Experiment set3IT020 for Pseudomonas simiae WCS417

Compare to:

D-Mannose carbon source

200 most important genes:

  gene name fitness t score description  
PS417_01565 -6.4 -5.9 imidazole glycerol phosphate synthase compare
PS417_01855 -6.4 -5.6 phosphoribosyl-AMP cyclohydrolase compare
PS417_01575 -6.3 -8.1 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PS417_26740 -6.2 -10.6 homoserine acetyltransferase compare
PS417_25720 -6.1 -9.5 anthranilate synthase component II compare
PS417_18585 -6.0 -8.2 3-isopropylmalate dehydrogenase compare
PS417_25725 -5.7 -17.6 anthranilate synthase component I compare
PS417_18600 -5.6 -4.9 isopropylmalate isomerase compare
PS417_04415 -5.6 -10.9 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PS417_23800 -5.6 -14.4 ketol-acid reductoisomerase compare
PS417_02510 -5.5 -7.0 ATP phosphoribosyltransferase regulatory subunit compare
PS417_23805 -5.4 -7.9 acetolactate synthase 3 regulatory subunit compare
PS417_18560 -5.4 -14.8 N-(5'-phosphoribosyl)anthranilate isomerase compare
PS417_24745 -5.4 -6.4 gamma-glutamyl phosphate reductase compare
PS417_27040 -5.2 -5.8 3-phosphoglycerate dehydrogenase compare
PS417_04420 -5.1 -11.2 histidinol dehydrogenase compare
PS417_27795 -5.1 -2.0 orotate phosphoribosyltransferase compare
PS417_23545 -5.1 -3.8 gamma-glutamyl kinase compare
PS417_02005 -5.0 -14.8 glutamate synthase compare
PS417_23995 -4.9 -1.9 preprotein translocase subunit SecG compare
PS417_00185 -4.6 -6.3 tryptophan synthase subunit beta compare
PS417_23810 -4.5 -11.0 acetolactate synthase 3 catalytic subunit compare
PS417_16465 -4.4 -14.3 sirohydrochlorin ferrochelatase compare
PS417_01850 -4.3 -11.9 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PS417_12855 -4.3 -7.1 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_26745 -4.3 -6.6 methionine biosynthesis protein MetW compare
PS417_03965 -4.1 -11.0 fructose-specific PTS system (fructose 1-phosphate forming), EI, Hpr, and EII-A components (from data) conserved
PS417_18530 -4.0 -4.0 O-succinylhomoserine sulfhydrylase compare
PS417_12290 -3.9 -8.6 sulfite reductase compare
PS417_28220 -3.8 -3.8 LysR family transcriptional regulator compare
PS417_25715 -3.8 -6.2 anthranilate phosphoribosyltransferase compare
PS417_18595 -3.7 -3.9 3-isopropylmalate dehydratase compare
PS417_02000 -3.7 -16.7 glutamate synthase compare
PS417_26730 -3.7 -2.0 pyrroline-5-carboxylate reductase compare
PS417_05595 -3.6 -7.0 ornithine carbamoyltransferase compare
PS417_23110 -3.5 -7.0 2-isopropylmalate synthase compare
PS417_22150 -3.5 -9.0 D-mannose isomerase (EC 5.3.1.7) (from data) conserved
PS417_25710 -3.5 -2.7 indole-3-glycerol-phosphate synthase compare
PS417_02415 -3.4 -6.0 phosphoserine phosphatase compare
PS417_24155 -3.4 -5.1 ATP-binding protein compare
PS417_12695 -3.4 -7.1 mannitol dehydrogenase compare
PS417_03975 -3.4 -13.7 FruA conserved
PS417_12690 -3.3 -11.4 xylulose kinase compare
PS417_01580 -3.3 -3.0 imidazole glycerol phosphate synthase compare
PS417_27195 -3.3 -2.0 N-acetylglutamate synthase compare
PS417_00180 -3.2 -3.7 tryptophan synthase subunit alpha compare
