Experiment set3IT023 for Pseudomonas simiae WCS417

Compare to:

Putrescine Dihydrochloride carbon source

200 most important genes:

  gene name fitness t score description  
PS417_01575 -9.3 -5.4 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PS417_18600 -7.9 -5.2 isopropylmalate isomerase compare
PS417_01855 -7.3 -4.6 phosphoribosyl-AMP cyclohydrolase compare
PS417_25720 -7.0 -8.3 anthranilate synthase component II compare
PS417_23805 -6.6 -6.4 acetolactate synthase 3 regulatory subunit compare
PS417_04415 -6.5 -9.0 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PS417_18585 -6.5 -6.3 3-isopropylmalate dehydrogenase compare
PS417_20125 -6.1 -5.1 phosphoribosylglycinamide formyltransferase compare
PS417_27040 -6.0 -3.3 3-phosphoglycerate dehydrogenase compare
PS417_07640 -5.9 -5.2 glyceraldehyde-3-phosphate dehydrogenase compare
PS417_23800 -5.9 -9.9 ketol-acid reductoisomerase compare
PS417_01565 -5.8 -5.6 imidazole glycerol phosphate synthase compare
PS417_18560 -5.8 -8.5 N-(5'-phosphoribosyl)anthranilate isomerase compare
PS417_26740 -5.8 -9.2 homoserine acetyltransferase compare
PS417_25725 -5.7 -17.6 anthranilate synthase component I compare
PS417_24745 -5.7 -3.9 gamma-glutamyl phosphate reductase compare
PS417_00185 -5.6 -5.5 tryptophan synthase subunit beta compare
PS417_18595 -5.6 -4.4 3-isopropylmalate dehydratase compare
PS417_23810 -5.6 -14.8 acetolactate synthase 3 catalytic subunit compare
PS417_04420 -5.4 -10.6 histidinol dehydrogenase compare
PS417_27105 -5.2 -7.1 spermidine/putrescine ABC transporter permease conserved
PS417_18530 -5.2 -7.2 O-succinylhomoserine sulfhydrylase compare
PS417_27115 -5.1 -12.3 putrescine ABC transporter, ATPase component (from data) conserved
PS417_16465 -5.0 -11.3 sirohydrochlorin ferrochelatase compare
PS417_27140 -4.9 -5.2 Gamma-glutamyl-putrescine synthetase (EC 6.3.1.11) (from data) conserved
PS417_01850 -4.8 -6.7 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PS417_23995 -4.6 -1.8 preprotein translocase subunit SecG compare
PS417_27110 -4.5 -6.9 spermidine/putrescine ABC transporter permease conserved
PS417_12290 -4.5 -9.6 sulfite reductase compare
PS417_01605 -4.4 -3.0 phosphoglycerate mutase compare
PS417_26745 -4.2 -4.2 methionine biosynthesis protein MetW compare
PS417_02510 -4.1 -3.1 ATP phosphoribosyltransferase regulatory subunit compare
PS417_05595 -4.1 -8.1 ornithine carbamoyltransferase compare
PS417_27125 -4.1 -9.5 spermidine/putrescine ABC transporter substrate-binding protein conserved
PS417_23545 -4.1 -2.9 gamma-glutamyl kinase compare
PS417_27195 -4.0 -2.1 N-acetylglutamate synthase compare
PS417_27130 -4.0 -12.1 Gamma-aminobutyrate:alpha-ketoglutarate aminotransferase (EC 2.6.1.19) (from data) conserved
PS417_25710 -4.0 -2.2 indole-3-glycerol-phosphate synthase compare
PS417_00180 -3.9 -4.3 tryptophan synthase subunit alpha compare
PS417_01580 -3.8 -1.9 imidazole glycerol phosphate synthase compare
PS417_21035 -3.8 -13.3 multidrug transporter compare
PS417_25715 -3.7 -5.2 anthranilate phosphoribosyltransferase compare
PS417_26040 -3.7 -4.4 malate synthase compare
PS417_01710 -3.5 -8.4 histidine utilization repressor compare
