Experiment set3IT025 for Escherichia coli BW25113
protonated control
Group: protonated/deuteratedMedia: M9
Culturing: Keio_ML9, 48 well microplate; Tecan Infinite F200, Aerobic, at 37 (C), shaken=orbital
By: Garth on dec_2014
Media components: 4 g/L D-Glucose, 2 mM Magnesium sulfate, 0.1 mM Calcium chloride, 12.8 g/L Sodium phosphate dibasic heptahydrate, 3 g/L Potassium phosphate monobasic, 0.5 g/L Sodium Chloride, 1 g/L Ammonium chloride
Specific Phenotypes
For 2 genes in this experiment
SEED Subsystems
| Subsystem | #Specific |
|---|---|
| ABC transporter branched-chain amino acid (TC 3.A.1.4.1) | 1 |
| De Novo Pyrimidine Synthesis | 1 |
Metabolic Maps
Color code by fitness: see overview map or list of maps.
Maps containing gene(s) with specific phenotypes:
MetaCyc Pathways
Pathways that contain genes with specific phenotypes:
| Pathway | #Steps | #Present | #Specific |
|---|---|---|---|
| UMP biosynthesis II | 6 | 6 | 1 |
| UMP biosynthesis I | 6 | 6 | 1 |
| UMP biosynthesis III | 6 | 5 | 1 |
| superpathway of pyrimidine ribonucleotides de novo biosynthesis | 9 | 9 | 1 |
| superpathway of pyrimidine deoxyribonucleotides de novo biosynthesis | 18 | 18 | 1 |
| superpathway of histidine, purine, and pyrimidine biosynthesis | 46 | 46 | 1 |