PS417_12725 -2.9 -6.8 AraC family transcriptional regulator conserved
PS417_02485 -2.9 -10.4 tRNA delta(2)-isopentenylpyrophosphate transferase compare
PS417_22690 -2.9 -8.2 phosphogluconate dehydratase compare
PS417_20985 -2.9 -5.7 porin compare
PS417_26890 -2.7 -5.1 dihydroxy-acid dehydratase compare
PS417_06375 -2.7 -2.0 deoxycytidine triphosphate deaminase compare
PS417_01605 -2.7 -3.2 phosphoglycerate mutase compare
PS417_03970 -2.6 -2.7 1-phosphofructokinase compare
PS417_20125 -2.6 -5.6 phosphoribosylglycinamide formyltransferase compare
PS417_23770 -2.4 -4.7 exodeoxyribonuclease V subunit alpha compare
PS417_12710 -2.4 -7.9 ABC transporter for D-Mannitol and D-Sorbitol, permease component 2 (from data) conserved
PS417_20160 -2.4 -3.7 cysteine synthase compare
PS417_23950 -2.3 -2.7 polynucleotide phosphorylase/polyadenylase compare
PS417_27800 -2.2 -8.0 exodeoxyribonuclease III compare
PS417_12705 -2.2 -9.1 ABC transporter for D-Mannitol and D-Sorbitol, permease component 1 (from data) conserved
PS417_12715 -2.1 -10.2 ABC transporter for D-Mannitol and D-Sorbitol, periplasmic substrate-binding protein (from data) conserved
PS417_26995 -2.1 -12.0 phosphoserine phosphatase compare
PS417_27835 -2.1 -11.2 endoribonuclease compare
PS417_22445 -1.9 -5.2 ATP-dependent DNA helicase RuvB compare
PS417_14940 -1.8 -3.5 LysR family transcriptional regulator compare
PS417_12700 -1.8 -4.9 ABC transporter for D-Mannitol and D-Sorbitol, ATPase component (from data) compare
PS417_08230 -1.8 -2.5 lipopolysaccharide biosynthesis protein RfbH compare
PS417_13510 -1.8 -2.2 polyketide cyclase compare
PS417_22695 -1.8 -11.1 glyceraldehyde-3-phosphate dehydrogenase compare
PS417_03925 -1.8 -8.0 nicotinate-nucleotide pyrophosphorylase compare
PS417_08245 -1.7 -1.7 CDP-6-deoxy-L-threo-D-glycero-4-hexulose-3- dehydrase reductase compare
PS417_22375 -1.7 -1.7 cold-shock protein compare
PS417_01560 -1.7 -2.2 imidazoleglycerol-phosphate dehydratase compare
PS417_08220 -1.7 -1.5 epimerase compare
PS417_26985 -1.6 -5.6 phosphoenolpyruvate-protein phosphotransferase compare
PS417_08125 -1.6 -1.9 prephenate dehydratase compare
PS417_04410 -1.5 -2.0 hypothetical protein compare
PS417_20635 -1.5 -1.5 ABC transporter ATP-binding protein compare
PS417_00160 -1.5 -3.3 2-dehydro-3-deoxy-6-phosphogalactonate aldolase compare
PS417_11430 -1.4 -7.4 EamA compare
PS417_05650 -1.4 -4.0 leucyl-tRNA synthetase compare
PS417_22385 -1.4 -6.9 quinolinate synthase A compare
PS417_22680 -1.3 -5.0 chemotaxis protein CheY compare
PS417_09210 -1.3 -2.9 TetR family transcriptional regulator compare
PS417_02805 -1.3 -2.3 urease subunit gamma compare
PS417_20665 -1.2 -7.2 hypothetical protein compare
PS417_06680 -1.2 -7.9 nuclease PIN compare
PS417_09235 -1.2 -1.5 molecular chaperone compare
PS417_21750 -1.2 -9.5 acetyl-CoA synthetase compare
PS417_12310 -1.2 -8.1 methionine synthase compare
PS417_02555 -1.2 -9.5 exoribonuclease R compare
PS417_23900 -1.2 -7.0 poly(A) polymerase compare
PS417_22570 -1.1 -1.4 H-NS histone compare
PS417_01210 -1.1 -6.9 hypothetical protein compare
