Experiment set3IT021 for Pseudomonas simiae WCS417

Compare to:

Sodium octanoate carbon source

200 most important genes:

  gene name fitness t score description  
PS417_18585 -6.8 -6.6 3-isopropylmalate dehydrogenase compare
PS417_18600 -6.6 -4.8 isopropylmalate isomerase compare
PS417_26740 -6.5 -11.2 homoserine acetyltransferase compare
PS417_07640 -6.3 -4.6 glyceraldehyde-3-phosphate dehydrogenase compare
PS417_04415 -6.2 -9.5 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PS417_23805 -6.0 -7.2 acetolactate synthase 3 regulatory subunit compare
PS417_01575 -5.8 -5.4 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PS417_01850 -5.8 -6.9 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PS417_25720 -5.8 -10.5 anthranilate synthase component II compare
PS417_00725 -5.7 -7.8 RND transporter conserved
PS417_23915 -5.6 -8.4 pantoate--beta-alanine ligase compare
PS417_22065 -5.6 -10.6 Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3) (from data) conserved
PS417_00180 -5.5 -3.8 tryptophan synthase subunit alpha compare
PS417_04380 -5.5 -3.2 ABC transporter permease compare
PS417_01855 -5.5 -4.7 phosphoribosyl-AMP cyclohydrolase compare
PS417_27040 -5.4 -4.2 3-phosphoglycerate dehydrogenase compare
PS417_23800 -5.3 -14.5 ketol-acid reductoisomerase compare
PS417_07710 -5.2 -11.1 membrane protein compare
PS417_02510 -5.2 -8.3 ATP phosphoribosyltransferase regulatory subunit compare
PS417_25725 -5.1 -17.9 anthranilate synthase component I compare
PS417_12855 -5.1 -6.0 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_04420 -5.1 -11.8 histidinol dehydrogenase compare
PS417_00710 -5.1 -14.6 fusaric acid resistance protein conserved
PS417_22520 -5.0 -4.3 histidine kinase compare
PS417_18560 -4.9 -9.5 N-(5'-phosphoribosyl)anthranilate isomerase compare
PS417_18595 -4.9 -4.6 3-isopropylmalate dehydratase compare
PS417_04385 -4.9 -6.2 organic solvent ABC transporter substrate-binding protein compare
PS417_16465 -4.9 -10.2 sirohydrochlorin ferrochelatase compare
PS417_24745 -4.8 -6.2 gamma-glutamyl phosphate reductase compare
PS417_02005 -4.8 -14.6 glutamate synthase compare
PS417_23810 -4.7 -11.9 acetolactate synthase 3 catalytic subunit compare
PS417_23110 -4.6 -10.6 2-isopropylmalate synthase compare
PS417_23545 -4.6 -4.3 gamma-glutamyl kinase compare
PS417_02270 -4.6 -9.8 carbamoyltransferase compare
PS417_09210 -4.6 -3.4 TetR family transcriptional regulator compare
PS417_17565 -4.6 -5.3 branched-chain amino acid aminotransferase compare
PS417_00705 -4.4 -2.9 MarR family transcriptional regulator compare
PS417_23910 -4.3 -10.8 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PS417_04390 -4.3 -4.0 toluene tolerance protein compare
PS417_02555 -4.3 -20.6 exoribonuclease R compare
PS417_18530 -4.3 -6.7 O-succinylhomoserine sulfhydrylase compare
PS417_26745 -4.2 -7.5 methionine biosynthesis protein MetW compare
PS417_25960 -4.2 -12.7 Acyl-CoA dehydrogenase (EC 1.3.8.7) (from data) conserved
PS417_25710 -4.2 -1.9 indole-3-glycerol-phosphate synthase compare
PS417_16570 -4.1 -7.6 isocitrate lyase compare
PS417_27835 -4.1 -6.4 endoribonuclease compare
PS417_00720 -4.1 -10.4 membrane protein conserved
