Experiment set3IT025 for Agrobacterium fabrum C58

Compare to:

5-Aminovaleric acid nitrogen source

200 most important genes:

  gene name fitness t score description  
Atu1030 -5.6 -3.8 GTP pyrophosphohydrolase/synthetase, RelA/SpoT family compare
Atu0043 -5.6 -3.8 imidazoleglycerol-phosphate dehydratase compare
Atu3706 -5.0 -11.3 D-3-phosphoglycerate dehydrogenase compare
Atu0039 -4.8 -3.3 imidazoleglycerol-phosphate synthase cyclase compare
Atu0679 -4.6 -7.5 ATP phosphoribosyltransferase compare
Atu3707 -4.6 -6.2 phosphoserine aminotransferase compare
Atu0537 -4.6 -10.9 histidinol dehydrogenase compare
Atu0099 -4.0 -14.4 prephenate dehydratase compare
Atu2289 -3.9 -23.1 anthranilate synthase component I and II compare
Atu1750 -3.8 -9.5 phosphoribosyl c-AMP cyclohydrolase compare
Atu0678 -3.7 -9.9 histidyl-tRNA synthetase compare
Atu0035 -3.7 -11.4 phosphoenolpyruvate carboxykinase compare
Atu3740 -3.6 -15.4 fructose bisphosphate aldolase compare
Atu3469 -3.6 -4.8 phosphoglyceromutase compare
Atu3739 -3.5 -4.7 phosphoglycerate kinase compare
Atu2040 -3.2 -6.9 phosphoserine phosphatase compare
Atu1359 -3.2 -2.2 dnaK deletion suppressor protein compare
Atu1688 -3.1 -8.2 indole-3-glycerol-phosphate synthase compare
Atu1687 -3.0 -11.1 anthranilate phosphoribosyltransferase compare
Atu0041 -3.0 -3.6 glutamine amidotransferase compare
Atu1446 -3.0 -5.2 two component response regulator compare
Atu1588 -3.0 -10.1 homoserine dehydrogenase compare
Atu0017 -2.9 -4.5 N-(5-phosphoribosyl) anthranilate isomerase compare
Atu4166 -2.9 -4.9 UDP-glucose 4-epimerase compare
Atu1140 -2.8 -5.6 phosphoribosyalaminoimidazole-succinocarboxamide synthase compare
Atu0399 -2.8 -9.7 dihydroorotase compare
Atu2790 -2.8 -4.1 3-isopropylmalate dehydratase, small subunit compare
Atu2650 -2.8 -15.1 glycerol-3-phosphate dehydrogenase compare
Atu0400 -2.7 -6.3 orotate phosphoribosyltransferase compare
Atu1308 -2.7 -8.5 aspartate carbamoyl transferase catalytic subunit compare
Atu0298 -2.7 -8.9 orotidine 5 compare
Atu1307 -2.6 -7.2 dihydroorotase compare
Atu3293 -2.5 -9.1 D-amino acid dehydrogenase small subunit compare
Atu1620 -2.5 -13.1 triosephosphate isomerase compare
Atu2264 -2.4 -14.6 2-isopropylmalate synthase compare
Atu2709 -2.4 -17.7 3-isopropylmalate dehydratase, large subunit compare
Atu0038 -2.4 -5.2 phosphoribosyl-ATP pyrophosphohydrolase compare
Atu4505 -2.4 -11.4 LacI family transcriptional regulator compare
Atu0486 -2.3 -5.3 dihydroorotate dehydrogenase compare
Atu3754 -2.3 -6.5 phosphoribosylaminoimidazole carboxylase catalytic subunit compare
Atu2036 -2.3 -13.6 acetolactate synthase III, large subunit compare
Atu0040 -2.3 -1.9 phosphoribosylformino-5-aminoimidazole carboxamide ribotide isomerase compare
Atu1205 -2.3 -15.8 threonine dehydratase compare
Atu1075 -2.3 -10.6 amidophosphoribosyltransferase compare
Atu0030 -2.2 -2.6 phosphocarrier protein HPr compare
Atu0647 -2.2 -7.6 phosphoribosylamine--glycine ligase compare
