Experiment set3IT024 for Agrobacterium fabrum C58

Compare to:

5-Aminovaleric acid nitrogen source

200 most important genes:

  gene name fitness t score description  
Atu3707 -5.3 -5.1 phosphoserine aminotransferase compare
Atu0043 -5.3 -3.6 imidazoleglycerol-phosphate dehydratase compare
Atu1750 -5.2 -7.5 phosphoribosyl c-AMP cyclohydrolase compare
Atu3706 -5.1 -11.4 D-3-phosphoglycerate dehydrogenase compare
Atu0679 -4.6 -8.4 ATP phosphoribosyltransferase compare
Atu2040 -4.6 -6.9 phosphoserine phosphatase compare
Atu0039 -4.5 -3.1 imidazoleglycerol-phosphate synthase cyclase compare
Atu0035 -4.4 -12.6 phosphoenolpyruvate carboxykinase compare
Atu0017 -4.3 -5.1 N-(5-phosphoribosyl) anthranilate isomerase compare
Atu0041 -4.2 -4.1 glutamine amidotransferase compare
Atu0678 -4.2 -9.3 histidyl-tRNA synthetase compare
Atu0099 -4.0 -13.5 prephenate dehydratase compare
Atu0537 -3.9 -8.8 histidinol dehydrogenase compare
Atu1850 -3.6 -4.8 phosphoribosylformylglycinamidine synthetase II compare
Atu2289 -3.5 -16.6 anthranilate synthase component I and II compare
Atu1308 -3.4 -7.2 aspartate carbamoyl transferase catalytic subunit compare
Atu3740 -3.4 -11.1 fructose bisphosphate aldolase compare
Atu1588 -3.4 -10.4 homoserine dehydrogenase compare
Atu3469 -3.2 -4.3 phosphoglyceromutase compare
Atu1687 -3.2 -13.6 anthranilate phosphoribosyltransferase compare
Atu1307 -3.2 -8.7 dihydroorotase compare
Atu0399 -3.1 -9.6 dihydroorotase compare
Atu2790 -3.1 -4.1 3-isopropylmalate dehydratase, small subunit compare
Atu5430 -3.1 -2.1 hypothetical protein compare
Atu0400 -2.9 -5.2 orotate phosphoribosyltransferase compare
Atu1446 -2.9 -4.3 two component response regulator compare
Atu1688 -2.9 -7.6 indole-3-glycerol-phosphate synthase compare
Atu0040 -2.9 -1.7 phosphoribosylformino-5-aminoimidazole carboxamide ribotide isomerase compare
Atu2650 -2.8 -12.7 glycerol-3-phosphate dehydrogenase compare
Atu5164 -2.8 -1.2 type IV secretion protein AvhB3 compare
Atu1844 -2.8 -4.8 Phosphoribosylformylglycinamidine synthetase compare
Atu1359 -2.8 -2.0 dnaK deletion suppressor protein compare
Atu0038 -2.7 -6.2 phosphoribosyl-ATP pyrophosphohydrolase compare
Atu3739 -2.7 -2.8 phosphoglycerate kinase compare
Atu3293 -2.7 -9.2 D-amino acid dehydrogenase small subunit compare
Atu0486 -2.6 -6.0 dihydroorotate dehydrogenase compare
Atu2036 -2.6 -15.9 acetolactate synthase III, large subunit compare
Atu4505 -2.5 -10.6 LacI family transcriptional regulator compare
Atu2709 -2.5 -16.2 3-isopropylmalate dehydratase, large subunit compare
Atu2264 -2.5 -11.1 2-isopropylmalate synthase compare
Atu1141 -2.4 -6.9 Phosphoribosylglycinamide synthetase compare
Atu0298 -2.4 -9.3 orotidine 5 compare
Atu2747 -2.4 -11.4 hypothetical protein compare
Atu1075 -2.4 -6.9 amidophosphoribosyltransferase compare
Atu0647 -2.3 -8.4 phosphoribosylamine--glycine ligase compare
Atu1030 -2.3 -2.3 GTP pyrophosphohydrolase/synthetase, RelA/SpoT family compare