PS417_23110 -3.5 -6.2 2-isopropylmalate synthase compare
PS417_26730 -3.5 -1.9 pyrroline-5-carboxylate reductase compare
PS417_06375 -3.5 -1.9 deoxycytidine triphosphate deaminase compare
PS417_20985 -3.4 -5.1 porin compare
PS417_16570 -3.4 -13.4 isocitrate lyase compare
PS417_02415 -3.4 -5.3 phosphoserine phosphatase compare
PS417_27135 -3.3 -1.8 glutamine synthetase compare
PS417_20160 -3.2 -4.7 cysteine synthase compare
PS417_08125 -3.2 -2.1 prephenate dehydratase compare
PS417_23770 -3.1 -4.6 exodeoxyribonuclease V subunit alpha compare
PS417_26890 -3.0 -4.5 dihydroxy-acid dehydratase compare
PS417_27745 -2.9 -4.4 gamma-glutamyl-gamma-aminobutyraldehyde dehydrogenase (EC 1.2.1.99); 4-guanidinobutyraldehyde dehydrogenase (EC 1.2.1.54) (from data) conserved
PS417_02225 -2.8 -4.4 bifunctional glutamine-synthetase adenylyltransferase/deadenyltransferase compare
PS417_27795 -2.8 -1.9 orotate phosphoribosyltransferase compare
PS417_24155 -2.8 -4.6 ATP-binding protein compare
PS417_26985 -2.8 -4.7 phosphoenolpyruvate-protein phosphotransferase compare
PS417_01570 -2.8 -1.9 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase compare
PS417_24835 -2.8 -5.1 hypothetical protein compare
PS417_28050 -2.7 -2.9 hypothetical protein compare
PS417_04180 -2.6 -5.7 GntR family transcriptional regulator compare
PS417_27120 -2.5 -4.1 ABC transporter substrate-binding protein compare
PS417_26995 -2.5 -7.8 phosphoserine phosphatase compare
PS417_27875 -2.5 -9.5 histidine kinase compare
PS417_17480 -2.3 -6.2 branched-chain amino acid ABC transporter substrate-binding protein compare
PS417_21210 -2.3 -1.7 amidotransferase compare
PS417_12855 -2.3 -6.4 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_17485 -2.3 -4.6 membrane protein compare
PS417_17495 -2.1 -7.1 multidrug ABC transporter permease conserved
PS417_17435 -2.1 -9.4 dehydrogenase compare
PS417_22385 -2.1 -10.1 quinolinate synthase A compare
PS417_02485 -2.1 -7.9 tRNA delta(2)-isopentenylpyrophosphate transferase compare
PS417_08245 -2.0 -1.7 CDP-6-deoxy-L-threo-D-glycero-4-hexulose-3- dehydrase reductase compare
PS417_08230 -2.0 -3.2 lipopolysaccharide biosynthesis protein RfbH compare
PS417_21750 -2.0 -15.0 acetyl-CoA synthetase compare
PS417_08195 -2.0 -8.5 hypothetical protein compare
PS417_17490 -2.0 -3.4 ABC transporter ATP-binding protein compare
PS417_08580 -2.0 -7.0 histidine kinase compare
PS417_03925 -1.9 -7.0 nicotinate-nucleotide pyrophosphorylase compare
PS417_08685 -1.9 -0.8 flagellar hook-length control protein FliK compare
PS417_08200 -1.9 -5.4 hypothetical protein compare
PS417_27705 -1.9 -2.3 amino acid dehydrogenase compare
PS417_08545 -1.8 -2.8 aromatic ring-opening dioxygenase LigB compare
PS417_17450 -1.8 -6.1 amino acid ABC transporter substrate-binding protein conserved
PS417_25940 -1.8 -8.0 pyrroloquinoline quinone biosynthesis protein PqqE compare
PS417_22450 -1.8 -2.3 ATP-dependent DNA helicase RuvA compare
PS417_20665 -1.8 -8.2 hypothetical protein compare
PS417_23775 -1.7 -3.0 exodeoxyribonuclease V subunit beta compare
PS417_25930 -1.7 -7.4 pyrroloquinoline quinone biosynthesis protein PqqC compare