Atu1141 -2.2 -7.8 Phosphoribosylglycinamide synthetase compare
Atu2791 -2.2 -9.1 3-isopropylmalate dehydrogenase compare
Atu2207 -2.2 -2.7 two component sensor kinase compare
Atu4616 -2.1 -2.7 dTDP-4-dehydrorhamnose reductase compare
Atu1850 -2.1 -5.8 phosphoribosylformylglycinamidine synthetase II compare
Atu2747 -2.1 -13.2 hypothetical protein compare
Atu5115 -2.0 -1.5 hypothetical protein compare
Atu1844 -1.9 -4.7 Phosphoribosylformylglycinamidine synthetase compare
Atu4617 -1.9 -12.7 dTDP-D-glucose-4,6-dehydratase compare
Atu2718 -1.9 -8.7 homoserine O-succinyltransferase compare
Atu0332 -1.8 -11.6 RNA polymerase sigma-54 factor compare
Atu4613 -1.8 -12.0 glycosyltransferase compare
Atu4711 -1.8 -7.5 two component sensor kinase compare
Atu1445 -1.8 -6.3 two component sensor kinase compare
Atu2183 -1.8 -8.9 lipopolysaccharide core biosynthesis mannosyltransferase compare
Atu4615 -1.7 -11.6 glucose-1-phosphate thymidylyltransferase compare
Atu4618 -1.7 -10.0 dTDP-rhamnose-3,5-epimerase compare
Atu3353 -1.7 -9.8 mannose-1-phosphate guanylyltransferase compare
Atu4614 -1.7 -9.1 glycosyltransferase compare
Atu5125 -1.7 -3.2 GntR family transcriptional regulator compare
Atu0432 -1.7 -8.5 O-succinylhomoserine sulfhydrylase compare
Atu3885 -1.6 -6.1 inositol monophosphatase compare
Atu3755 -1.6 -6.6 phosphoribosylaminoimidazole carboxylase ATPase subunit compare
Atu3300 -1.5 -8.7 aminotransferase compare
Atu0361 -1.4 -2.6 transcriptional regulator compare
Atu0346 -1.4 -4.9 uridylyltransferase/uridylyl-removing enzyme UTase compare
Atu0536 -1.4 -6.1 hypothetical protein compare
Atu2155 -1.4 -11.5 methionine synthase compare
Atu4419 -1.3 -8.6 LysR family transcriptional regulator compare
Atu4173 -1.3 -3.4 phosphoenolpyruvate-protein phosphotransferase compare
Atu1845 -1.3 -5.4 phosphoribosylformylglycinamidine synthase I compare
Atu3311 -1.3 -9.9 phosphomannose isomerase compare
Atu4418 -1.3 -4.7 glutaryl-CoA dehydrogenase compare
Atu3301 -1.2 -6.0 short-chain alcohol dehydrogenase compare
Atu2439 -1.2 -2.1 hypothetical protein compare
Atu2127 -1.2 -8.0 L-carnitine dehydratase compare
Atu2376 -1.2 -1.0 hypothetical protein compare
Atu0803 -1.2 -9.1 pyruvate,orthophosphate dikinase compare
Atu5540 -1.1 -0.7 hypothetical protein compare
Atu5088 -1.1 -2.0 hypothetical protein compare
Atu6036 -1.1 -0.7 entry-exclusion protein compare
Atu0026 -1.1 -1.4 hypothetical protein compare
Atu3482 -1.1 -6.4 pantoate--beta-alanine ligase compare
Atu1163 -1.1 -2.6 exopolysaccharide II synthesis transcriptional activator ExpG compare
Atu0322 -1.1 -4.4 enoyl CoA hydratase compare
Atu5462 -1.0 -2.7 ABC transporter nucleotide binding/ATPase compare
Atu5142 -1.0 -1.0 hypothetical protein compare
Atu0723 -1.0 -2.1 FAD dependent oxidoreductase compare
Atu2425 -1.0 -6.4 ABC transporter, nucleotide binding/ATPase protein compare
Atu2163 -1.0 -1.4 hypothetical protein compare
Atu5475 -0.9 -1.5 hypothetical protein compare
Atu3008 -0.9 -1.1 hypothetical protein compare