Atu1140 -2.3 -7.5 phosphoribosyalaminoimidazole-succinocarboxamide synthase compare
Atu2718 -2.3 -9.1 homoserine O-succinyltransferase compare
Atu3754 -2.3 -5.0 phosphoribosylaminoimidazole carboxylase catalytic subunit compare
Atu1845 -2.3 -4.1 phosphoribosylformylglycinamidine synthase I compare
Atu1620 -2.2 -9.9 triosephosphate isomerase compare
Atu2791 -2.1 -7.0 3-isopropylmalate dehydrogenase compare
Atu1205 -2.1 -11.3 threonine dehydratase compare
Atu0432 -2.1 -8.2 O-succinylhomoserine sulfhydrylase compare
Atu3730 -2.0 -1.8 hypothetical protein compare
Atu4773 -1.9 -2.3 two component response regulator compare
Atu4711 -1.9 -5.8 two component sensor kinase compare
Atu3300 -1.8 -9.0 aminotransferase compare
Atu3301 -1.8 -8.1 short-chain alcohol dehydrogenase compare
Atu0030 -1.8 -2.1 phosphocarrier protein HPr compare
Atu0332 -1.8 -10.4 RNA polymerase sigma-54 factor compare
Atu4418 -1.8 -7.3 glutaryl-CoA dehydrogenase compare
Atu4897 -1.8 -1.9 hypothetical protein compare
Atu3885 -1.8 -7.1 inositol monophosphatase compare
Atu1445 -1.6 -6.3 two component sensor kinase compare
Atu4166 -1.6 -3.3 UDP-glucose 4-epimerase compare
Atu8088 -1.6 -2.8 hypothetical protein compare
Atu4173 -1.5 -3.3 phosphoenolpyruvate-protein phosphotransferase compare
Atu1439 -1.5 -3.0 hypothetical protein compare
Atu2127 -1.5 -6.7 L-carnitine dehydratase compare
Atu3017 -1.5 -1.4 phosphoglyceromutase compare
Atu0031 -1.5 -1.8 PTS system, IIA component compare
Atu4618 -1.5 -11.1 dTDP-rhamnose-3,5-epimerase compare
Atu8138 -1.4 -1.9 hypothetical protein compare
Atu2155 -1.4 -10.8 methionine synthase compare
Atu3755 -1.3 -3.9 phosphoribosylaminoimidazole carboxylase ATPase subunit compare
Atu4419 -1.3 -6.8 LysR family transcriptional regulator compare
Atu2424 -1.3 -5.7 ABC transporter, nucleotide binding/ATPase protein compare
Atu1457 -1.3 -3.3 hypothetical protein compare
Atu0188 -1.3 -3.6 ABC transporter, membrane spanning protein (peptide) compare
Atu0346 -1.2 -3.2 uridylyltransferase/uridylyl-removing enzyme UTase compare
Atu4217 -1.2 -2.0 TetR family transcriptional regulator compare
Atu2183 -1.2 -5.6 lipopolysaccharide core biosynthesis mannosyltransferase compare
Atu3468 -1.2 -1.2 hypothetical protein compare
Atu4615 -1.2 -6.6 glucose-1-phosphate thymidylyltransferase compare
Atu4617 -1.2 -6.3 dTDP-D-glucose-4,6-dehydratase compare
Atu0803 -1.2 -8.3 pyruvate,orthophosphate dikinase compare
Atu3353 -1.2 -7.4 mannose-1-phosphate guanylyltransferase compare
Atu0322 -1.1 -4.3 enoyl CoA hydratase compare
Atu2207 -1.1 -2.1 two component sensor kinase compare
Atu3482 -1.1 -5.1 pantoate--beta-alanine ligase compare
Atu3001 -1.1 -2.2 hypothetical protein compare
Atu0361 -1.1 -2.0 transcriptional regulator compare
Atu0690 -1.1 -1.8 hypothetical protein compare
Atu0026 -1.0 -1.2 hypothetical protein compare
Atu6009 -1.0 -2.5 indole-3-lactate synthase compare
