Experiment set3IT019 for Pseudomonas simiae WCS417

Compare to:

Cytidine carbon source

200 most important genes:

  gene name fitness t score description  
PS417_26740 -7.9 -7.7 homoserine acetyltransferase compare
PS417_18585 -7.4 -5.1 3-isopropylmalate dehydrogenase compare
PS417_01575 -7.4 -4.6 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PS417_23805 -6.9 -6.8 acetolactate synthase 3 regulatory subunit compare
PS417_04415 -6.8 -8.1 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PS417_01855 -6.4 -5.6 phosphoribosyl-AMP cyclohydrolase compare
PS417_27040 -6.3 -3.4 3-phosphoglycerate dehydrogenase compare
PS417_23800 -6.1 -13.0 ketol-acid reductoisomerase compare
PS417_04420 -5.9 -13.2 histidinol dehydrogenase compare
PS417_25720 -5.9 -11.9 anthranilate synthase component II compare
PS417_25725 -5.8 -16.6 anthranilate synthase component I compare
PS417_18530 -5.8 -6.5 O-succinylhomoserine sulfhydrylase compare
PS417_24745 -5.6 -5.5 gamma-glutamyl phosphate reductase compare
PS417_23810 -5.6 -11.8 acetolactate synthase 3 catalytic subunit compare
PS417_00185 -5.4 -6.4 tryptophan synthase subunit beta compare
PS417_02510 -5.4 -7.4 ATP phosphoribosyltransferase regulatory subunit compare
PS417_18560 -5.4 -8.8 N-(5'-phosphoribosyl)anthranilate isomerase compare
PS417_18595 -5.2 -5.1 3-isopropylmalate dehydratase compare
PS417_26745 -5.0 -6.7 methionine biosynthesis protein MetW compare
PS417_01850 -4.9 -9.9 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PS417_22690 -4.9 -7.5 phosphogluconate dehydratase compare
PS417_16465 -4.9 -10.2 sirohydrochlorin ferrochelatase compare
PS417_18400 -4.8 -4.5 D-ribose ABC transporter, ATPase component RbsA (from data) compare
PS417_01565 -4.7 -3.3 imidazole glycerol phosphate synthase compare
PS417_12855 -4.5 -8.0 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_00180 -4.4 -4.8 tryptophan synthase subunit alpha compare
PS417_27195 -4.2 -2.2 N-acetylglutamate synthase compare
PS417_25710 -4.2 -2.3 indole-3-glycerol-phosphate synthase compare
PS417_18600 -4.2 -3.2 isopropylmalate isomerase compare
PS417_01580 -4.1 -2.0 imidazole glycerol phosphate synthase compare
PS417_05595 -4.1 -8.8 ornithine carbamoyltransferase compare
PS417_18395 -3.9 -4.3 D-ribose ABC transporter, permease component RbsC (from data) compare
PS417_01605 -3.8 -3.7 phosphoglycerate mutase compare
PS417_02005 -3.8 -13.6 glutamate synthase compare
PS417_12290 -3.8 -7.2 sulfite reductase compare
PS417_25715 -3.8 -5.1 anthranilate phosphoribosyltransferase compare
PS417_26730 -3.7 -2.0 pyrroline-5-carboxylate reductase compare
PS417_02415 -3.7 -5.7 phosphoserine phosphatase compare
PS417_23995 -3.6 -1.9 preprotein translocase subunit SecG compare
PS417_23545 -3.5 -3.6 gamma-glutamyl kinase compare
PS417_23110 -3.5 -6.1 2-isopropylmalate synthase compare
PS417_26890 -3.2 -5.8 dihydroxy-acid dehydratase compare
PS417_27835 -3.1 -8.1 endoribonuclease compare
PS417_21035 -3.1 -7.8 multidrug transporter compare
PS417_22385 -3.1 -13.9 quinolinate synthase A compare