PS417_00185 -4.1 -6.3 tryptophan synthase subunit beta compare
PS417_28220 -4.1 -3.7 LysR family transcriptional regulator compare
PS417_05595 -4.0 -9.5 ornithine carbamoyltransferase compare
PS417_20125 -4.0 -3.9 phosphoribosylglycinamide formyltransferase compare
PS417_01580 -4.0 -1.7 imidazole glycerol phosphate synthase compare
PS417_12290 -3.9 -7.4 sulfite reductase compare
PS417_27875 -3.8 -12.8 histidine kinase compare
PS417_02000 -3.8 -16.8 glutamate synthase compare
PS417_07510 -3.8 -8.2 aspartyl beta-hydroxylase compare
PS417_25715 -3.8 -5.9 anthranilate phosphoribosyltransferase compare
PS417_26995 -3.7 -9.7 phosphoserine phosphatase compare
PS417_00715 -3.6 -7.8 required for octanoate transport, together with NodT, MFP, and FUSC proteins (PS417_00725, PS417_00720, PS417_00710) (from data) conserved
PS417_23390 -3.6 -9.5 ubiquinol oxidase subunit II compare
PS417_17390 -3.6 -6.3 DSBA oxidoreductase compare
PS417_26730 -3.6 -1.7 pyrroline-5-carboxylate reductase compare
PS417_21750 -3.6 -19.3 acetyl-CoA synthetase compare
PS417_02485 -3.5 -6.2 tRNA delta(2)-isopentenylpyrophosphate transferase compare
PS417_08125 -3.5 -2.0 prephenate dehydratase compare
PS417_23385 -3.5 -11.9 cytochrome o ubiquinol oxidase subunit I compare
PS417_01565 -3.5 -3.4 imidazole glycerol phosphate synthase compare
PS417_02415 -3.5 -6.7 phosphoserine phosphatase compare
PS417_21010 -3.5 -7.6 ribonuclease activity regulator protein RraA conserved
PS417_24155 -3.5 -4.7 ATP-binding protein compare
PS417_07575 -3.4 -5.7 multifunctional fatty acid oxidation complex subunit alpha compare
PS417_26890 -3.4 -4.9 dihydroxy-acid dehydratase compare
PS417_26040 -3.3 -4.9 malate synthase compare
PS417_23380 -3.3 -4.6 cytochrome o ubiquinol oxidase subunit III compare
PS417_27245 -3.3 -6.1 aminotransferase DegT compare
PS417_27800 -3.3 -10.4 exodeoxyribonuclease III compare
PS417_28070 -3.3 -6.9 phosphate ABC transporter ATP-binding protein compare
PS417_17395 -3.2 -11.3 MFS transporter compare
PS417_23900 -3.1 -11.9 poly(A) polymerase compare
PS417_20160 -3.1 -2.8 cysteine synthase compare
PS417_26985 -3.1 -7.4 phosphoenolpyruvate-protein phosphotransferase compare
PS417_05840 -3.1 -4.0 LuxR family transcriptional regulator compare
PS417_21125 -3.1 -8.2 phosphoadenosine phosphosulfate reductase compare
PS417_01560 -3.1 -4.0 imidazoleglycerol-phosphate dehydratase compare
PS417_27795 -3.1 -1.8 orotate phosphoribosyltransferase compare
PS417_25975 -3.1 -7.4 Acyl-CoA dehydrogenase (EC 1.3.8.7) (from data) conserved
PS417_21705 -3.1 -7.8 arginine N-succinyltransferase compare
PS417_24765 -3.0 -4.9 membrane protein compare
PS417_24810 -3.0 -9.1 aldehyde dehydrogenase compare
PS417_27010 -3.0 -10.5 threonine dehydratase compare
PS417_09325 -3.0 -4.3 peptidase S41 compare
PS417_01605 -3.0 -3.0 phosphoglycerate mutase compare
PS417_24805 -2.9 -13.8 Fis family transcriptional regulator compare
PS417_20985 -2.9 -4.3 porin compare
PS417_02255 -2.9 -2.3 lipopolysaccharide kinase compare
PS417_04375 -2.8 -4.0 ABC transporter ATP-binding protein compare
PS417_27195 -2.8 -2.5 N-acetylglutamate synthase compare