Atu2015 -1.0 -7.5 aminotransferase compare
Atu4614 -1.0 -4.6 glycosyltransferase compare
Atu6112 -1.0 -1.7 conserved hypothetical protein compare
Atu5007 -1.0 -2.4 santhopine-responsive transcriptional repressor compare
Atu2376 -1.0 -0.9 hypothetical protein compare
Atu2123 -1.0 -3.1 methylenetetrahydrofolate reductase compare
Atu1570 -1.0 -1.0 hypothetical protein compare
Atu5010 -1.0 -1.9 hypothetical protein compare
Atu4613 -0.9 -6.6 glycosyltransferase compare
Atu1774 -0.9 -4.8 ABC transporter, substrate binding protein (peptide) compare
Atu1456 -0.9 -5.8 sulfite reductase (NADPH) hemoprotein beta-component compare
Atu3413 -0.9 -3.7 AsnC family transcriptional regulator compare
Atu1904 -0.9 -2.0 transcriptional regulator compare
Atu8099 -0.9 -1.6 hypothetical protein compare
Atu4869 -0.9 -2.9 hypothetical protein compare
Atu2422 -0.9 -6.1 ABC transporter, substrate binding protein (amino acid) compare
Atu0837 -0.9 -5.3 transcriptional regulator, MarR family compare
Atu0912 -0.9 -1.5 Na+/H+ antiporter compare
Atu2427 -0.9 -6.1 ABC transporter, membrane spanning protein compare
Atu3075 -0.9 -5.8 TetR family transcriptional regulator compare
Atu1364 -0.9 -4.7 ATP-dependent Clp protease, ATP-binding subunit compare
Atu3311 -0.9 -6.9 phosphomannose isomerase compare
Atu3292 -0.9 -5.4 alanine racemase compare
Atu3008 -0.8 -0.9 hypothetical protein compare
Atu2425 -0.8 -4.5 ABC transporter, nucleotide binding/ATPase protein compare
Atu1462 -0.8 -5.8 glycine cleavage system protein P2 compare
Atu2426 -0.8 -4.0 ABC transporter, membrane spanning protein (branched chain amino acid) compare
Atu6159 -0.8 -1.2 hypothetical protein compare
Atu2163 -0.8 -1.4 hypothetical protein compare
Atu1464 -0.8 -3.3 glycine cleavage system T protein, aminomethyltransferase compare
Atu1444 -0.8 -2.5 nitrogen regulation protein compare
Atu0536 -0.8 -3.7 hypothetical protein compare
Atu0422 -0.8 -1.6 ABC transporter, membrane spanning protein compare
Atu2800 -0.8 -1.0 precorrin-3B C17-methyltransferase compare
Atu1455 -0.8 -2.8 hypothetical protein compare
Atu5088 -0.8 -1.4 hypothetical protein compare
Atu3291 -0.8 -2.5 Lpr family transcriptional regulator compare
Atu1028 -0.8 -1.8 hypothetical protein compare
Atu4391 -0.7 -1.9 nitric oxide reductase NorE protein compare
Atu6181 -0.7 -2.0 virA/G regulated topoisomerase compare
Atu5149 -0.7 -1.8 acetyltransferase compare
Atu0225 -0.7 -0.8 hypothetical protein compare
Atu1062 -0.7 -1.4 phosphatidylserine synthase compare
Atu4873 -0.7 -3.6 TetR family transcriptional regulator compare
Atu0895 -0.7 -1.9 ABC transporter, substrate binding protein compare
Atu5511 -0.7 -1.2 hypothetical protein compare
Atu5047 -0.7 -2.1 hypothetical protein compare
Atu0846 -0.7 -2.4 transcriptional regulator, MarR family compare
Atu4882 -0.7 -1.4 hypothetical protein compare
Atu2757 -0.7 -3.5 nitrogen regulatory protein PII compare
Atu5468 -0.7 -1.3 hypothetical protein compare
