Experiment set3IT017 for Pseudomonas simiae WCS417

Compare to:

Uridine carbon source

200 most important genes:

  gene name fitness t score description  
PS417_18595 -8.2 -5.7 3-isopropylmalate dehydratase compare
PS417_18600 -8.1 -5.2 isopropylmalate isomerase compare
PS417_01855 -7.6 -4.6 phosphoribosyl-AMP cyclohydrolase compare
PS417_28220 -7.4 -4.8 LysR family transcriptional regulator compare
PS417_04415 -6.9 -9.5 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PS417_18585 -6.8 -6.7 3-isopropylmalate dehydrogenase compare
PS417_00185 -6.5 -4.5 tryptophan synthase subunit beta compare
PS417_02510 -6.5 -9.7 ATP phosphoribosyltransferase regulatory subunit compare
PS417_01575 -6.2 -7.7 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PS417_27040 -6.2 -3.3 3-phosphoglycerate dehydrogenase compare
PS417_23805 -6.1 -7.3 acetolactate synthase 3 regulatory subunit compare
PS417_18560 -6.1 -10.4 N-(5'-phosphoribosyl)anthranilate isomerase compare
PS417_23800 -5.7 -13.7 ketol-acid reductoisomerase compare
PS417_16465 -5.6 -9.7 sirohydrochlorin ferrochelatase compare
PS417_26740 -5.4 -7.0 homoserine acetyltransferase compare
PS417_01565 -5.4 -5.8 imidazole glycerol phosphate synthase compare
PS417_04420 -5.3 -10.8 histidinol dehydrogenase compare
PS417_25725 -5.3 -14.8 anthranilate synthase component I compare
PS417_25720 -5.2 -11.1 anthranilate synthase component II compare
PS417_24745 -5.1 -7.0 gamma-glutamyl phosphate reductase compare
PS417_23810 -4.9 -14.3 acetolactate synthase 3 catalytic subunit compare
PS417_01850 -4.9 -11.8 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PS417_12290 -4.8 -10.7 sulfite reductase compare
PS417_23995 -4.8 -1.8 preprotein translocase subunit SecG compare
PS417_18530 -4.7 -6.5 O-succinylhomoserine sulfhydrylase compare
PS417_23545 -4.6 -4.6 gamma-glutamyl kinase compare
PS417_18395 -4.2 -2.9 D-ribose ABC transporter, permease component RbsC (from data) compare
PS417_18400 -4.1 -6.1 D-ribose ABC transporter, ATPase component RbsA (from data) compare
PS417_12855 -4.1 -7.2 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_02005 -3.9 -14.5 glutamate synthase compare
PS417_20125 -3.8 -5.3 phosphoribosylglycinamide formyltransferase compare
PS417_24155 -3.8 -4.5 ATP-binding protein compare
PS417_25715 -3.8 -5.3 anthranilate phosphoribosyltransferase compare
PS417_02000 -3.8 -18.0 glutamate synthase compare
PS417_23110 -3.8 -6.7 2-isopropylmalate synthase compare
PS417_21035 -3.7 -13.2 multidrug transporter compare
PS417_05595 -3.7 -7.7 ornithine carbamoyltransferase compare
PS417_02415 -3.7 -5.7 phosphoserine phosphatase compare
PS417_26730 -3.6 -1.9 pyrroline-5-carboxylate reductase compare
PS417_26745 -3.6 -4.3 methionine biosynthesis protein MetW compare
PS417_26890 -3.5 -4.9 dihydroxy-acid dehydratase compare
PS417_00180 -3.1 -3.5 tryptophan synthase subunit alpha compare
PS417_22690 -3.0 -3.4 phosphogluconate dehydratase compare
PS417_01580 -2.9 -1.5 imidazole glycerol phosphate synthase compare