PS417_17455 -1.7 -4.0 cytochrome C compare
PS417_17420 -1.7 -6.2 ethanol oxidation regulatory protein ercA (from data) conserved
PS417_08225 -1.7 -4.8 acetolactate synthase compare
PS417_20610 -1.7 -1.8 hypothetical protein compare
PS417_21705 -1.6 -4.8 arginine N-succinyltransferase compare
PS417_25920 -1.6 -6.8 pyrroloquinoline quinone biosynthesis protein PqqF compare
PS417_12310 -1.6 -8.8 methionine synthase compare
PS417_08220 -1.6 -1.3 epimerase compare
PS417_01560 -1.5 -1.7 imidazoleglycerol-phosphate dehydratase compare
PS417_08155 -1.5 -2.2 integration host factor subunit beta compare
PS417_08205 -1.5 -3.3 acetyltransferase compare
PS417_22060 -1.5 -1.9 hypothetical protein compare
PS417_06530 -1.4 -2.1 membrane protein compare
PS417_22115 -1.4 -2.8 transcriptional regulator compare
PS417_11845 -1.4 -3.8 RpiR family transcriptional regulator compare
PS417_27710 -1.4 -5.0 AsnC family transcriptional regulator conserved
PS417_04595 -1.4 -3.5 cell division protein MraZ compare
PS417_21030 -1.4 -6.2 GntR family transcriptional regulator compare
PS417_17505 -1.3 -4.7 LuxR family transcriptional regulator compare
PS417_28515 -1.3 -3.0 16S rRNA methyltransferase compare
PS417_22445 -1.3 -3.1 ATP-dependent DNA helicase RuvB compare
PS417_17415 -1.3 -4.8 histidine kinase compare
PS417_10995 -1.3 -2.7 GntR family transcriptional regulator compare
PS417_21000 -1.3 -2.8 CrfX protein compare
PS417_02555 -1.2 -9.4 exoribonuclease R compare
PS417_21510 -1.2 -2.1 histidine kinase compare
PS417_22520 -1.2 -2.2 histidine kinase compare
PS417_27800 -1.2 -4.5 exodeoxyribonuclease III compare
PS417_27305 -1.1 -5.7 5-formyltetrahydrofolate cyclo-ligase compare
PS417_23950 -1.1 -3.2 polynucleotide phosphorylase/polyadenylase compare
PS417_04410 -1.1 -1.4 hypothetical protein compare
PS417_09235 -1.1 -1.2 molecular chaperone compare
PS417_27585 -1.1 -2.9 diaminopimelate epimerase compare
PS417_27010 -1.1 -7.1 threonine dehydratase compare
PS417_10405 -1.1 -1.5 filamentous hemagglutinin compare
PS417_27870 -1.1 -3.9 ATP-dependent DNA helicase RecG compare
PS417_09470 -1.1 -1.6 hypothetical protein compare
PS417_16510 -1.0 -3.0 Clp protease ClpX compare
PS417_26510 -1.0 -5.2 5,10-methylenetetrahydrofolate reductase compare
PS417_23095 -1.0 -1.2 exodeoxyribonuclease compare
PS417_17240 -1.0 -2.9 trigger factor compare
PS417_24535 -1.0 -1.6 membrane protein compare
PS417_06945 -1.0 -1.3 membrane protein compare
PS417_17515 -1.0 -3.5 GfdT protein compare
PS417_01210 -1.0 -4.2 hypothetical protein compare
PS417_00650 -1.0 -0.9 LysR family transcriptional regulator compare
PS417_18505 -1.0 -6.7 gamma-glutamylputrescine oxidoreductase compare
PS417_02005 -1.0 -5.7 glutamate synthase compare
PS417_06895 -0.9 -3.0 DNA-binding protein compare
PS417_01735 -0.9 -2.2 ABC transporter permease compare
PS417_08730 -0.9 -1.5 cytochrome C compare
PS417_06200 -0.9 -4.3 protein-PII uridylyltransferase compare
PS417_02895 -0.9 -1.7 precorrin-6Y C5,15-methyltransferase compare
PS417_17000 -0.9 -2.3 MerR family transcriptional regulator compare
PS417_23900 -0.9 -5.7 poly(A) polymerase compare
PS417_01915 -0.9 -1.0 ATP-dependent protease ATP-binding subunit HslU compare
