Experiment set3IT024 for Pseudomonas simiae WCS417

Compare to:

N-Acetyl-D-Glucosamine carbon source

200 most important genes:

  gene name fitness t score description  
PS417_01575 -9.5 -5.3 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PS417_18600 -8.0 -5.0 isopropylmalate isomerase compare
PS417_01855 -7.4 -4.4 phosphoribosyl-AMP cyclohydrolase compare
PS417_28220 -7.3 -4.6 LysR family transcriptional regulator compare
PS417_04415 -7.2 -7.0 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PS417_18560 -7.1 -9.2 N-(5'-phosphoribosyl)anthranilate isomerase compare
PS417_25720 -6.8 -9.4 anthranilate synthase component II compare
PS417_23805 -6.7 -6.5 acetolactate synthase 3 regulatory subunit compare
PS417_25725 -6.3 -17.9 anthranilate synthase component I compare
PS417_16465 -6.3 -12.0 sirohydrochlorin ferrochelatase compare
PS417_02510 -6.2 -4.3 ATP phosphoribosyltransferase regulatory subunit compare
PS417_27040 -6.1 -3.2 3-phosphoglycerate dehydrogenase compare
PS417_01210 -6.0 -9.0 hypothetical protein compare
PS417_01565 -5.9 -3.8 imidazole glycerol phosphate synthase compare
PS417_23800 -5.9 -9.9 ketol-acid reductoisomerase compare
PS417_22995 -5.8 -9.1 PTS N-acetyl-D-glucosamine transporter conserved
PS417_18595 -5.8 -4.4 3-isopropylmalate dehydratase compare
PS417_24745 -5.8 -4.0 gamma-glutamyl phosphate reductase compare
PS417_12855 -5.8 -4.0 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_26740 -5.7 -11.7 homoserine acetyltransferase compare
PS417_18585 -5.7 -7.8 3-isopropylmalate dehydrogenase compare
PS417_20125 -5.5 -6.0 phosphoribosylglycinamide formyltransferase compare
PS417_01850 -5.4 -7.9 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PS417_18530 -5.3 -4.7 O-succinylhomoserine sulfhydrylase compare
PS417_04420 -5.3 -12.6 histidinol dehydrogenase compare
PS417_23810 -5.2 -11.1 acetolactate synthase 3 catalytic subunit compare
PS417_26890 -5.0 -7.1 dihydroxy-acid dehydratase compare
PS417_27795 -5.0 -1.8 orotate phosphoribosyltransferase compare
PS417_06375 -4.9 -1.8 deoxycytidine triphosphate deaminase compare
PS417_23545 -4.9 -3.5 gamma-glutamyl kinase compare
PS417_02005 -4.8 -14.2 glutamate synthase compare
PS417_12290 -4.7 -11.1 sulfite reductase compare
PS417_00185 -4.6 -6.3 tryptophan synthase subunit beta compare
PS417_23110 -4.6 -8.8 2-isopropylmalate synthase compare
PS417_03925 -4.6 -10.3 nicotinate-nucleotide pyrophosphorylase compare
PS417_09725 -4.5 -10.6 transporter compare
PS417_26745 -4.4 -4.6 methionine biosynthesis protein MetW compare
PS417_23000 -4.2 -9.1 PTS N-acetyl-D-glucosamine transporter conserved
PS417_27195 -4.1 -2.0 N-acetylglutamate synthase compare
PS417_08125 -4.1 -2.1 prephenate dehydratase compare
PS417_25710 -4.1 -2.1 indole-3-glycerol-phosphate synthase compare
PS417_16570 -4.0 -9.3 isocitrate lyase compare
PS417_05595 -3.8 -7.3 ornithine carbamoyltransferase compare
PS417_22385 -3.8 -14.4 quinolinate synthase A compare
PS417_21035 -3.8 -11.6 multidrug transporter compare
PS417_02000 -3.7 -13.7 glutamate synthase compare
