Experiment set3IT019 for Pontibacter actiniarum KMM 6156, DSM 19842

Compare to:

marine broth with Tetracycline hydrochloride 0.006 mg/ml

200 most detrimental genes:

  gene name fitness t score description  
CA264_01820 +5.4 18.4 hypothetical protein compare
CA264_03635 +4.7 16.3 DoxX family protein compare
CA264_07665 +4.4 28.4 sulfurtransferase compare
CA264_07660 +4.2 27.9 hypothetical protein compare
CA264_03640 +4.0 10.2 TetR family transcriptional regulator compare
CA264_07185 +3.4 6.4 TetR family transcriptional regulator compare
CA264_01815 +3.3 4.5 N-acetyltransferase compare
CA264_05400 +3.0 22.3 MarR family transcriptional regulator compare
CA264_07670 +2.9 21.3 hypothetical protein compare
CA264_01810 +2.4 5.6 hypothetical protein compare
CA264_06345 +2.3 20.0 hypothetical protein compare
CA264_01800 +2.3 10.7 gluconate kinase compare
CA264_03630 +2.2 12.0 PAS domain-containing sensor histidine kinase compare
CA264_01805 +2.1 2.7 6-phosphogluconate dehydrogenase (decarboxylating) compare
CA264_13495 +2.1 10.4 aldehyde dehydrogenase compare
CA264_04495 +1.9 9.6 histidine kinase compare
CA264_01790 +1.9 8.7 hypothetical protein compare
CA264_03625 +1.8 11.0 proline iminopeptidase compare
CA264_13015 +1.7 12.3 sensor histidine kinase compare
CA264_00015 +1.7 11.7 hypothetical protein compare
CA264_19005 +1.5 12.8 SusC/RagA family TonB-linked outer membrane protein compare
CA264_03870 +1.5 8.8 transcription elongation factor GreA compare
CA264_18250 +1.5 5.3 NADH-quinone oxidoreductase subunit B compare
CA264_16330 +1.5 6.9 hypothetical protein compare
CA264_07190 +1.3 3.7 hypothetical protein compare
CA264_13500 +1.3 5.9 hypothetical protein compare
CA264_01795 +1.2 5.2 hypothetical protein compare
CA264_03810 +1.2 4.7 hypothetical protein compare
CA264_04605 +1.2 9.8 hypothetical protein compare
CA264_08105 +1.2 7.1 NupC/NupG family nucleoside CNT transporter compare
CA264_01865 +1.2 2.6 polyisoprenoid-binding protein compare
CA264_13030 +1.2 5.2 cysteine methyltransferase compare
CA264_01735 +1.1 4.7 oxidoreductase compare
CA264_19925 +1.1 5.7 peptidyl-prolyl cis-trans isomerase compare
CA264_01705 +1.1 8.3 NADH-quinone oxidoreductase subunit H compare
CA264_18290 +1.1 8.2 NADH dehydrogenase subunit D compare
CA264_13100 +1.0 2.8 3-phosphoshikimate 1-carboxyvinyltransferase compare
CA264_01740 +1.0 4.7 proton-translocating NADH-quinone oxidoreductase subunit N compare
CA264_01730 +1.0 8.6 NADH-quinone oxidoreductase subunit L compare
CA264_01715 +1.0 5.9 4Fe-4S ferredoxin compare
CA264_18245 +1.0 4.9 NADH-quinone oxidoreductase subunit A compare
CA264_18260 +1.0 6.3 NADH-quinone oxidoreductase subunit C compare
CA264_15850 +1.0 4.4 IclR family transcriptional regulator compare
CA264_15160 +1.0 4.1 nucleoside triphosphate pyrophosphohydrolase compare
CA264_01780 +1.0 4.6 hypothetical protein compare
CA264_13510 +1.0 6.3 hypothetical protein compare
CA264_17780 +0.9 4.2 hypothetical protein compare
CA264_01785 +0.9 2.6 hypothetical protein compare
CA264_17785 +0.9 4.6 preprotein translocase subunit YajC compare
CA264_00295 +0.9 3.8 hypothetical protein compare
CA264_16595 +0.9 5.8 hypothetical protein compare
CA264_16590 +0.9 2.7 site-2 protease family protein compare
CA264_00565 +0.9 1.8 hypothetical protein compare
CA264_11295 +0.9 6.4 hypothetical protein compare
CA264_09230 +0.9 3.3 hydroxymethylglutaryl-CoA lyase compare
CA264_06845 +0.9 2.6 hypothetical protein compare
CA264_01725 +0.8 3.1 NADH-quinone oxidoreductase subunit K compare
CA264_15115 +0.8 1.2 hypothetical protein compare
CA264_13505 +0.8 2.8 hypothetical protein compare
CA264_00725 +0.8 3.7 pyruvate kinase compare
CA264_10600 +0.8 2.5 hypothetical protein compare
CA264_21460 +0.8 2.4 hypothetical protein compare
CA264_15875 +0.7 6.4 bacillithiol biosynthesis cysteine-adding enzyme BshC compare
