6.2 anthranilate synthase component II compare
PS417_20985 -3.8 -4.4 porin compare
PS417_18560 -3.6 -7.7 N-(5'-phosphoribosyl)anthranilate isomerase compare
PS417_25715 -3.6 -6.5 anthranilate phosphoribosyltransferase compare
PS417_01605 -3.5 -2.4 phosphoglycerate mutase compare
PS417_27195 -3.4 -2.0 N-acetylglutamate synthase compare
PS417_25710 -3.4 -2.0 indole-3-glycerol-phosphate synthase compare
PS417_05595 -3.3 -7.5 ornithine carbamoyltransferase compare
PS417_12125 -3.2 -8.0 D-glucosaminate dehydratase (EC 4.3.1.9) (from data) conserved
PS417_27795 -2.9 -1.8 orotate phosphoribosyltransferase compare
PS417_26730 -2.9 -1.7 pyrroline-5-carboxylate reductase compare
PS417_12855 -2.8 -5.3 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_02005 -2.8 -11.9 glutamate synthase compare
PS417_26890 -2.8 -4.4 dihydroxy-acid dehydratase compare
PS417_24155 -2.7 -3.2 ATP-binding protein compare
PS417_23110 -2.7 -5.5 2-isopropylmalate synthase compare
PS417_00180 -2.6 -3.2 tryptophan synthase subunit alpha compare
PS417_02000 -2.4 -11.2 glutamate synthase compare
PS417_01570 -2.3 -3.0 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase compare
PS417_20160 -2.2 -4.3 cysteine synthase compare
PS417_27300 -2.2 -1.3 cell division protein ZapA compare
PS417_02415 -2.1 -3.1 phosphoserine phosphatase compare
PS417_01560 -2.1 -2.4 imidazoleglycerol-phosphate dehydratase compare
PS417_01580 -2.1 -1.2 imidazole glycerol phosphate synthase compare
PS417_20635 -2.1 -1.5 ABC transporter ATP-binding protein compare
PS417_23770 -2.1 -2.8 exodeoxyribonuclease V subunit alpha compare
PS417_22450 -2.0 -2.3 ATP-dependent DNA helicase RuvA compare
PS417_01850 -1.9 -6.7 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PS417_09235 -1.9 -1.6 molecular chaperone compare
PS417_15380 -1.9 -5.8 hypothetical protein compare
PS417_24835 -1.8 -5.9 hypothetical protein compare
PS417_12105 -1.8 -5.3 ABC transporter permease conserved
PS417_24710 -1.8 -5.7 lipoprotein compare
PS417_21150 -1.8 -5.6 HAD family hydrolase conserved
PS417_27800 -1.7 -7.0 exodeoxyribonuclease III compare
PS417_12095 -1.7 -7.4 ABC transporter substrate-binding protein conserved
PS417_10405 -1.6 -1.8 filamentous hemagglutinin compare
PS417_23095 -1.6 -1.5 exodeoxyribonuclease compare
PS417_12100 -1.6 -7.8 amino acid ABC transporter permease conserved
PS417_26995 -1.6 -8.3 phosphoserine phosphatase compare
PS417_20125 -1.6 -4.3 phosphoribosylglycinamide formyltransferase compare
PS417_20610 -1.6 -1.3 hypothetical protein compare
PS417_21510 -1.5 -2.1 histidine kinase compare
PS417_21125 -1.5 -6.2 phosphoadenosine phosphosulfate reductase compare
PS417_22990 -1.4 -1.2 iron dicitrate transport regulator FecR compare
PS417_22445 -1.3 -3.2 ATP-dependent DNA helicase RuvB compare
PS417_26990 -1.3 -1.3 RNA pyrophosphohydrolase compare
PS417_23950 -1.3 -2.4 polynucleotide phosphorylase/polyadenylase compare
PS417_08205 -1.3 -2.4 acetyltransferase compare
PS417_06200 -1.3 -4.3 protein-PII uridylyltransferase compare
PS417_22570 -1.3 -1.3 H-NS histone compare
PS417_26040 -1.2 -2.4 malate synthase compare
PS417_12120 -1.2 -1.7 IclR family transcriptional regulator compare
PS417_05065 -1.2 -2.6 hypothetical protein compare
PS417_04650 -1.2 -1.8 D-alanine--D-alanine ligase compare
PS417_16515 -1.2 -2.8 Clp protease ClpS compare
PS417_00220 -1.2 -1.5 hypothetical protein compare
PS417_12110 -1.2 -1.8 ATP-binding protein compare
PS417_08580 -1.1 -4.8 histidine kinase compare