PS417_02000 -2.8 -15.0 glutamate synthase compare
PS417_28220 -2.8 -5.2 LysR family transcriptional regulator compare
PS417_20125 -2.7 -5.1 phosphoribosylglycinamide formyltransferase compare
PS417_24155 -2.7 -4.4 ATP-binding protein compare
PS417_03925 -2.6 -7.9 nicotinate-nucleotide pyrophosphorylase compare
PS417_26995 -2.5 -9.9 phosphoserine phosphatase compare
PS417_20160 -2.4 -3.9 cysteine synthase compare
PS417_20985 -2.2 -3.9 porin compare
PS417_18390 -2.2 -5.4 LacI family transcriptional regulator compare
PS417_09725 -2.2 -10.4 transporter compare
PS417_26985 -2.0 -6.2 phosphoenolpyruvate-protein phosphotransferase compare
PS417_01710 -1.9 -6.5 histidine utilization repressor compare
PS417_08125 -1.9 -2.1 prephenate dehydratase compare
PS417_22570 -1.8 -1.9 H-NS histone compare
PS417_01560 -1.8 -2.1 imidazoleglycerol-phosphate dehydratase compare
PS417_08220 -1.7 -1.5 epimerase compare
PS417_23775 -1.7 -2.1 exodeoxyribonuclease V subunit beta compare
PS417_23770 -1.6 -3.0 exodeoxyribonuclease V subunit alpha compare
PS417_14940 -1.5 -3.1 LysR family transcriptional regulator compare
PS417_27875 -1.5 -8.8 histidine kinase compare
PS417_22520 -1.5 -3.1 histidine kinase compare
PS417_06375 -1.4 -1.5 deoxycytidine triphosphate deaminase compare
PS417_05570 -1.4 -6.1 DeoR faimly transcriptional regulator compare
PS417_06200 -1.4 -5.6 protein-PII uridylyltransferase compare
PS417_09210 -1.4 -2.3 TetR family transcriptional regulator compare
PS417_16510 -1.3 -4.7 Clp protease ClpX compare
PS417_08205 -1.3 -3.6 acetyltransferase compare
PS417_02980 -1.3 -1.9 chemotaxis protein compare
PS417_08200 -1.3 -3.5 hypothetical protein compare
PS417_04270 -1.3 -8.2 ribonuclease G compare
PS417_10995 -1.3 -2.5 GntR family transcriptional regulator compare
PS417_06205 -1.3 -8.1 methionine aminopeptidase compare
PS417_26040 -1.3 -3.0 malate synthase compare
PS417_04595 -1.3 -3.7 cell division protein MraZ compare
PS417_24835 -1.2 -4.7 hypothetical protein compare
PS417_17495 -1.2 -4.2 multidrug ABC transporter permease compare
PS417_17505 -1.2 -2.3 LuxR family transcriptional regulator compare
PS417_27290 -1.1 -2.3 hypothetical protein compare
PS417_21750 -1.1 -9.3 acetyl-CoA synthetase compare
PS417_21125 -1.1 -5.3 phosphoadenosine phosphosulfate reductase compare
PS417_17485 -1.1 -4.7 membrane protein compare
PS417_17980 -1.1 -2.5 ABC transporter permease compare
PS417_15465 -1.1 -2.4 carboxynorspermidine decarboxylase compare
PS417_02805 -1.0 -2.2 urease subunit gamma compare
PS417_17455 -1.0 -2.5 cytochrome C compare
PS417_07115 -1.0 -7.5 L-aspartate oxidase compare
PS417_07170 -1.0 -3.3 hypothetical protein compare
PS417_04410 -1.0 -1.2 hypothetical protein compare
PS417_08230 -1.0 -1.3 lipopolysaccharide biosynthesis protein RfbH compare
PS417_08195 -1.0 -5.4 hypothetical protein compare
PS417_17480 -1.0 -3.7 branched-chain amino acid ABC transporter substrate-binding protein compare
PS417_17415 -1.0 -5.3 histidine kinase compare