PS417_04650 -2.7 -2.5 D-alanine--D-alanine ligase compare
PS417_18690 -2.7 -5.2 aromatic amino acid aminotransferase compare
PS417_27035 -2.7 -6.7 FAD-linked oxidase compare
PS417_23370 -2.7 -4.6 protoheme IX farnesyltransferase compare
PS417_04735 -2.5 -7.5 LysR family transcriptional regulator conserved
PS417_08430 -2.5 -9.3 phospho-2-dehydro-3-deoxyheptonate aldolase conserved
PS417_04365 -2.5 -2.0 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase compare
PS417_01710 -2.5 -7.2 histidine utilization repressor compare
PS417_08540 -2.5 -4.4 RNA helicase compare
PS417_04875 -2.5 -2.4 molybdenum cofactor biosynthesis protein MoaE compare
PS417_06770 -2.4 -7.4 multidrug transporter compare
PS417_23995 -2.4 -1.6 preprotein translocase subunit SecG compare
PS417_08665 -2.4 -5.9 molybdopterin-guanine dinucleotide biosynthesis protein A compare
PS417_02725 -2.4 -5.1 hypothetical protein compare
PS417_19965 -2.3 -11.7 histidine kinase compare
PS417_06775 -2.3 -5.8 antibiotic transporter compare
PS417_28080 -2.3 -9.5 phosphate ABC transporter permease compare
PS417_06060 -2.3 -11.3 phosphoenolpyruvate carboxylase conserved
PS417_08670 -2.2 -5.4 molybdopterin biosynthesis protein B compare
PS417_23375 -2.2 -2.7 cytochrome C oxidase compare
PS417_06375 -2.2 -1.6 deoxycytidine triphosphate deaminase compare
PS417_07270 -2.2 -6.0 LysR family transcriptional regulator conserved
PS417_22570 -2.2 -1.7 H-NS histone compare
PS417_24835 -2.1 -4.6 hypothetical protein compare
PS417_12375 -2.1 -2.4 serine/threonine protein phosphatase compare
PS417_13805 -2.1 -12.3 4-amino-4-deoxy-L-arabinose transferase compare
PS417_07615 -2.1 -8.6 TetR family transcriptional regulator compare
PS417_04865 -2.0 -4.7 molybdenum cofactor biosynthesis protein MoaC compare
PS417_13820 -2.0 -6.3 UDP-glucose 6-dehydrogenase compare
PS417_27610 -2.0 -5.1 hypothetical protein compare
PS417_04585 -2.0 -2.9 hypothetical protein compare
PS417_08380 -2.0 -3.9 ABC transporter ATP-binding protein compare
PS417_17505 -1.9 -4.3 LuxR family transcriptional regulator compare
PS417_21700 -1.9 -5.0 arginine N-succinyltransferase compare
PS417_27435 -1.9 -7.7 polyphosphate kinase compare
PS417_24615 -1.9 -1.3 hypothetical protein compare
PS417_23770 -1.9 -3.2 exodeoxyribonuclease V subunit alpha compare
PS417_11700 -1.9 -11.3 ligand-gated channel compare
PS417_13800 -1.9 -3.1 4-deoxy-4-formamido-L-arabinose-phospho-UDP deformylase compare
PS417_08170 -1.9 -9.3 capsular biosynthesis protein compare
PS417_22445 -1.9 -4.8 ATP-dependent DNA helicase RuvB compare
PS417_13795 -1.9 -9.0 UDP-4-amino-4-deoxy-L-arabinose formyltransferase compare
PS417_06680 -1.8 -12.3 nuclease PIN compare
PS417_13120 -1.8 -7.1 aspartyl beta-hydroxylase conserved
PS417_03625 -1.8 -7.2 lipid A 3-O-deacylase compare
PS417_01265 -1.8 -10.6 CbbBc protein conserved
PS417_27305 -1.8 -8.3 5-formyltetrahydrofolate cyclo-ligase compare
PS417_13790 -1.8 -5.7 UDP phosphate 4-deoxy-4-formamido-L-arabinose transferase compare
PS417_27135 -1.8 -1.4 glutamine synthetase compare
PS417_19305 -1.7 -4.5 acireductone dioxygenase compare
PS417_17420 -1.7 -7.5 ethanol oxidation regulatory protein ercA (from data) compare