PS417_04270 -1.1 -5.6 ribonuclease G compare
PS417_08125 -1.1 -1.3 prephenate dehydratase compare
PS417_24575 -1.1 -1.4 hypothetical protein compare
PS417_17565 -1.1 -2.4 branched-chain amino acid aminotransferase compare
PS417_22385 -1.1 -6.6 quinolinate synthase A compare
PS417_10995 -1.1 -2.2 GntR family transcriptional regulator compare
PS417_22210 -1.1 -1.9 AraC family transcriptional regulator compare
PS417_12400 -1.0 -2.8 oxidoreductase compare
PS417_05165 -1.0 -2.3 cytosol aminopeptidase compare
PS417_15780 -1.0 -2.0 membrane protein compare
PS417_24935 -1.0 -1.1 hypothetical protein compare
PS417_09085 -1.0 -1.3 hypothetical protein compare
PS417_17945 -1.0 -1.2 hypothetical protein compare
PS417_00485 -1.0 -2.2 ABC transporter permease compare
PS417_16490 -1.0 -2.1 cell division protein FtsK compare
PS417_21480 -1.0 -1.4 23S rRNA pseudouridylate synthase compare
PS417_17305 -1.0 -1.6 hypothetical protein compare
PS417_01735 -1.0 -2.6 ABC transporter permease compare
PS417_11485 -1.0 -1.3 AraC family transcriptional regulator compare
PS417_24370 -1.0 -0.8 (2Fe-2S)-binding protein compare
PS417_04380 -1.0 -1.6 ABC transporter permease compare
PS417_08540 -1.0 -2.6 RNA helicase compare
PS417_08220 -1.0 -0.9 epimerase compare
PS417_18025 -1.0 -2.9 cytochrome C compare
PS417_11845 -1.0 -3.8 RpiR family transcriptional regulator compare
PS417_05100 -0.9 -0.9 RNA polymerase sigma factor compare
PS417_27010 -0.9 -5.6 threonine dehydratase compare
PS417_21705 -0.9 -3.3 arginine N-succinyltransferase compare
PS417_06680 -0.9 -6.3 nuclease PIN compare
PS417_16510 -0.9 -1.6 Clp protease ClpX compare
PS417_08200 -0.9 -2.8 hypothetical protein compare
PS417_26800 -0.9 -5.1 cell division protein FtsX compare
PS417_24675 -0.9 -1.3 lipoyl synthase compare
PS417_15135 -0.9 -1.1 hypothetical protein compare
PS417_08990 -0.9 -2.6 ABC transporter substrate-binding protein compare
PS417_11180 -0.9 -2.2 TetR family transcriptional regulator compare
PS417_23775 -0.9 -1.6 exodeoxyribonuclease V subunit beta compare
PS417_00550 -0.9 -1.0 hypothetical protein compare
PS417_18730 -0.9 -2.5 ABC transporter permease compare
PS417_08195 -0.9 -4.0 hypothetical protein compare
PS417_03925 -0.9 -4.0 nicotinate-nucleotide pyrophosphorylase compare
PS417_26850 -0.9 -0.8 twin-arginine translocation pathway signal protein compare
PS417_20620 -0.9 -3.1 glycosyl transferase family 2 compare
PS417_22840 -0.8 -1.5 tRNA-Met compare
PS417_05570 -0.8 -4.3 DeoR faimly transcriptional regulator compare
PS417_13510 -0.8 -1.1 polyketide cyclase compare
PS417_18780 -0.8 -1.2 flavin reductase compare
PS417_19945 -0.8 -3.6 MarR family transcriptional regulator compare
PS417_16520 -0.8 -1.2 cold-shock protein compare
PS417_11480 -0.8 -2.8 hypothetical protein compare
PS417_22520 -0.8 -1.6 histidine kinase compare
PS417_23575 -0.8 -1.9 hypothetical protein compare
PS417_09210 -0.8 -1.7 TetR family transcriptional regulator compare
PS417_22260 -0.8 -1.6 segregation and condensation protein B compare
PS417_14710 -0.8 -1.3 isochorismatase compare
PS417_08155 -0.8 -1.2 integration host factor subunit beta compare
PS417_22580 -0.8 -2.1 membrane protein compare
PS417_17480 -0.8 -2.9 branched-chain amino acid ABC transporter substrate-binding protein compare
PS417_02360 -0.8 -1.7 nitrate reductase compare
PS417_02485 -0.8 -2.6 tRNA delta(2)-isopentenylpyrophosphate transferase compare