PS417_25710 -2.9 -2.5 indole-3-glycerol-phosphate synthase compare
PS417_20985 -2.9 -4.4 porin compare
PS417_01560 -2.8 -3.4 imidazoleglycerol-phosphate dehydratase compare
PS417_08125 -2.7 -2.2 prephenate dehydratase compare
PS417_27835 -2.6 -11.0 endoribonuclease compare
PS417_01605 -2.6 -3.0 phosphoglycerate mutase compare
PS417_26995 -2.3 -9.9 phosphoserine phosphatase compare
PS417_08230 -2.3 -3.2 lipopolysaccharide biosynthesis protein RfbH compare
PS417_03925 -2.3 -7.2 nicotinate-nucleotide pyrophosphorylase compare
PS417_06375 -2.2 -1.8 deoxycytidine triphosphate deaminase compare
PS417_23770 -2.2 -3.3 exodeoxyribonuclease V subunit alpha compare
PS417_24835 -2.1 -7.7 hypothetical protein compare
PS417_26985 -2.1 -7.4 phosphoenolpyruvate-protein phosphotransferase compare
PS417_22385 -2.1 -10.8 quinolinate synthase A compare
PS417_18390 -2.1 -7.7 LacI family transcriptional regulator compare
PS417_26040 -2.1 -4.6 malate synthase compare
PS417_20160 -2.1 -6.1 cysteine synthase compare
PS417_27195 -2.0 -1.3 N-acetylglutamate synthase compare
PS417_01570 -1.9 -1.2 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase compare
PS417_08225 -1.7 -4.8 acetolactate synthase compare
PS417_08195 -1.6 -9.6 hypothetical protein compare
PS417_22570 -1.5 -1.6 H-NS histone compare
PS417_27875 -1.5 -9.4 histidine kinase compare
PS417_26990 -1.5 -1.9 RNA pyrophosphohydrolase compare
PS417_08200 -1.5 -4.8 hypothetical protein compare
PS417_08245 -1.4 -1.5 CDP-6-deoxy-L-threo-D-glycero-4-hexulose-3- dehydrase reductase compare
PS417_01710 -1.4 -6.4 histidine utilization repressor compare
PS417_08205 -1.4 -4.5 acetyltransferase compare
PS417_07170 -1.3 -4.0 hypothetical protein compare
PS417_01115 -1.3 -2.4 serine acetyltransferase compare
PS417_23775 -1.3 -2.5 exodeoxyribonuclease V subunit beta compare
PS417_21750 -1.3 -10.3 acetyl-CoA synthetase compare
PS417_17495 -1.3 -5.0 multidrug ABC transporter permease compare
PS417_10995 -1.3 -3.2 GntR family transcriptional regulator compare
PS417_17480 -1.2 -4.3 branched-chain amino acid ABC transporter substrate-binding protein compare
PS417_06205 -1.2 -8.6 methionine aminopeptidase compare
PS417_20610 -1.2 -1.7 hypothetical protein compare
PS417_22520 -1.2 -3.0 histidine kinase compare
PS417_19600 -1.2 -1.7 exonuclease compare
PS417_21125 -1.2 -5.6 phosphoadenosine phosphosulfate reductase compare
PS417_17565 -1.1 -3.0 branched-chain amino acid aminotransferase compare
PS417_17505 -1.1 -3.2 LuxR family transcriptional regulator compare
PS417_04595 -1.1 -3.2 cell division protein MraZ compare
PS417_16520 -1.1 -2.9 cold-shock protein compare
PS417_11845 -1.1 -3.6 RpiR family transcriptional regulator compare
PS417_17485 -1.1 -4.4 membrane protein compare
PS417_04270 -1.1 -6.7 ribonuclease G compare
PS417_16490 -1.1 -1.9 cell division protein FtsK compare
PS417_20665 -1.0 -4.2 hypothetical protein compare
PS417_27010 -1.0 -6.3 threonine dehydratase compare
PS417_03245 -1.0 -5.7 omega amino acid--pyruvate aminotransferase conserved
