Experiment set3IT018 for Pontibacter actiniarum KMM 6156, DSM 19842

Compare to:

marine broth with Tetracycline hydrochloride 0.003 mg/ml

200 most detrimental genes:

  gene name fitness t score description  
CA264_01820 +3.7 17.5 hypothetical protein compare
CA264_07665 +3.5 23.1 sulfurtransferase compare
CA264_03635 +3.4 12.4 DoxX family protein compare
CA264_07660 +3.4 22.4 hypothetical protein compare
CA264_01815 +2.9 5.6 N-acetyltransferase compare
CA264_07185 +2.8 8.5 TetR family transcriptional regulator compare
CA264_03640 +2.6 5.3 TetR family transcriptional regulator compare
CA264_05400 +2.5 17.8 MarR family transcriptional regulator compare
CA264_07670 +2.5 20.1 hypothetical protein compare
CA264_06345 +2.1 19.1 hypothetical protein compare
CA264_13495 +1.9 10.5 aldehyde dehydrogenase compare
CA264_01810 +1.9 4.7 hypothetical protein compare
CA264_01800 +1.9 10.4 gluconate kinase compare
CA264_01805 +1.7 3.0 6-phosphogluconate dehydrogenase (decarboxylating) compare
CA264_03630 +1.7 11.2 PAS domain-containing sensor histidine kinase compare
CA264_04495 +1.7 10.3 histidine kinase compare
CA264_19925 +1.7 11.0 peptidyl-prolyl cis-trans isomerase compare
CA264_00015 +1.7 11.7 hypothetical protein compare
CA264_13015 +1.6 10.7 sensor histidine kinase compare
CA264_19005 +1.5 12.8 SusC/RagA family TonB-linked outer membrane protein compare
CA264_03625 +1.4 9.0 proline iminopeptidase compare
CA264_16330 +1.4 8.0 hypothetical protein compare
CA264_01790 +1.4 4.5 hypothetical protein compare
CA264_13470 +1.4 2.8 cysteine synthase A compare
CA264_15850 +1.3 6.0 IclR family transcriptional regulator compare
CA264_16150 +1.2 3.0 acyl carrier protein compare
CA264_07190 +1.2 3.6 hypothetical protein compare
CA264_01795 +1.2 6.8 hypothetical protein compare
CA264_13500 +1.1 5.8 hypothetical protein compare
CA264_00295 +1.1 4.9 hypothetical protein compare
CA264_11295 +1.0 7.8 hypothetical protein compare
CA264_17780 +1.0 5.5 hypothetical protein compare
CA264_07730 +1.0 5.9 pyrroline-5-carboxylate reductase compare
CA264_18775 +1.0 2.3 hypothetical protein compare
CA264_13505 +1.0 3.4 hypothetical protein compare
CA264_08710 +0.9 5.6 sugar kinase compare
CA264_00945 +0.9 4.0 acyl-CoA reductase compare
CA264_11655 +0.9 1.8 hypothetical protein compare
CA264_18060 +0.9 5.8 hypothetical protein compare
CA264_18005 +0.9 4.2 3-hydroxyanthranilate 3,4-dioxygenase compare
CA264_17915 +0.9 3.3 LPS biosynthesis protein WbpP compare
CA264_15150 +0.9 3.1 hypothetical protein compare
CA264_13100 +0.9 2.3 3-phosphoshikimate 1-carboxyvinyltransferase compare
CA264_09375 +0.9 2.3 transcriptional regulator compare
CA264_16385 +0.9 6.4 DUF4271 domain-containing protein compare
CA264_01785 +0.9 2.6 hypothetical protein compare
CA264_13240 +0.9 3.5 hypothetical protein compare
CA264_05650 +0.8 5.3 tryptophan 2,3-dioxygenase compare
CA264_07720 +0.8 6.4 gamma-glutamyl-phosphate reductase compare
CA264_01715 +0.8 3.3 4Fe-4S ferredoxin compare
CA264_18260 +0.8 5.8 NADH-quinone oxidoreductase subunit C compare
CA264_18055 +0.8 6.3 hypothetical protein compare
CA264_14105 +0.8 6.6 T9SS C-terminal target domain-containing protein compare
CA264_05645 +0.8 3.9 L-serine dehydratase, iron-sulfur-dependent subunit beta compare
CA264_03810 +0.8 2.7 hypothetical protein compare
CA264_04605 +0.8 6.1 hypothetical protein compare
CA264_13510 +0.8 5.3 hypothetical protein compare
CA264_14110 +0.8 3.1 phosphoribosyltransferase compare
CA264_03870 +0.8 2.0 transcription elongation factor GreA compare
CA264_18250 +0.8 2.4 NADH-quinone oxidoreductase subunit B compare
CA264_08715 +0.8 6.3 glucosamine-6-phosphate deaminase compare
CA264_12310 +0.8 1.4 NifU family protein compare
CA264_21285 +0.8 2.0 hypothetical protein compare
CA264_01725 +0.8 3.6 NADH-quinone oxidoreductase subunit K compare
CA264_02220 +0.8 6.5 signal peptide peptidase SppA compare