CA264_11970 +0.7 2.4 hypothetical protein compare
CA264_08550 +0.7 2.9 hypothetical protein compare
CA264_11975 +0.7 4.2 hypothetical protein compare
CA264_20980 +0.7 3.2 conjugal transfer protein compare
CA264_15950 +0.7 3.4 hypothetical protein compare
CA264_00085 +0.7 2.1 hypothetical protein compare
CA264_06445 +0.7 1.9 NUDIX hydrolase compare
CA264_01720 +0.7 3.9 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 compare
CA264_15150 +0.7 2.3 hypothetical protein compare
CA264_15880 +0.7 1.6 5-formyltetrahydrofolate cyclo-ligase compare
CA264_20120 +0.7 1.8 hypothetical protein compare
CA264_13470 +0.7 0.9 cysteine synthase A compare
CA264_15820 +0.7 6.0 transcription-repair coupling factor compare
CA264_10520 +0.7 1.3 molybdopterin synthase sulfur carrier subunit compare
CA264_19010 +0.7 5.4 SusD/RagB family nutrient-binding outer membrane lipoprotein compare
CA264_05645 +0.7 3.4 L-serine dehydratase, iron-sulfur-dependent subunit beta compare
CA264_19450 +0.7 3.1 type I methionyl aminopeptidase compare
CA264_18055 +0.7 4.9 hypothetical protein compare
CA264_16600 +0.6 4.5 alpha/beta hydrolase compare
CA264_09740 +0.6 1.3 hypothetical protein compare
CA264_18060 +0.6 4.2 hypothetical protein compare
CA264_14115 +0.6 3.0 hydrolase compare
CA264_11280 +0.6 2.2 SCO family protein compare
CA264_12340 +0.6 2.5 acetyltransferase compare
CA264_04670 +0.6 2.3 hypothetical protein compare
CA264_16385 +0.6 4.7 DUF4271 domain-containing protein compare
CA264_11805 +0.6 4.3 thioesterase compare
CA264_11800 +0.6 4.2 aerotolerance protein compare
CA264_10585 +0.6 2.3 hypothetical protein compare
CA264_17320 +0.6 5.4 hypothetical protein compare
CA264_02180 +0.6 1.1 response regulator compare
CA264_05650 +0.6 4.5 tryptophan 2,3-dioxygenase compare
CA264_08615 +0.6 1.8 hypothetical protein compare
CA264_11890 +0.6 1.6 NADH oxidase compare
CA264_09225 +0.6 3.6 Fe-S oxidoreductase compare
CA264_00170 +0.6 2.0 ATP:cob(I)alamin adenosyltransferase compare
CA264_09235 +0.6 4.5 short-chain dehydrogenase compare
CA264_00945 +0.6 2.8 acyl-CoA reductase compare
CA264_04900 +0.6 3.0 bacillithiol biosynthesis deacetylase BshB1 compare
CA264_07270 +0.6 3.0 hypothetical protein compare
CA264_00660 +0.6 4.1 hypothetical protein compare
CA264_09240 +0.6 4.1 aldehyde dehydrogenase compare
CA264_13800 +0.6 0.7 hypothetical protein compare
CA264_02220 +0.6 4.7 signal peptide peptidase SppA compare
CA264_04340 +0.6 5.0 hypothetical protein compare
CA264_12755 +0.6 2.5 SAM-dependent methyltransferase compare
CA264_12155 +0.6 1.2 histidine phosphatase family protein compare
CA264_04125 +0.6 1.9 hypothetical protein compare
CA264_08140 +0.5 2.4 oxidoreductase compare
CA264_17565 +0.5 1.1 hypothetical protein compare
CA264_15690 +0.5 3.3 hypothetical protein compare
CA264_06275 +0.5 3.4 chloride channel protein compare
CA264_14585 +0.5 3.4 YicC family protein compare
CA264_21545 +0.5 1.9 AraC family transcriptional regulator compare
CA264_07045 +0.5 3.1 TetR family transcriptional regulator compare
CA264_04895 +0.5 3.5 peptidase M23 compare
CA264_14125 +0.5 2.2 endonuclease V compare
CA264_13115 +0.5 3.8 proline dehydrogenase compare
CA264_15845 +0.5 1.9 hypothetical protein compare
CA264_17020 +0.5 2.5 methyltransferase type 11 compare
CA264_13825 +0.5 1.2 hypothetical protein compare
CA264_04520 +0.5 3.4 DNA mismatch repair protein MutS compare
CA264_08715 +0.5 3.7 glucosamine-6-phosphate deaminase compare
CA264_00730 +0.5 1.9 hypothetical protein compare
CA264_11300 +0.5 3.7 mechanosensitive ion channel protein MscS compare
CA264_07675 +0.5 2.7 MATE family efflux transporter compare
CA264_19150 +0.5 3.5 TonB dependent receptor compare
CA264_17800 +0.5 1.5 tRNA-Val compare
CA264_04415 +0.5 1.0 hypothetical protein compare
CA264_01385 +0.5 3.5 iron ABC transporter substrate-binding protein compare