PS417_01605 -3.6 -3.4 phosphoglycerate mutase compare
PS417_02415 -3.6 -5.8 phosphoserine phosphatase compare
PS417_26730 -3.6 -1.8 pyrroline-5-carboxylate reductase compare
PS417_00180 -3.6 -3.9 tryptophan synthase subunit alpha compare
PS417_20160 -3.5 -4.6 cysteine synthase compare
PS417_01580 -3.5 -2.4 imidazole glycerol phosphate synthase compare
PS417_22990 -3.5 -2.6 iron dicitrate transport regulator FecR compare
PS417_22980 -3.4 -3.1 GntR family transcriptional regulator conserved
PS417_23995 -3.4 -1.7 preprotein translocase subunit SecG compare
PS417_21750 -3.4 -17.8 acetyl-CoA synthetase compare
PS417_14940 -3.3 -3.5 LysR family transcriptional regulator compare
PS417_01710 -3.3 -5.9 histidine utilization repressor compare
PS417_26995 -3.2 -10.1 phosphoserine phosphatase compare
PS417_22985 -3.2 -6.5 N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25) (from data) conserved
PS417_01560 -3.1 -3.8 imidazoleglycerol-phosphate dehydratase compare
PS417_26040 -2.8 -4.4 malate synthase compare
PS417_24765 -2.8 -5.7 membrane protein compare
PS417_27435 -2.8 -8.2 polyphosphate kinase compare
PS417_25715 -2.8 -4.0 anthranilate phosphoribosyltransferase compare
PS417_22690 -2.7 -7.4 phosphogluconate dehydratase compare
PS417_24155 -2.5 -4.6 ATP-binding protein compare
PS417_22695 -2.5 -10.7 glyceraldehyde-3-phosphate dehydrogenase compare
PS417_24100 -2.4 -8.4 transcriptional regulator PdhR compare
PS417_28100 -2.3 -6.9 glucose-6-phosphate 1-epimerase [EC: 5.1.3.15] (from data) conserved
PS417_04180 -2.3 -6.1 GntR family transcriptional regulator compare
PS417_21020 -2.3 -15.1 phosphoenolpyruvate synthase conserved
PS417_23770 -2.2 -3.3 exodeoxyribonuclease V subunit alpha compare
PS417_08155 -2.2 -3.7 integration host factor subunit beta compare
PS417_20985 -2.0 -4.9 porin compare
PS417_27875 -2.0 -6.4 histidine kinase compare
PS417_07115 -2.0 -11.2 L-aspartate oxidase compare
PS417_11430 -1.9 -8.3 EamA compare
PS417_17485 -1.9 -6.1 membrane protein compare
PS417_22445 -1.8 -4.8 ATP-dependent DNA helicase RuvB compare
PS417_08230 -1.8 -2.7 lipopolysaccharide biosynthesis protein RfbH compare
PS417_17480 -1.8 -6.6 branched-chain amino acid ABC transporter substrate-binding protein compare
PS417_26985 -1.8 -5.2 phosphoenolpyruvate-protein phosphotransferase compare
PS417_16990 -1.8 -6.3 acyl-CoA dehydrogenase compare
PS417_09705 -1.7 -4.1 hypothetical protein compare
PS417_08220 -1.7 -1.3 epimerase compare
PS417_25730 -1.7 -4.0 phosphoglycolate phosphatase compare
PS417_25920 -1.7 -7.5 pyrroloquinoline quinone biosynthesis protein PqqF conserved
PS417_21705 -1.7 -4.2 arginine N-succinyltransferase compare
PS417_27535 -1.7 -8.2 chemotaxis protein CheY compare
PS417_22450 -1.7 -1.7 ATP-dependent DNA helicase RuvA compare
PS417_02225 -1.6 -3.6 bifunctional glutamine-synthetase adenylyltransferase/deadenyltransferase compare
PS417_10675 -1.6 -1.6 TetR family transcriptional regulator compare
PS417_17450 -1.6 -2.5 amino acid ABC transporter substrate-binding protein compare
PS417_24835 -1.6 -5.3 hypothetical protein compare