CA264_14585 +0.8 5.2 YicC family protein compare
CA264_14115 +0.8 3.6 hydrolase compare
CA264_11800 +0.8 6.6 aerotolerance protein compare
CA264_11975 +0.8 4.6 hypothetical protein compare
CA264_17320 +0.8 6.8 hypothetical protein compare
CA264_07725 +0.8 6.0 glutamate 5-kinase compare
CA264_15950 +0.8 2.5 hypothetical protein compare
CA264_13030 +0.8 3.1 cysteine methyltransferase compare
CA264_12910 +0.7 1.9 acyl-CoA-binding protein compare
CA264_21545 +0.7 3.8 AraC family transcriptional regulator compare
CA264_06845 +0.7 2.3 hypothetical protein compare
CA264_18290 +0.7 5.1 NADH dehydrogenase subunit D compare
CA264_15160 +0.7 4.0 nucleoside triphosphate pyrophosphohydrolase compare
CA264_11300 +0.7 5.8 mechanosensitive ion channel protein MscS compare
CA264_04340 +0.7 6.1 hypothetical protein compare
CA264_12755 +0.7 4.3 SAM-dependent methyltransferase compare
CA264_07850 +0.7 2.8 hypothetical protein compare
CA264_04895 +0.7 5.3 peptidase M23 compare
CA264_02150 +0.7 4.3 hypothetical protein compare
CA264_01720 +0.7 4.9 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 compare
CA264_02740 +0.7 4.7 hypothetical protein compare
CA264_12350 +0.7 5.2 glycosyltransferase family 1 protein compare
CA264_13115 +0.7 5.5 proline dehydrogenase compare
CA264_14125 +0.7 4.6 endonuclease V compare
CA264_11805 +0.7 5.0 thioesterase compare
CA264_20595 +0.7 4.2 acyl-CoA desaturase compare
CA264_01730 +0.7 5.4 NADH-quinone oxidoreductase subunit L compare
CA264_14120 +0.7 3.7 hypothetical protein compare
CA264_02080 +0.7 1.0 hypothetical protein compare
CA264_04600 +0.7 6.0 hypothetical protein compare
CA264_00725 +0.7 3.9 pyruvate kinase compare
CA264_01735 +0.7 3.7 oxidoreductase compare
CA264_06990 +0.7 5.2 PA-phosphatase compare
CA264_01705 +0.7 4.6 NADH-quinone oxidoreductase subunit H compare
CA264_04800 +0.7 4.2 hypothetical protein compare
CA264_01780 +0.7 4.0 hypothetical protein compare
CA264_15880 +0.7 1.7 5-formyltetrahydrofolate cyclo-ligase compare
CA264_15080 +0.7 2.3 N-acetylmuramic acid 6-phosphate etherase compare
CA264_12335 +0.7 3.9 pyridoxal phosphate-dependent aminotransferase compare
CA264_04795 +0.7 3.5 hypothetical protein compare
CA264_04270 +0.6 2.3 NADH:ubiquinone oxidoreductase subunit A compare
CA264_14455 +0.6 3.2 ribosome maturation factor compare
CA264_08145 +0.6 4.9 deoxyribodipyrimidine photo-lyase compare
CA264_15670 +0.6 1.5 DUF4295 domain-containing protein compare
CA264_18000 +0.6 4.1 short-chain dehydrogenase compare
CA264_14190 +0.6 2.8 hypothetical protein compare
CA264_09240 +0.6 4.6 aldehyde dehydrogenase compare
CA264_08870 +0.6 4.1 imidazolonepropionase compare
CA264_12515 +0.6 3.0 YebC/PmpR family DNA-binding transcriptional regulator compare
CA264_08615 +0.6 2.2 hypothetical protein compare
CA264_02720 +0.6 3.9 peroxiredoxin compare
CA264_19450 +0.6 3.6 type I methionyl aminopeptidase compare
CA264_19860 +0.6 3.1 NifU family protein compare
CA264_00085 +0.6 1.6 hypothetical protein compare
CA264_09265 +0.6 4.5 XRE family transcriptional regulator compare
CA264_14625 +0.6 0.9 phosphoribosylformylglycinamidine synthase subunit PurS compare
CA264_18765 +0.6 4.8 ATPase compare
CA264_02465 +0.6 2.1 hypothetical protein compare
CA264_00660 +0.6 4.0 hypothetical protein compare
CA264_08140 +0.6 3.4 oxidoreductase compare
CA264_16935 +0.6 1.7 hypothetical protein compare
CA264_13080 +0.6 1.4 aminodeoxychorismate lyase compare
CA264_09800 +0.6 4.0 DNA-binding response regulator compare
CA264_08085 +0.6 2.4 short-chain dehydrogenase compare
CA264_19010 +0.6 4.6 SusD/RagB family nutrient-binding outer membrane lipoprotein compare
CA264_01990 +0.6 1.9 tRNA-Lys compare
CA264_00935 +0.6 1.5 hypothetical protein compare
CA264_06070 +0.6 1.4 kinase compare
CA264_15690 +0.6 2.0 hypothetical protein compare
CA264_07045 +0.6 2.9 TetR family transcriptional regulator compare
CA264_18345 +0.6 0.6 hypothetical protein compare