Atu2433 -0.9 -1.5 hypothetical protein compare
Atu1456 -0.9 -6.7 sulfite reductase (NADPH) hemoprotein beta-component compare
Atu2426 -0.9 -6.3 ABC transporter, membrane spanning protein (branched chain amino acid) compare
Atu2427 -0.9 -4.9 ABC transporter, membrane spanning protein compare
Atu3120 -0.9 -1.6 hypothetical protein compare
Atu1774 -0.9 -6.3 ABC transporter, substrate binding protein (peptide) compare
Atu2424 -0.9 -4.3 ABC transporter, nucleotide binding/ATPase protein compare
Atu1462 -0.8 -6.7 glycine cleavage system protein P2 compare
Atu4773 -0.8 -1.8 two component response regulator compare
Atu0876 -0.8 -2.1 superoxide dismutase compare
Atu1463 -0.8 -5.5 glycine cleavage system component H compare
Atu3292 -0.8 -4.7 alanine racemase compare
Atu5095 -0.8 -2.9 hypothetical protein compare
Atu0190 -0.8 -5.2 ABC transporter, nucleotide binding/ATPase protein (peptide) compare
Atu2015 -0.8 -5.5 aminotransferase compare
Atu2422 -0.8 -5.1 ABC transporter, substrate binding protein (amino acid) compare
Atu2115 -0.8 -4.7 pyrophosphate--fructose-6-phosphate 1-phosphotransferase compare
Atu5124 -0.7 -3.8 glutamate-1-semialdehyde aminotransferase compare
Atu1475 -0.7 -1.6 hypothetical protein compare
Atu4217 -0.7 -1.9 TetR family transcriptional regulator compare
Atu8087 -0.7 -1.1 putative peptidoglycan binding protein compare
Atu3075 -0.7 -3.1 TetR family transcriptional regulator compare
Atu1028 -0.7 -1.4 hypothetical protein compare
Atu2710 -0.7 -3.7 hypothetical protein compare
Atu5430 -0.7 -0.8 hypothetical protein compare
Atu1464 -0.7 -3.7 glycine cleavage system T protein, aminomethyltransferase compare
Atu3012 -0.7 -1.3 hypothetical protein compare
Atu3483 -0.7 -3.4 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
Atu3121 -0.7 -1.3 cold shock protein compare
Atu4608 -0.7 -5.3 hypothetical protein compare
Atu3908 -0.6 -5.2 GntR family transcriptional regulator compare
Atu8138 -0.6 -1.3 hypothetical protein compare
Atu3291 -0.6 -2.9 Lpr family transcriptional regulator compare
Atu8034 -0.6 -1.3 hypothetical protein compare
Atu2796 -0.6 -3.0 precorrin-4 C11-methyltransferase compare
Atu5164 -0.6 -0.5 type IV secretion protein AvhB3 compare
Atu0941 -0.6 -0.8 hypothetical protein compare
Atu2123 -0.6 -2.6 methylenetetrahydrofolate reductase compare
Atu0031 -0.6 -1.1 PTS system, IIA component compare
Atu5501 -0.6 -0.8 hypothetical protein compare
Atu5502 -0.6 -2.0 hypothetical protein compare
Atu4896 -0.6 -1.1 acetyltransferase compare
Atu1634 -0.6 -1.1 hypothetical protein compare
Atu5519 -0.6 -2.2 hypothetical protein compare
Atu0188 -0.6 -1.5 ABC transporter, membrane spanning protein (peptide) compare
Atu2789 -0.6 -1.4 hypothetical protein compare
Atu0953 -0.6 -0.4 hypothetical protein compare
Atu3783 -0.6 -4.7 glutamate synthase subunit beta compare
Atu1454 -0.6 -2.8 siroheme synthase compare
Atu5513 -0.6 -0.8 cold shock protein compare
Atu0357 -0.6 -3.9 phosphate starvation inducible protein compare