PS417_06685 -1.0 -1.3 beta-ketoadipyl CoA thiolase compare
PS417_04180 -1.0 -3.6 GntR family transcriptional regulator compare
PS417_28510 -1.0 -4.6 chromosome partitioning protein compare
PS417_21510 -1.0 -1.6 histidine kinase compare
PS417_26295 -1.0 -2.6 gamma-butyrobetaine dioxygenase compare
PS417_27010 -0.9 -6.6 threonine dehydratase compare
PS417_08225 -0.9 -4.7 acetolactate synthase compare
PS417_01570 -0.9 -0.9 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase compare
PS417_26990 -0.9 -1.4 RNA pyrophosphohydrolase compare
PS417_16255 -0.9 -2.0 RNA polymerase sigma factor compare
PS417_25940 -0.9 -5.9 pyrroloquinoline quinone biosynthesis protein PqqE compare
PS417_11845 -0.9 -4.3 RpiR family transcriptional regulator compare
PS417_20665 -0.9 -4.5 hypothetical protein compare
PS417_23900 -0.9 -5.3 poly(A) polymerase compare
PS417_27305 -0.9 -4.9 5-formyltetrahydrofolate cyclo-ligase compare
PS417_22060 -0.9 -1.0 hypothetical protein compare
PS417_26900 -0.9 -2.1 L-cystine transporter tcyP compare
PS417_27870 -0.9 -2.2 ATP-dependent DNA helicase RecG compare
PS417_27435 -0.9 -4.4 polyphosphate kinase compare
PS417_25920 -0.9 -5.8 pyrroloquinoline quinone biosynthesis protein PqqF compare
PS417_16490 -0.9 -1.9 cell division protein FtsK compare
PS417_15090 -0.9 -2.2 hypothetical protein compare
PS417_02560 -0.9 -1.6 23S rRNA methyltransferase compare
PS417_25380 -0.8 -2.5 hypothetical protein compare
PS417_17565 -0.8 -1.5 branched-chain amino acid aminotransferase compare
PS417_00370 -0.8 -1.2 hypothetical protein compare
PS417_15780 -0.8 -3.4 membrane protein compare
PS417_08545 -0.8 -2.1 aromatic ring-opening dioxygenase LigB compare
PS417_05815 -0.8 -2.9 recombinase RecA compare
PS417_22840 -0.8 -1.7 tRNA-Met compare
PS417_12075 -0.8 -4.7 DNA-binding protein compare
PS417_00085 -0.8 -2.5 16S rRNA methyltransferase compare
PS417_25930 -0.8 -4.0 pyrroloquinoline quinone biosynthesis protein PqqC compare
PS417_05840 -0.8 -2.7 LuxR family transcriptional regulator compare
PS417_01510 -0.8 -2.2 hypothetical protein compare
PS417_08380 -0.8 -3.9 ABC transporter ATP-binding protein compare
PS417_07945 -0.8 -2.2 hypothetical protein compare
PS417_17435 -0.8 -4.8 dehydrogenase compare
PS417_03245 -0.8 -5.3 omega amino acid--pyruvate aminotransferase compare
PS417_21090 -0.8 -1.3 hypothetical protein compare
PS417_08580 -0.8 -3.6 histidine kinase compare
PS417_04185 -0.7 -2.6 hypothetical protein compare
PS417_15200 -0.7 -2.9 protein activator of alkane oxidation PraB compare
PS417_10010 -0.7 -1.9 Replication protein P compare
PS417_08150 -0.7 -2.8 hypothetical protein compare
PS417_27035 -0.7 -3.3 FAD-linked oxidase compare
PS417_14455 -0.7 -1.4 polyketide cyclase compare
PS417_08730 -0.7 -1.9 cytochrome C compare
PS417_22450 -0.7 -1.0 ATP-dependent DNA helicase RuvA compare
PS417_08990 -0.7 -2.8 ABC transporter substrate-binding protein compare
PS417_14075 -0.7 -1.7 hypothetical protein compare
PS417_17425 -0.7 -2.5 hypothetical protein compare