PS417_18355 -1.1 -7.3 DNA-binding protein compare
PS417_14980 -1.1 -1.4 universal stress protein UspA compare
PS417_09725 -1.1 -5.9 transporter compare
PS417_24835 -1.1 -4.3 hypothetical protein compare
PS417_20610 -1.1 -1.4 hypothetical protein compare
PS417_08195 -1.1 -6.2 hypothetical protein compare
PS417_09010 -1.0 -2.6 phosphohistidine phosphatase compare
PS417_08205 -1.0 -2.4 acetyltransferase compare
PS417_04270 -1.0 -5.6 ribonuclease G compare
PS417_07950 -1.0 -3.6 MFS transporter compare
PS417_27610 -1.0 -6.3 hypothetical protein compare
PS417_26695 -1.0 -1.4 uracil phosphoribosyltransferase compare
PS417_17240 -1.0 -4.5 trigger factor compare
PS417_16715 -1.0 -2.1 DoxX family protein compare
PS417_20140 -1.0 -3.5 nucleoprotein/polynucleotide-associated enzyme compare
PS417_26040 -1.0 -4.6 malate synthase compare
PS417_07115 -0.9 -7.3 L-aspartate oxidase compare
PS417_13800 -0.9 -4.0 4-deoxy-4-formamido-L-arabinose-phospho-UDP deformylase compare
PS417_21210 -0.9 -1.9 amidotransferase compare
PS417_16990 -0.9 -5.2 acyl-CoA dehydrogenase compare
PS417_11450 -0.9 -3.2 AraC family transcriptional regulator compare
PS417_07170 -0.9 -2.6 hypothetical protein compare
PS417_22870 -0.9 -2.7 lipoprotein compare
PS417_24800 -0.9 -4.3 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase compare
PS417_24265 -0.9 -3.5 ABC transporter ATP-binding protein compare
PS417_05165 -0.9 -1.3 cytosol aminopeptidase compare
PS417_18780 -0.9 -1.9 flavin reductase compare
PS417_27875 -0.9 -3.5 histidine kinase compare
PS417_08540 -0.9 -2.7 RNA helicase compare
PS417_23775 -0.8 -1.3 exodeoxyribonuclease V subunit beta compare
PS417_00825 -0.8 -2.5 recombinase RecF compare
PS417_08155 -0.8 -2.5 integration host factor subunit beta compare
PS417_08225 -0.8 -4.3 acetolactate synthase compare
PS417_21070 -0.8 -2.6 aconitate hydratase compare
PS417_22210 -0.8 -2.3 AraC family transcriptional regulator compare
PS417_21990 -0.8 -2.1 LacI family transcriptional regulator compare
PS417_24935 -0.8 -1.1 hypothetical protein compare
PS417_26850 -0.8 -0.9 twin-arginine translocation pathway signal protein compare
PS417_13165 -0.8 -1.5 peroxidase compare
PS417_27595 -0.8 -1.9 recombinase XerC compare
PS417_27605 -0.8 -4.0 hypothetical protein compare
PS417_17450 -0.8 -2.6 amino acid ABC transporter substrate-binding protein compare
PS417_17480 -0.8 -4.4 branched-chain amino acid ABC transporter substrate-binding protein compare
PS417_22145 -0.8 -4.3 glucose/xylose ABC transporter, periplasmic substrate-binding component (from data) compare
PS417_06175 -0.8 -4.4 cysteine sulfinate desulfinase compare
PS417_18310 -0.8 -1.3 hypothetical protein compare
PS417_28100 -0.8 -3.5 glucose-6-phosphate 1-epimerase [EC: 5.1.3.15] (from data) compare
PS417_04965 -0.8 -2.6 hypothetical protein compare
PS417_17415 -0.8 -2.5 histidine kinase compare
PS417_27305 -0.8 -3.5 5-formyltetrahydrofolate cyclo-ligase compare
PS417_25175 -0.8 -2.0 hypothetical protein compare
PS417_05905 -0.7 -1.9 hypothetical protein compare
PS417_11445 -0.7 -3.2 enoyl-CoA hydratase compare