PS417_21705 -1.0 -4.4 arginine N-succinyltransferase compare
PS417_06685 -1.0 -1.3 beta-ketoadipyl CoA thiolase compare
PS417_06200 -1.0 -3.6 protein-PII uridylyltransferase compare
PS417_08620 -1.0 -1.2 hypothetical protein compare
PS417_17420 -1.0 -6.2 ethanol oxidation regulatory protein ercA (from data) compare
PS417_17435 -1.0 -6.6 dehydrogenase compare
PS417_08380 -1.0 -4.9 ABC transporter ATP-binding protein compare
PS417_21655 -1.0 -1.6 aspartate kinase compare
PS417_01915 -1.0 -1.2 ATP-dependent protease ATP-binding subunit HslU compare
PS417_00485 -1.0 -3.2 ABC transporter permease compare
PS417_14940 -1.0 -2.2 LysR family transcriptional regulator compare
PS417_08580 -1.0 -3.7 histidine kinase compare
PS417_09245 -1.0 -1.9 recombinase RdgC compare
PS417_25940 -1.0 -5.1 pyrroloquinoline quinone biosynthesis protein PqqE compare
PS417_25920 -0.9 -4.7 pyrroloquinoline quinone biosynthesis protein PqqF compare
PS417_27155 -0.9 -1.8 aliphatic sulfonates transport ATP-binding subunit compare
PS417_25930 -0.9 -5.2 pyrroloquinoline quinone biosynthesis protein PqqC compare
PS417_26175 -0.9 -1.2 sarcosine oxidase subunit gamma compare
PS417_24615 -0.9 -1.2 hypothetical protein compare
PS417_13510 -0.9 -1.3 polyketide cyclase compare
PS417_12075 -0.9 -4.4 DNA-binding protein compare
PS417_10405 -0.9 -1.3 filamentous hemagglutinin compare
PS417_00085 -0.9 -1.4 16S rRNA methyltransferase compare
PS417_27035 -0.9 -3.7 FAD-linked oxidase compare
PS417_28510 -0.9 -4.7 chromosome partitioning protein compare
PS417_19335 -0.9 -2.9 isochorismatase compare
PS417_05840 -0.9 -2.5 LuxR family transcriptional regulator compare
PS417_04650 -0.9 -1.4 D-alanine--D-alanine ligase compare
PS417_19200 -0.9 -2.0 fumarate hydratase compare
PS417_28080 -0.9 -6.8 phosphate ABC transporter permease compare
PS417_22445 -0.9 -2.2 ATP-dependent DNA helicase RuvB compare
PS417_27435 -0.8 -3.8 polyphosphate kinase compare
PS417_20635 -0.8 -1.0 ABC transporter ATP-binding protein compare
PS417_09150 -0.8 -2.0 energy transducer TonB compare
PS417_04410 -0.8 -0.7 hypothetical protein compare
PS417_17240 -0.8 -2.8 trigger factor compare
PS417_28070 -0.8 -3.6 phosphate ABC transporter ATP-binding protein compare
PS417_16510 -0.8 -2.3 Clp protease ClpX compare
PS417_16570 -0.8 -4.3 isocitrate lyase compare
PS417_09235 -0.8 -1.0 molecular chaperone compare
PS417_09725 -0.8 -4.2 transporter compare
PS417_00510 -0.8 -0.9 membrane protein compare
PS417_27585 -0.8 -2.1 diaminopimelate epimerase compare
PS417_16515 -0.8 -1.8 Clp protease ClpS compare
PS417_15225 -0.8 -2.7 alpha/beta hydrolase compare
PS417_14085 -0.8 -3.3 hypothetical protein compare
PS417_13645 -0.8 -2.3 ABC transporter compare
PS417_01995 -0.8 -1.6 hypothetical protein compare
PS417_07115 -0.8 -5.4 L-aspartate oxidase compare
PS417_15465 -0.8 -2.1 carboxynorspermidine decarboxylase compare
PS417_19190 -0.8 -2.7 BolA family transcriptional regulator compare
PS417_23900 -0.8 -4.5 poly(A) polymerase compare
PS417_12005 -0.8 -1.8 hypothetical protein compare