Atu3009 -0.6 -0.6 exopolysaccharide production protein compare
Atu4609 -0.6 -4.5 glycosyltransferase compare
Atu1062 -0.6 -1.3 phosphatidylserine synthase compare
Atu3572 -0.6 -3.3 transcriptional regulator compare
Atu3784 -0.6 -4.8 glutamate synthase large subunit compare
Atu8054 -0.6 -0.3 hypothetical protein compare
Atu1686 -0.6 -4.0 peptidyl-prolyl cis-trans isomerse D compare
Atu0809 -0.5 -1.1 hypothetical protein compare
Atu4702 -0.5 -2.3 GntR family transcriptional regulator compare
Atu3912 -0.5 -3.0 hypothetical protein compare
Atu1149 -0.5 -1.0 adenylate cyclase compare
Atu4306 -0.5 -2.5 two component response regulator compare
Atu2554 -0.5 -1.5 lysyl-tRNA synthetase compare
Atu0986 -0.5 -1.0 hypothetical protein compare
Atu4610 -0.5 -4.0 sugar nucleotide epimerase/dehydratase compare
Atu2234 -0.5 -1.2 hypothetical protein compare
Atu0837 -0.5 -3.1 transcriptional regulator, MarR family compare
Atu2428 -0.5 -2.7 exopolysaccharide production protein PssB compare
Atu2777 -0.5 -3.3 hypothetical protein compare
Atu1455 -0.5 -1.2 hypothetical protein compare
Atu0331 -0.5 -1.4 sigma-54 modulation protein compare
Atu2606 -0.5 -2.8 transcriptional regulator, GntR family compare
Atu2783 -0.5 -2.9 acetyltransferase compare
Atu5155 -0.5 -1.0 MarR family transcriptional regulator compare
Atu1457 -0.5 -1.7 hypothetical protein compare
Atu3001 -0.5 -1.3 hypothetical protein compare
Atu8202 -0.5 -1.7 hypothetical protein compare
Atu5145 -0.5 -0.9 acetyltransferase compare
Atu0538 -0.5 -1.4 hypothetical protein compare
Atu0189 -0.5 -1.7 ABC transporter, membrane spanning protein (peptide) compare
Atu0971 -0.5 -1.9 two component sensor kinase compare
Atu1580 -0.5 -2.8 ABC transporter, nucleotide binding/ATPase protein (amino acid) compare
Atu2017 -0.5 -0.8 hypothetical protein compare
Atu0746 -0.5 -1.2 hypothetical protein compare
Atu1573 -0.5 -0.9 hypothetical protein compare
Atu1546 -0.5 -2.6 transcriptional regulator, MerR family compare
Atu4232 -0.5 -2.2 GntR family transcriptional regulator compare
Atu0374 -0.5 -2.9 inosine-uridine preferring nucleoside hydrolase compare
Atu0565 -0.5 -2.0 hypothetical protein compare
Atu2442 -0.5 -0.9 hypothetical protein compare
Atu6040 -0.5 -1.0 conjugal transfer protein compare
Atu3619 -0.5 -1.9 hypothetical protein compare
Atu0680 -0.5 -2.3 hypothetical protein compare
Atu1336 -0.5 -1.7 hypothetical protein compare
Atu0962 -0.5 -2.5 hypothetical protein compare
Atu0807 -0.4 -2.6 metallo-beta-lactamase superfamily protein compare
Atu3597 -0.4 -3.0 3-hydroxybutyryl-CoA dehydrogenase compare
Atu2678 -0.4 -2.7 2'-5' RNA ligase compare
Atu2249 -0.4 -0.7 hypothetical protein compare
Atu3799 -0.4 -2.9 GntR family transcriptional regulator compare
Atu0846 -0.4 -1.6 transcriptional regulator, MarR family compare


Specific Phenotypes

For 6 genes in this experiment

For nitrogen source 5-Aminovaleric acid in Agrobacterium fabrum C58

For nitrogen source 5-Aminovaleric acid across organisms