CA264_21400 +0.6 4.9 hypothetical protein compare
CA264_16490 +0.6 4.0 glucose-1-phosphate thymidylyltransferase compare
CA264_08665 +0.6 1.9 N-acetylmuramoyl-L-alanine amidase compare
CA264_19135 +0.5 1.4 hypothetical protein compare
CA264_07020 +0.5 3.6 phosphatidylglycerophosphatase A compare
CA264_12280 +0.5 1.1 hypothetical protein compare
CA264_00040 +0.5 4.1 hypothetical protein compare
CA264_11795 +0.5 3.6 aerotolerance regulator BatB compare
CA264_18040 +0.5 4.2 kynurenine 3-monooxygenase compare
CA264_20070 +0.5 3.1 hypothetical protein compare
CA264_03600 +0.5 4.1 ATP-dependent helicase HrpB compare
CA264_09125 +0.5 3.7 glucose/galactose MFS transporter compare
CA264_13720 +0.5 1.5 hypothetical protein compare
CA264_09230 +0.5 2.4 hydroxymethylglutaryl-CoA lyase compare
CA264_10805 +0.5 1.9 NADPH-dependent oxidoreductase compare
CA264_00090 +0.5 4.4 histidine kinase compare
CA264_17485 +0.5 0.9 cytochrome C biosynthesis protein compare
CA264_08840 +0.5 2.4 DoxX family membrane protein compare
CA264_06140 +0.5 2.8 MerR family transcriptional regulator compare
CA264_02155 +0.5 3.7 peptidase M23 compare
CA264_13775 +0.5 4.0 hypothetical protein compare
CA264_08590 +0.5 2.0 hypothetical protein compare
CA264_17785 +0.5 1.4 preprotein translocase subunit YajC compare
CA264_05010 +0.5 4.0 hypothetical protein compare
CA264_20490 +0.5 1.7 hypothetical protein compare
CA264_03165 +0.5 4.0 acyl-CoA desaturase compare
CA264_09130 +0.5 4.0 hypothetical protein compare
CA264_18015 +0.5 4.1 kynureninase compare
CA264_13515 +0.5 2.4 glyoxalase/bleomycin resistance/dioxygenase family protein compare
CA264_07005 +0.5 3.6 CDP-diacylglycerol--inositol 3-phosphatidyltransferase compare
CA264_13560 +0.5 1.8 membrane protein insertion efficiency factor YidD compare
CA264_09225 +0.5 3.1 Fe-S oxidoreductase compare
CA264_10920 +0.5 3.6 helix-turn-helix-type transcriptional regulator compare
CA264_04575 +0.5 4.3 glycosyltransferase compare
CA264_07675 +0.5 2.9 MATE family efflux transporter compare
CA264_21225 +0.5 0.7 hypothetical protein compare
CA264_15235 +0.5 3.1 hypothetical protein compare
CA264_04710 +0.5 2.1 SAM-dependent methyltransferase compare
CA264_10750 +0.5 2.6 SAM-dependent methyltransferase compare
CA264_04585 +0.5 3.7 hypothetical protein compare
CA264_13790 +0.5 2.0 hypothetical protein compare
CA264_16775 +0.5 2.5 metal-dependent hydrolase compare
CA264_04570 +0.5 3.9 undecaprenyl-phosphate glucose phosphotransferase compare
CA264_07800 +0.5 2.3 hypothetical protein compare
CA264_09305 +0.5 1.6 copper homeostasis protein compare
CA264_04520 +0.5 3.0 DNA mismatch repair protein MutS compare
CA264_07710 +0.5 4.1 SusC/RagA family TonB-linked outer membrane protein compare
CA264_17250 +0.5 1.9 competence protein compare
CA264_05335 +0.5 3.2 Nif3-like dinuclear metal center hexameric protein compare
CA264_12400 +0.5 3.3 hypothetical protein compare
CA264_18495 +0.5 3.3 four helix bundle protein compare
CA264_13525 +0.5 2.9 NAD-dependent dehydratase compare
CA264_00095 +0.5 2.1 response regulator compare
CA264_09235 +0.5 3.0 short-chain dehydrogenase compare
CA264_17265 +0.5 3.4 exodeoxyribonuclease III compare
CA264_11620 +0.5 3.8 hypothetical protein compare
CA264_17965 +0.4 3.5 hypothetical protein compare
CA264_21295 +0.4 1.6 hypothetical protein compare
CA264_14890 +0.4 1.5 triose-phosphate isomerase compare
CA264_15465 +0.4 3.3 glycerol acyltransferase compare
CA264_05080 +0.4 3.1 tryptophan synthase subunit beta compare
CA264_10305 +0.4 0.6 hypothetical protein compare
CA264_12595 +0.4 1.4 5-(carboxyamino)imidazole ribonucleotide mutase compare
CA264_00080 +0.4 3.2 cation acetate symporter compare


Specific Phenotypes

For 2 genes in this experiment

For stress Tetracycline hydrochloride in Pontibacter actiniarum KMM 6156, DSM 19842

For stress Tetracycline hydrochloride across organisms