PS417_12840 -1.6 -4.2 TetR family transcriptional regulator compare
PS417_17495 -1.6 -6.7 multidrug ABC transporter permease compare
PS417_27035 -1.6 -3.4 FAD-linked oxidase compare
PS417_27010 -1.6 -7.5 threonine dehydratase compare
PS417_01570 -1.6 -1.1 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase compare
PS417_12310 -1.6 -8.4 methionine synthase compare
PS417_25940 -1.6 -6.8 pyrroloquinoline quinone biosynthesis protein PqqE compare
PS417_26510 -1.6 -8.3 5,10-methylenetetrahydrofolate reductase compare
PS417_04365 -1.5 -1.7 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase compare
PS417_10995 -1.5 -3.3 GntR family transcriptional regulator compare
PS417_08195 -1.5 -7.5 hypothetical protein compare
PS417_17435 -1.4 -8.8 dehydrogenase compare
PS417_27135 -1.4 -1.3 glutamine synthetase compare
PS417_23900 -1.4 -7.6 poly(A) polymerase compare
PS417_23490 -1.4 -1.9 dihydrofolate reductase compare
PS417_17455 -1.4 -4.3 cytochrome C compare
PS417_14980 -1.3 -1.4 universal stress protein UspA compare
PS417_27835 -1.3 -6.8 endoribonuclease compare
PS417_08245 -1.3 -1.3 CDP-6-deoxy-L-threo-D-glycero-4-hexulose-3- dehydrase reductase compare
PS417_08205 -1.3 -3.3 acetyltransferase compare
PS417_20665 -1.3 -6.6 hypothetical protein compare
PS417_11530 -1.3 -5.2 amidase compare
PS417_21010 -1.3 -5.7 ribonuclease activity regulator protein RraA compare
PS417_11440 -1.2 -1.1 hypothetical protein compare
PS417_21125 -1.2 -4.9 phosphoadenosine phosphosulfate reductase compare
PS417_27690 -1.2 -4.0 XRE family transcriptional regulator compare
PS417_17420 -1.2 -4.0 ethanol oxidation regulatory protein ercA (from data) compare
PS417_22520 -1.2 -2.5 histidine kinase compare
PS417_08580 -1.2 -5.1 histidine kinase compare
PS417_13305 -1.1 -1.4 hypothetical protein compare
PS417_09010 -1.1 -3.3 phosphohistidine phosphatase compare
PS417_08225 -1.1 -4.1 acetolactate synthase compare
PS417_08430 -1.1 -3.2 phospho-2-dehydro-3-deoxyheptonate aldolase compare
PS417_25930 -1.1 -4.8 pyrroloquinoline quinone biosynthesis protein PqqC compare
PS417_08135 -1.1 -4.4 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_08200 -1.1 -2.7 hypothetical protein compare
PS417_13510 -1.1 -1.4 polyketide cyclase compare
PS417_27930 -1.1 -1.5 type VI secretion protein compare
PS417_27305 -1.1 -5.5 5-formyltetrahydrofolate cyclo-ligase compare
PS417_25175 -1.0 -2.8 hypothetical protein compare
PS417_10405 -1.0 -1.4 filamentous hemagglutinin compare
PS417_17490 -1.0 -2.0 ABC transporter ATP-binding protein compare
PS417_14075 -1.0 -1.9 hypothetical protein compare
PS417_17425 -1.0 -3.8 hypothetical protein compare
PS417_04595 -1.0 -2.8 cell division protein MraZ compare
PS417_11845 -1.0 -3.7 RpiR family transcriptional regulator compare
PS417_17240 -1.0 -2.5 trigger factor compare
PS417_16490 -1.0 -2.0 cell division protein FtsK compare
PS417_09710 -1.0 -2.3 dehydrogenase compare
PS417_05905 -1.0 -1.0 hypothetical protein compare
PS417_17980 -1.0 -1.8 ABC transporter permease compare
PS417_22210 -1.0 -2.1 AraC family transcriptional regulator compare