PS417_12840 -0.8 -2.6 TetR family transcriptional regulator compare
PS417_15305 -0.8 -2.2 type VI secretion protein compare
PS417_03730 -0.8 -2.0 phosphate acetyltransferase compare
PS417_15065 -0.7 -2.3 GntR family transcriptional regulator compare
PS417_20025 -0.7 -1.1 alpha-ribazole phosphatase compare
PS417_20915 -0.7 -1.1 hypothetical protein compare
PS417_28070 -0.7 -3.3 phosphate ABC transporter ATP-binding protein compare
PS417_15610 -0.7 -3.1 GDP-mannose pyrophosphatase compare
PS417_05500 -0.7 -2.4 2,3-diketo-5-methylthio-1-phosphopentane phosphatase compare
PS417_00085 -0.7 -1.6 16S rRNA methyltransferase compare
PS417_26695 -0.7 -0.9 uracil phosphoribosyltransferase compare
PS417_16255 -0.7 -1.7 RNA polymerase sigma factor compare
PS417_05650 -0.7 -1.6 leucyl-tRNA synthetase compare
PS417_13800 -0.7 -1.5 4-deoxy-4-formamido-L-arabinose-phospho-UDP deformylase compare
PS417_22565 -0.7 -1.0 formyltetrahydrofolate deformylase compare
PS417_24100 -0.7 -3.5 transcriptional regulator PdhR compare
PS417_27045 -0.7 -2.1 ATPase compare
PS417_08150 -0.7 -1.5 hypothetical protein compare
PS417_19190 -0.7 -2.0 BolA family transcriptional regulator compare
PS417_26510 -0.7 -4.8 5,10-methylenetetrahydrofolate reductase compare
PS417_11020 -0.7 -3.7 L-arabinolactonase (EC 3.1.1.15) (from data) compare
PS417_21320 -0.7 -1.9 transcriptional regulator compare
PS417_27435 -0.7 -3.0 polyphosphate kinase compare
PS417_06145 -0.7 -0.8 hypothetical protein compare
PS417_21750 -0.7 -5.6 acetyl-CoA synthetase compare
PS417_15400 -0.7 -1.3 hypothetical protein compare
PS417_23580 -0.7 -1.1 peptidylprolyl isomerase compare
PS417_02165 -0.7 -1.7 ZapA compare
PS417_09935 -0.7 -3.4 hypothetical protein compare
PS417_04410 -0.7 -1.0 hypothetical protein compare
PS417_13755 -0.7 -1.9 oxidoreductase compare
PS417_16195 -0.7 -0.8 AraC family transcriptional regulator compare
PS417_17240 -0.7 -2.4 trigger factor compare
PS417_14835 -0.7 -1.4 amidase compare
PS417_14070 -0.7 -0.9 hypothetical protein compare
PS417_11040 -0.7 -2.9 aldose epimerase compare
PS417_21830 -0.7 -2.2 TetR family transcriptional regulator compare
PS417_23625 -0.7 -1.7 LysR family transcriptional regulator compare
PS417_14940 -0.7 -1.4 LysR family transcriptional regulator compare
PS417_27035 -0.7 -2.8 FAD-linked oxidase compare
PS417_02555 -0.7 -5.2 exoribonuclease R compare
PS417_24230 -0.6 -3.3 ATP-dependent protease compare
PS417_28080 -0.6 -4.3 phosphate ABC transporter permease compare
PS417_02365 -0.6 -1.4 hypothetical protein compare
PS417_11870 -0.6 -2.3 3D-(3,5/4)-trihydroxycyclohexane-1,2-dione hydrolase IolD (EC 3.7.1.22) (from data) compare
PS417_27155 -0.6 -1.2 aliphatic sulfonates transport ATP-binding subunit compare
PS417_15525 -0.6 -3.3 AraC family transcriptional regulator compare
PS417_08770 -0.6 -1.6 hypothetical protein compare
PS417_18755 -0.6 -1.3 CrtK compare
PS417_20140 -0.6 -1.2 nucleoprotein/polynucleotide-associated enzyme compare
PS417_19755 -0.6 -1.0 flagellar motor switch protein FliM compare
PS417_06710 -0.6 -1.2 beta-ketoadipyl CoA thiolase compare
PS417_03455 -0.6 -1.0 type III secretion protein compare
PS417_17455 -0.6 -2.2 cytochrome C compare
PS417_06895 -0.6 -2.2 DNA-binding protein compare
PS417_04590 -0.6 -2.8 methyltransferase compare


Specific Phenotypes

For 12 genes in this experiment

For carbon source D-Glucosamine Hydrochloride in Pseudomonas simiae WCS417

For carbon source D-Glucosamine Hydrochloride across organisms