PS417_06200 -0.7 -3.1 protein-PII uridylyltransferase compare
PS417_16490 -0.7 -1.9 cell division protein FtsK compare
PS417_24370 -0.7 -0.8 (2Fe-2S)-binding protein compare
PS417_08170 -0.7 -5.2 capsular biosynthesis protein compare
PS417_08685 -0.7 -1.0 flagellar hook-length control protein FliK compare
PS417_15135 -0.7 -0.8 hypothetical protein compare
PS417_17495 -0.7 -3.6 multidrug ABC transporter permease compare
PS417_13490 -0.7 -1.8 hypothetical protein compare
PS417_06945 -0.7 -1.1 membrane protein compare
PS417_12840 -0.7 -2.0 TetR family transcriptional regulator compare
PS417_28510 -0.7 -4.1 chromosome partitioning protein compare
PS417_27035 -0.7 -2.3 FAD-linked oxidase compare
PS417_08380 -0.7 -3.7 ABC transporter ATP-binding protein compare
PS417_05100 -0.7 -1.9 RNA polymerase sigma factor compare
PS417_27535 -0.7 -4.1 chemotaxis protein CheY compare
PS417_13970 -0.7 -4.0 glycerate kinase compare
PS417_07615 -0.7 -3.3 TetR family transcriptional regulator compare
PS417_08150 -0.7 -2.2 hypothetical protein compare
PS417_19160 -0.7 -3.4 hypothetical protein compare
PS417_00845 -0.7 -1.5 transcriptional regulator compare
PS417_08200 -0.7 -1.9 hypothetical protein compare
PS417_00475 -0.7 -2.4 membrane protein compare
PS417_26510 -0.7 -4.8 5,10-methylenetetrahydrofolate reductase compare
PS417_01570 -0.7 -0.5 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase compare
PS417_02480 -0.7 -2.3 DNA mismatch repair protein compare
PS417_15725 -0.7 -3.5 nitrate/nitrite transporter NarK compare
PS417_13140 -0.7 -1.8 oxidoreductase compare
PS417_24615 -0.7 -1.1 hypothetical protein compare
PS417_27245 -0.7 -3.0 aminotransferase DegT compare
PS417_21510 -0.7 -1.0 histidine kinase compare
PS417_26900 -0.7 -1.3 L-cystine transporter tcyP compare
PS417_03815 -0.7 -2.4 DNA transporter compare
PS417_24455 -0.6 -2.6 membrane protein compare
PS417_03310 -0.6 -2.7 carbonate dehydratase compare
PS417_18300 -0.6 -2.3 transcriptional regulator compare
PS417_17435 -0.6 -4.1 dehydrogenase compare
PS417_03260 -0.6 -1.6 5S ribosomal RNA compare
PS417_08510 -0.6 -0.9 LysR family transcriptional regulator compare
PS417_04385 -0.6 -3.1 organic solvent ABC transporter substrate-binding protein compare
PS417_27425 -0.6 -4.1 exopolyphosphatase compare
PS417_17215 -0.6 -2.3 peptidylprolyl isomerase compare
PS417_00295 -0.6 -3.6 hypothetical protein compare
PS417_20825 -0.6 -1.2 drug:proton antiporter compare
PS417_19055 -0.6 -3.2 ArsR family transcriptional regulator compare
PS417_19135 -0.6 -1.1 DeoR faimly transcriptional regulator compare
PS417_19705 -0.6 -1.4 flagellar biosynthesis regulator FlhF compare
PS417_19075 -0.6 -3.5 ABC transporter ATP-binding protein compare
PS417_14425 -0.6 -1.4 alkylhydroperoxidase compare
PS417_27520 -0.6 -1.7 uroporphyrin-III methyltransferase compare
PS417_02800 -0.6 -1.5 acetyltransferase compare
PS417_05815 -0.6 -3.0 recombinase RecA compare
PS417_03100 -0.6 -0.9 pilus assembly protein compare


Specific Phenotypes

For 10 genes in this experiment

For carbon source D-Mannose in Pseudomonas simiae WCS417

For carbon source D-Mannose across organisms