CA264_03600 +0.5 3.3 ATP-dependent helicase HrpB compare
CA264_07800 +0.5 2.8 hypothetical protein compare
CA264_11995 +0.5 1.6 hypothetical protein compare
CA264_09125 +0.5 3.4 glucose/galactose MFS transporter compare
CA264_10310 +0.5 2.2 hypothetical protein compare
CA264_20570 +0.5 1.3 inorganic pyrophosphatase compare
CA264_20490 +0.5 1.2 hypothetical protein compare
CA264_00235 +0.5 1.8 hypothetical protein compare
CA264_03620 +0.5 3.3 acyl-CoA desaturase compare
CA264_12215 +0.5 1.7 cupin compare
CA264_17915 +0.5 1.7 LPS biosynthesis protein WbpP compare
CA264_14160 +0.5 1.4 HupE / UreJ protein compare
CA264_18495 +0.5 2.7 four helix bundle protein compare
CA264_15765 +0.5 1.8 T9SS C-terminal target domain-containing protein compare
CA264_14590 +0.5 2.8 phosphoribosylformylglycinamidine synthase I compare
CA264_02720 +0.5 3.3 peroxiredoxin compare
CA264_20060 +0.5 0.9 ribosome silencing factor RsfS compare
CA264_10920 +0.5 3.1 helix-turn-helix-type transcriptional regulator compare
CA264_12790 +0.5 2.2 hypothetical protein compare
CA264_02415 +0.5 1.3 dethiobiotin synthase compare
CA264_13340 +0.4 1.3 iron-sulfur cluster assembly accessory protein compare
CA264_09730 +0.4 1.6 hypothetical protein compare
CA264_06925 +0.4 1.2 acetolactate synthase small subunit compare
CA264_14105 +0.4 3.2 T9SS C-terminal target domain-containing protein compare
CA264_09005 +0.4 1.7 hypothetical protein compare
CA264_16605 +0.4 3.6 hypothetical protein compare
CA264_13480 +0.4 1.7 hypothetical protein compare
CA264_18005 +0.4 2.1 3-hydroxyanthranilate 3,4-dioxygenase compare
CA264_18000 +0.4 3.0 short-chain dehydrogenase compare
CA264_18090 +0.4 2.3 DUF305 domain-containing protein compare
CA264_20115 +0.4 2.8 phosphoribosylamine--glycine ligase compare
CA264_05970 +0.4 2.5 hypothetical protein compare
CA264_09140 +0.4 2.4 chloramphenicol acetyltransferase compare
CA264_11425 +0.4 2.4 hydroxyacid dehydrogenase compare
CA264_21630 +0.4 1.9 hypothetical protein compare
CA264_17030 +0.4 3.3 hypothetical protein compare
CA264_10955 +0.4 0.7 phenylacetate-CoA oxygenase subunit PaaJ compare
CA264_07720 +0.4 2.9 gamma-glutamyl-phosphate reductase compare
CA264_12750 +0.4 2.6 hypothetical protein compare
CA264_07050 +0.4 2.6 serine acetyltransferase compare
CA264_18765 +0.4 3.5 ATPase compare
CA264_06460 +0.4 1.6 NUDIX domain-containing protein compare
CA264_03715 +0.4 1.8 DUF983 domain-containing protein compare
CA264_02630 +0.4 1.2 carbonic anhydrase compare
CA264_12310 +0.4 0.5 NifU family protein compare
CA264_16035 +0.4 1.9 hypothetical protein compare
CA264_20830 +0.4 1.8 hypothetical protein compare
CA264_18040 +0.4 3.0 kynurenine 3-monooxygenase compare
CA264_06160 +0.4 1.2 hypothetical protein compare
CA264_00540 +0.4 2.6 translational GTPase TypA compare
CA264_02500 +0.4 1.5 hypothetical protein compare
CA264_15785 +0.4 0.9 hypothetical protein compare
CA264_09380 +0.4 2.1 hypothetical protein compare
CA264_07695 +0.4 2.4 thioesterase compare
CA264_07280 +0.4 2.8 hypothetical protein compare
CA264_13170 +0.4 1.8 hypothetical protein compare
CA264_09800 +0.4 2.5 DNA-binding response regulator compare
CA264_05335 +0.4 2.3 Nif3-like dinuclear metal center hexameric protein compare
CA264_13555 +0.4 1.9 hypothetical protein compare
CA264_13690 +0.4 2.6 SAM-dependent methyltransferase compare
CA264_00570 +0.4 1.7 methionine--tRNA ligase compare
CA264_20875 +0.4 2.0 resolvase compare
CA264_00040 +0.4 3.1 hypothetical protein compare
CA264_01880 +0.4 2.5 DUF4440 domain-containing protein compare
CA264_18195 +0.4 1.3 chaperonin compare
CA264_11665 +0.4 1.5 DDE transposase compare
CA264_20070 +0.4 2.2 hypothetical protein compare


Specific Phenotypes

For 2 genes in this experiment

For stress Tetracycline hydrochloride in Pontibacter actiniarum KMM 6156, DSM 19842

For stress Tetracycline hydrochloride across organisms