PS417_17450 -0.7 -2.7 amino acid ABC transporter substrate-binding protein compare
PS417_07875 -0.7 -0.9 hypothetical protein compare
PS417_14075 -0.7 -1.4 hypothetical protein compare
PS417_07945 -0.7 -2.2 hypothetical protein compare
PS417_09210 -0.7 -1.5 TetR family transcriptional regulator compare
PS417_20855 -0.7 -1.4 hypothetical protein compare
PS417_08545 -0.7 -1.0 aromatic ring-opening dioxygenase LigB compare
PS417_00295 -0.7 -3.5 hypothetical protein compare
PS417_22695 -0.7 -4.8 glyceraldehyde-3-phosphate dehydrogenase compare
PS417_21090 -0.7 -1.2 hypothetical protein compare
PS417_27815 -0.7 -0.8 hypothetical protein compare
PS417_22210 -0.7 -1.3 AraC family transcriptional regulator compare
PS417_12400 -0.7 -2.6 oxidoreductase compare
PS417_17455 -0.7 -1.9 cytochrome C compare
PS417_16555 -0.7 -1.8 cupin compare
PS417_04225 -0.7 -1.3 conjugal transfer protein TraR compare
PS417_11930 -0.7 -3.5 hypothetical protein compare
PS417_17610 -0.7 -1.2 AsnC family transcriptional regulator compare
PS417_08220 -0.7 -0.7 epimerase compare
PS417_13800 -0.7 -2.1 4-deoxy-4-formamido-L-arabinose-phospho-UDP deformylase compare
PS417_20170 -0.7 -2.1 hypothetical protein compare
PS417_08730 -0.7 -1.2 cytochrome C compare
PS417_15285 -0.7 -0.9 type VI secretion protein compare
PS417_23105 -0.6 -1.2 hypothetical protein compare
PS417_27595 -0.6 -1.3 recombinase XerC compare
PS417_00960 -0.6 -1.7 transcriptional regulator compare
PS417_02045 -0.6 -2.7 3-oxoacyl-ACP synthase compare
PS417_15470 -0.6 -3.2 saccharopine dehydrogenase compare
PS417_00355 -0.6 -1.3 metal ABC transporter permease compare
PS417_24370 -0.6 -0.6 (2Fe-2S)-binding protein compare
PS417_01715 -0.6 -1.1 hypothetical protein compare
PS417_12535 -0.6 -1.7 nitrilase compare
PS417_04865 -0.6 -2.3 molybdenum cofactor biosynthesis protein MoaC compare
PS417_13140 -0.6 -1.7 oxidoreductase compare
PS417_04080 -0.6 -1.6 peptide ABC transporter substrate-binding protein compare
PS417_18025 -0.6 -2.1 cytochrome C compare
PS417_10135 -0.6 -1.3 phage tail protein compare
PS417_00620 -0.6 -2.8 GntR family transcriptional regulator compare
PS417_15510 -0.6 -1.5 hypothetical protein compare
PS417_19480 -0.6 -2.9 aminopeptidase compare
PS417_11405 -0.6 -2.1 precorrin 6A synthase compare
PS417_18450 -0.6 -2.1 hydrolase compare
PS417_08155 -0.6 -1.8 integration host factor subunit beta compare
PS417_17735 -0.6 -1.1 LacI family transcriptional regulator compare
PS417_14030 -0.6 -2.5 hypothetical protein compare
PS417_18435 -0.6 -1.2 hypothetical protein compare
PS417_18800 -0.6 -1.1 hypothetical protein compare
PS417_21700 -0.6 -2.2 arginine N-succinyltransferase compare
PS417_04585 -0.6 -1.3 hypothetical protein compare
PS417_03240 -0.6 -3.3 LysR family transcriptional regulator compare
PS417_11060 -0.6 -1.9 transporter compare
PS417_25175 -0.6 -1.5 hypothetical protein compare


Specific Phenotypes

For 1 genes in this experiment

For carbon source Uridine in Pseudomonas simiae WCS417

For carbon source Uridine across organisms