PS417_12595 -1.6 -2.2 transcriptional regulator compare
PS417_25920 -1.6 -7.3 pyrroloquinoline quinone biosynthesis protein PqqF compare
PS417_22210 -1.6 -2.9 AraC family transcriptional regulator compare
PS417_11705 -1.6 -10.1 cyclic peptide transporter compare
PS417_21395 -1.6 -7.7 radical SAM protein compare
PS417_11845 -1.5 -5.2 RpiR family transcriptional regulator compare
PS417_08580 -1.5 -5.9 histidine kinase compare
PS417_21035 -1.5 -7.9 multidrug transporter compare
PS417_28085 -1.5 -7.6 phosphate-binding protein compare
PS417_01210 -1.5 -8.6 hypothetical protein compare
PS417_11930 -1.5 -5.2 hypothetical protein compare
PS417_00755 -1.5 -0.9 biofilm PGA synthesis protein PgaD compare
PS417_22815 -1.5 -8.1 permease compare
PS417_24710 -1.5 -4.3 lipoprotein compare
PS417_27605 -1.5 -4.8 hypothetical protein compare
PS417_23950 -1.4 -2.7 polynucleotide phosphorylase/polyadenylase compare
PS417_05570 -1.4 -5.3 DeoR faimly transcriptional regulator compare
PS417_22450 -1.4 -1.8 ATP-dependent DNA helicase RuvA compare
PS417_28515 -1.4 -3.2 16S rRNA methyltransferase compare
PS417_03705 -1.4 -2.4 2-alkenal reductase compare
PS417_07140 -1.4 -3.2 peptidase M48 compare
PS417_03310 -1.4 -5.9 carbonate dehydratase compare
PS417_01570 -1.4 -1.1 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase compare
PS417_08135 -1.4 -6.3 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_17415 -1.4 -5.5 histidine kinase compare
PS417_25650 -1.4 -4.0 anhydro-N-acetylmuramic acid kinase compare
PS417_19600 -1.4 -1.7 exonuclease compare
PS417_01950 -1.3 -3.7 malate dehydrogenase compare
PS417_05165 -1.3 -2.9 cytosol aminopeptidase compare
PS417_06645 -1.3 -7.2 RNA polymerase-associated protein RapA compare
PS417_18355 -1.3 -5.7 DNA-binding protein compare
PS417_28075 -1.3 -3.0 phosphate ABC transporter permease compare
PS417_12310 -1.3 -8.0 methionine synthase compare
PS417_05455 -1.3 -5.2 XRE family transcriptional regulator compare
PS417_06370 -1.3 -2.0 cold-shock protein compare
PS417_21210 -1.3 -1.9 amidotransferase compare
PS417_07120 -1.2 -3.7 RNA polymerase sigma-H factor compare
PS417_05515 -1.2 -2.7 hypothetical protein compare
PS417_08025 -1.2 -1.6 acetylornithine aminotransferase compare
PS417_19520 -1.2 -2.5 transcriptional regulator compare
PS417_13305 -1.2 -1.6 hypothetical protein compare
PS417_06200 -1.2 -3.3 protein-PII uridylyltransferase compare
PS417_18590 -1.2 -2.3 SAM-dependent methyltransferase compare
PS417_17495 -1.2 -5.7 multidrug ABC transporter permease compare
PS417_17485 -1.2 -5.0 membrane protein compare
PS417_10815 -1.2 -5.6 TetR family transcriptional regulator compare
PS417_07170 -1.2 -2.3 hypothetical protein compare
PS417_21690 -1.2 -4.7 N-succinylarginine dihydrolase compare
PS417_10675 -1.2 -1.3 TetR family transcriptional regulator compare
PS417_21510 -1.2 -1.6 histidine kinase compare
PS417_25270 -1.1 -3.1 NrdR family transcriptional regulator compare
PS417_04270 -1.1 -6.3 ribonuclease G compare


Specific Phenotypes

For 30 genes in this experiment

For carbon source Sodium octanoate in Pseudomonas simiae WCS417

For carbon source Sodium octanoate across organisms