Atu8046 -0.7 -1.4 hypothetical protein compare
Atu4896 -0.7 -1.3 acetyltransferase compare
Atu3783 -0.7 -5.4 glutamate synthase subunit beta compare
Atu0986 -0.7 -1.0 hypothetical protein compare
Atu2555 -0.7 -1.9 L-lysine 2,3-aminomutase compare
Atu0357 -0.6 -4.5 phosphate starvation inducible protein compare
Atu2115 -0.6 -4.1 pyrophosphate--fructose-6-phosphate 1-phosphotransferase compare
Atu1686 -0.6 -5.1 peptidyl-prolyl cis-trans isomerse D compare
Atu6153 -0.6 -1.7 conserved hypothetical protein compare
Atu3572 -0.6 -3.6 transcriptional regulator compare
Atu0660 -0.6 -2.9 hydrolase compare
Atu5011 -0.6 -1.8 polyketide biosynthesis dithiol-disulfide isomerase compare
Atu3012 -0.6 -1.2 hypothetical protein compare
Atu3908 -0.6 -4.2 GntR family transcriptional regulator compare
Atu3497 -0.6 -2.3 hypothetical protein compare
Atu5095 -0.6 -2.0 hypothetical protein compare
Atu5483 -0.6 -2.8 GntR family transcriptional regulator compare
Atu2710 -0.6 -2.6 hypothetical protein compare
Atu0966 -0.6 -1.9 hypothetical protein compare
Atu5146 -0.6 -1.0 hypothetical protein compare
Atu8191 -0.6 -1.4 hypothetical protein compare
Atu4868 -0.6 -4.0 oxidoreductase compare
Atu1463 -0.6 -3.2 glycine cleavage system component H compare
Atu4702 -0.6 -3.0 GntR family transcriptional regulator compare
Atu3498 -0.6 -4.6 aldehyde dehydrogenase compare
Atu3023 -0.6 -3.1 sugar ABC transporter permease compare
Atu4609 -0.6 -4.8 glycosyltransferase compare
Atu1358 -0.6 -1.2 hypothetical protein compare
Atu3011 -0.6 -1.2 ArsR family transcriptional regulator compare
Atu4892 -0.6 -3.5 hypothetical protein compare
Atu5124 -0.6 -3.2 glutamate-1-semialdehyde aminotransferase compare
Atu3784 -0.6 -4.9 glutamate synthase large subunit compare
Atu5502 -0.6 -1.2 hypothetical protein compare
Atu2192 -0.6 -0.9 hypothetical protein compare
Atu3496 -0.6 -2.3 hypothetical protein compare
Atu0941 -0.6 -0.7 hypothetical protein compare
Atu1124 -0.5 -2.2 hypothetical protein compare
Atu4865 -0.5 -4.2 oxidoreductase compare
Atu6097 -0.5 -2.0 cell filamentation protein compare
Atu2678 -0.5 -3.3 2'-5' RNA ligase compare
Atu0889 -0.5 -2.4 hypothetical protein compare
Atu3028 -0.5 -2.8 hypothetical protein compare
Atu4819 -0.5 -1.7 hypothetical protein compare
Atu0836 -0.5 -1.6 Glutathione-S-transferase compare
Atu3024 -0.5 -3.6 sugar ABC transporter permease compare
Atu5501 -0.5 -0.9 hypothetical protein compare
Atu3290 -0.5 -2.9 phosphomethylpyrimidine kinase compare
Atu4879 -0.5 -2.8 hypothetical protein compare
Atu2432 -0.5 -1.6 hypothetical protein compare
Atu2634 -0.5 -1.3 hypothetical protein compare
Atu5045 -0.5 -0.6 hypothetical protein compare
Atu6045 -0.5 -0.5 replication protein C compare
Atu4469 -0.5 -2.2 iron ABC transporter permease compare


Specific Phenotypes

For 6 genes in this experiment

For nitrogen source 5-Aminovaleric acid in Agrobacterium fabrum C58

For nitrogen source 5-Aminovaleric acid across organisms