PS417_22445 -0.7 -1.9 ATP-dependent DNA helicase RuvB compare
PS417_22695 -0.7 -4.9 glyceraldehyde-3-phosphate dehydrogenase compare
PS417_21705 -0.7 -3.1 arginine N-succinyltransferase compare
PS417_00485 -0.7 -2.6 ABC transporter permease compare
PS417_06500 -0.7 -1.1 hypothetical protein compare
PS417_06700 -0.7 -2.0 3-oxoadipate CoA-transferase subunit A (EC 2.8.3.6) (from data) compare
PS417_15540 -0.7 -1.3 NUDIX hydrolase compare
PS417_18780 -0.7 -1.5 flavin reductase compare
PS417_24675 -0.7 -1.3 lipoyl synthase compare
PS417_20610 -0.7 -1.2 hypothetical protein compare
PS417_18420 -0.7 -1.7 deoxyribonuclease compare
PS417_16570 -0.7 -4.3 isocitrate lyase compare
PS417_00295 -0.7 -3.5 hypothetical protein compare
PS417_09695 -0.7 -1.7 hydrolase compare
PS417_21655 -0.7 -1.2 aspartate kinase compare
PS417_27135 -0.6 -0.8 glutamine synthetase compare
PS417_22210 -0.6 -1.7 AraC family transcriptional regulator compare
PS417_28070 -0.6 -3.1 phosphate ABC transporter ATP-binding protein compare
PS417_19335 -0.6 -1.5 isochorismatase compare
PS417_28080 -0.6 -4.7 phosphate ABC transporter permease compare
PS417_17420 -0.6 -2.7 ethanol oxidation regulatory protein ercA (from data) compare
PS417_01145 -0.6 -0.9 taurine transporter ATP-binding subunit compare
PS417_26145 -0.6 -2.3 hypothetical protein compare
PS417_04685 -0.6 -3.2 histidine kinase compare
PS417_27610 -0.6 -1.7 hypothetical protein compare
PS417_03915 -0.6 -2.0 tRNA-Thr compare
PS417_09705 -0.6 -2.6 hypothetical protein compare
PS417_27595 -0.6 -1.7 recombinase XerC compare
PS417_01885 -0.6 -2.5 poly(3-hydroxyalkanoate) granule-associated protein PhaF compare
PS417_11405 -0.6 -3.1 precorrin 6A synthase compare
PS417_24100 -0.6 -3.6 transcriptional regulator PdhR compare
PS417_08135 -0.6 -3.7 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_21015 -0.6 -1.6 EstX protein compare
PS417_13510 -0.6 -1.0 polyketide cyclase compare
PS417_09245 -0.6 -1.3 recombinase RdgC compare
PS417_18435 -0.6 -1.6 hypothetical protein compare
PS417_22715 -0.6 -1.4 heme oxygenase compare
PS417_00945 -0.6 -1.7 sulfate ABC transporter ATP-binding protein compare
PS417_08130 -0.6 -1.3 aspartate aminotransferase compare
PS417_12310 -0.6 -3.9 methionine synthase compare
PS417_12595 -0.6 -1.5 transcriptional regulator compare
PS417_24460 -0.6 -1.1 hypothetical protein compare
PS417_05065 -0.6 -1.8 hypothetical protein compare
PS417_07240 -0.6 -2.5 Transcriptional regulator of deoxyribose catabolism (from data) compare
PS417_03240 -0.6 -2.6 LysR family transcriptional regulator compare
PS417_13345 -0.6 -2.3 MFS transporter permease compare
PS417_11380 -0.6 -1.9 peptidylprolyl isomerase compare
PS417_08045 -0.6 -1.6 uracil permease compare
PS417_00275 -0.6 -2.7 hypothetical protein compare
PS417_05235 -0.6 -1.0 peptidase inhibitor I42 compare
PS417_28185 -0.6 -1.4 homocysteine methyltransferase compare


Specific Phenotypes

None in this experiment

For Pseudomonas simiae WCS417 in carbon source experiments

For carbon source Cytidine across organisms