PS417_04270 -1.0 -5.3 ribonuclease G compare
PS417_28050 -1.0 -2.6 hypothetical protein compare
PS417_22570 -1.0 -1.1 H-NS histone compare
PS417_26005 -0.9 -6.1 biotin synthase compare
PS417_21700 -0.9 -3.1 arginine N-succinyltransferase compare
PS417_01110 -0.9 -5.6 cysteine desulfhydrase compare
PS417_12355 -0.9 -1.9 magnesium chelatase compare
PS417_27910 -0.9 -2.0 PppA compare
PS417_21030 -0.9 -4.2 GntR family transcriptional regulator compare
PS417_08510 -0.9 -2.4 LysR family transcriptional regulator compare
PS417_00535 -0.9 -2.0 Holliday junction resolvase compare
PS417_07795 -0.9 -1.8 hypothetical protein compare
PS417_06635 -0.9 -1.2 ferredoxin compare
PS417_27610 -0.9 -4.6 hypothetical protein compare
PS417_05455 -0.9 -4.6 XRE family transcriptional regulator compare
PS417_05165 -0.9 -2.7 cytosol aminopeptidase compare
PS417_00550 -0.9 -1.1 hypothetical protein compare
PS417_19600 -0.9 -1.3 exonuclease compare
PS417_25650 -0.9 -3.7 anhydro-N-acetylmuramic acid kinase compare
PS417_19965 -0.9 -5.1 histidine kinase compare
PS417_28510 -0.9 -3.5 chromosome partitioning protein compare
PS417_23775 -0.9 -1.6 exodeoxyribonuclease V subunit beta compare
PS417_10245 -0.9 -1.5 hypothetical protein compare
PS417_09680 -0.9 -1.7 hydrolase compare
PS417_26990 -0.9 -1.3 RNA pyrophosphohydrolase compare
PS417_06195 -0.8 -5.7 succinyldiaminopimelate aminotransferase compare
PS417_22935 -0.8 -1.8 hypothetical protein compare
PS417_23500 -0.8 -2.1 D-erythro-7,8-dihydroneopterin triphosphate epimerase compare
PS417_18105 -0.8 -1.3 iron-dicitrate transporter substrate-binding subunit compare
PS417_09695 -0.8 -1.4 hydrolase compare
PS417_11930 -0.8 -3.6 hypothetical protein compare
PS417_23830 -0.8 -4.8 hypothetical protein compare
PS417_12805 -0.8 -5.7 glycogen branching protein compare
PS417_02555 -0.8 -6.9 exoribonuclease R compare
PS417_17505 -0.8 -2.2 LuxR family transcriptional regulator compare
PS417_01180 -0.8 -4.5 ribosomal protein S6 modification protein compare
PS417_05100 -0.8 -2.1 RNA polymerase sigma factor compare
PS417_07170 -0.8 -3.3 hypothetical protein compare
PS417_09210 -0.8 -1.3 TetR family transcriptional regulator compare
PS417_04410 -0.8 -1.0 hypothetical protein compare
PS417_27205 -0.8 -1.8 adenylate cyclase compare
PS417_05540 -0.8 -2.4 histidine kinase compare
PS417_20610 -0.8 -1.1 hypothetical protein compare
PS417_21210 -0.8 -1.8 amidotransferase compare
PS417_10425 -0.8 -1.6 hypothetical protein compare
PS417_05815 -0.8 -3.1 recombinase RecA compare
PS417_27870 -0.8 -2.0 ATP-dependent DNA helicase RecG compare
PS417_17000 -0.8 -2.4 MerR family transcriptional regulator compare
PS417_14920 -0.8 -3.0 CoA-transferase compare
PS417_00355 -0.8 -1.4 metal ABC transporter permease compare
PS417_09085 -0.8 -1.2 hypothetical protein compare
PS417_06200 -0.7 -2.6 protein-PII uridylyltransferase compare
PS417_22500 -0.7 -5.4 porin compare


Specific Phenotypes

For 16 genes in this experiment

For carbon source N-Acetyl-D-Glucosamine in Pseudomonas simiae WCS417

For carbon source N-Acetyl-D-Glucosamine across organisms