PS417_18105 -0.9 -1.5 iron-dicitrate transporter substrate-binding subunit compare
PS417_13510 -0.9 -1.3 polyketide cyclase compare
PS417_22375 -0.9 -1.0 cold-shock protein compare
PS417_11485 -0.9 -2.1 AraC family transcriptional regulator compare
PS417_22380 -0.9 -2.8 hypothetical protein compare
PS417_07620 -0.9 -1.4 beta-hexosaminidase compare
PS417_20620 -0.9 -4.5 glycosyl transferase family 2 compare
PS417_21125 -0.9 -3.3 phosphoadenosine phosphosulfate reductase compare
PS417_17510 -0.9 -5.5 histidine kinase compare
PS417_22990 -0.9 -1.4 iron dicitrate transport regulator FecR compare
PS417_15650 -0.9 -1.5 glutamine amidotransferase compare
PS417_08135 -0.9 -5.0 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_02000 -0.9 -6.2 glutamate synthase compare
PS417_17425 -0.9 -3.6 hypothetical protein compare
PS417_07635 -0.8 -5.5 transcription-repair coupling factor compare
PS417_05550 -0.8 -3.2 amino acid ABC transporter permease compare
PS417_27865 -0.8 -2.8 LysR family transcriptional regulator compare
PS417_27205 -0.8 -3.3 adenylate cyclase compare
PS417_00195 -0.8 -2.0 hypothetical protein compare
PS417_16475 -0.8 -2.4 camphor resistance protein CrcB compare
PS417_21480 -0.8 -1.5 23S rRNA pseudouridylate synthase compare
PS417_04380 -0.8 -1.2 ABC transporter permease compare
PS417_26770 -0.8 -2.2 tRNA (guanine-N7)-methyltransferase compare
PS417_27035 -0.8 -2.9 FAD-linked oxidase compare
PS417_02070 -0.8 -0.9 membrane protein compare
PS417_08945 -0.8 -5.7 heat shock protein 90 compare
PS417_18590 -0.8 -3.9 SAM-dependent methyltransferase compare
PS417_19015 -0.8 -2.3 LysR family transcriptional regulator compare
PS417_24810 -0.8 -4.7 aldehyde dehydrogenase compare
PS417_19555 -0.8 -2.8 RNA polymerase sigma70 compare
PS417_22570 -0.8 -0.9 H-NS histone compare
PS417_21630 -0.8 -2.2 magnesium transporter compare
PS417_11530 -0.7 -3.1 amidase compare
PS417_01095 -0.7 -0.9 amino acid ABC transporter ATP-binding protein compare
PS417_23390 -0.7 -3.8 ubiquinol oxidase subunit II compare
PS417_12075 -0.7 -3.5 DNA-binding protein compare
PS417_25730 -0.7 -2.3 phosphoglycolate phosphatase compare
PS417_00295 -0.7 -3.4 hypothetical protein compare
PS417_02975 -0.7 -1.8 3-dehydroquinate dehydratase compare
PS417_05540 -0.7 -2.4 histidine kinase compare
PS417_24650 -0.7 -1.5 membrane protein compare
PS417_20855 -0.7 -1.3 hypothetical protein compare
PS417_24460 -0.7 -1.8 hypothetical protein compare
PS417_09210 -0.7 -1.3 TetR family transcriptional regulator compare
PS417_19965 -0.7 -4.5 histidine kinase compare
PS417_05010 -0.7 -1.1 IclR family transcriptional regulator compare
PS417_27435 -0.7 -2.8 polyphosphate kinase compare
PS417_23215 -0.7 -2.2 RNA methyltransferase compare
PS417_05695 -0.7 -3.3 transcriptional regulator compare
PS417_17980 -0.7 -1.0 ABC transporter permease compare
PS417_22210 -0.7 -1.6 AraC family transcriptional regulator compare
PS417_20645 -0.7 -4.5 membrane protein compare


Specific Phenotypes

For 17 genes in this experiment

For carbon source Putrescine Dihydrochloride in Pseudomonas simiae WCS417

For carbon source Putrescine Dihydrochloride across organisms