Experiment set3IT016 for Pseudomonas simiae WCS417

Compare to:

D-Glucosamine Hydrochloride carbon source

200 most important genes:

  gene name fitness t score description  
PS417_01575 -9.2 -5.5 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PS417_18600 -7.7 -5.3 isopropylmalate isomerase compare
PS417_28220 -7.0 -4.8 LysR family transcriptional regulator compare
PS417_04415 -6.5 -8.9 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PS417_18585 -5.9 -7.0 3-isopropylmalate dehydrogenase compare
PS417_23805 -5.4 -7.4 acetolactate synthase 3 regulatory subunit compare
PS417_18560 -5.3 -9.9 N-(5'-phosphoribosyl)anthranilate isomerase compare
PS417_25725 -5.3 -19.0 anthranilate synthase component I compare
PS417_25720 -5.3 -7.8 anthranilate synthase component II compare
PS417_23800 -5.2 -13.4 ketol-acid reductoisomerase compare
PS417_00180 -5.1 -3.5 tryptophan synthase subunit alpha compare
PS417_27040 -5.1 -4.6 3-phosphoglycerate dehydrogenase compare
PS417_04420 -5.1 -12.9 histidinol dehydrogenase compare
PS417_02510 -5.1 -4.6 ATP phosphoribosyltransferase regulatory subunit compare
PS417_26740 -5.1 -12.9 homoserine acetyltransferase compare
PS417_18595 -4.9 -3.9 3-isopropylmalate dehydratase compare
PS417_27795 -4.8 -2.0 orotate phosphoribosyltransferase compare
PS417_24745 -4.8 -6.5 gamma-glutamyl phosphate reductase compare
PS417_23545 -4.6 -3.6 gamma-glutamyl kinase compare
PS417_01565 -4.6 -4.3 imidazole glycerol phosphate synthase compare
PS417_00185 -4.5 -6.2 tryptophan synthase subunit beta compare
PS417_23995 -4.5 -1.9 preprotein translocase subunit SecG compare
PS417_01855 -4.5 -3.3 phosphoribosyl-AMP cyclohydrolase compare
PS417_23810 -4.4 -10.5 acetolactate synthase 3 catalytic subunit compare
PS417_12290 -4.1 -8.5 sulfite reductase compare
PS417_16465 -4.1 -14.5 sirohydrochlorin ferrochelatase compare
PS417_23110 -4.0 -8.7 2-isopropylmalate synthase compare
PS417_27195 -3.9 -2.2 N-acetylglutamate synthase compare
PS417_25710 -3.9 -2.2 indole-3-glycerol-phosphate synthase compare
PS417_18530 -3.8 -7.0 O-succinylhomoserine sulfhydrylase compare
PS417_12855 -3.5 -5.8 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_12125 -3.4 -10.1 D-glucosaminate dehydratase (EC 4.3.1.9) (from data) conserved
PS417_26730 -3.4 -1.9 pyrroline-5-carboxylate reductase compare
PS417_05595 -3.3 -6.4 ornithine carbamoyltransferase compare
PS417_02005 -3.3 -14.5 glutamate synthase compare
PS417_26890 -3.3 -5.0 dihydroxy-acid dehydratase compare
PS417_26745 -3.1 -3.9 methionine biosynthesis protein MetW compare
PS417_20160 -3.1 -6.0 cysteine synthase compare
PS417_01560 -3.0 -4.2 imidazoleglycerol-phosphate dehydratase compare
PS417_01850 -3.0 -12.1 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PS417_01580 -3.0 -2.9 imidazole glycerol phosphate synthase compare
PS417_02000 -2.9 -14.6 glutamate synthase compare
PS417_25715 -2.8 -4.5 anthranilate phosphoribosyltransferase compare
PS417_24155 -2.8 -4.6 ATP-binding protein compare
PS417_22990 -2.7 -2.1 iron dicitrate transport regulator FecR compare
PS417_02415 -2.6 -6.0 phosphoserine phosphatase compare
PS417_01605 -2.5 -2.7 phosphoglycerate mutase compare
PS417_20985 -2.2 -2.6 porin compare
PS417_20610 -2.1 -2.4 hypothetical protein compare
PS417_26995 -2.1 -10.2 phosphoserine phosphatase compare
PS417_20125 -2.0 -4.6 phosphoribosylglycinamide formyltransferase compare
PS417_12095 -2.0 -8.0 ABC transporter substrate-binding protein conserved
PS417_12105 -2.0 -5.9 ABC transporter permease conserved
PS417_08125 -1.9 -2.1 prephenate dehydratase compare
PS417_21125 -1.8 -9.1 phosphoadenosine phosphosulfate reductase compare
PS417_12100 -1.8 -7.1 amino acid ABC transporter permease conserved
PS417_23770 -1.8 -3.1 exodeoxyribonuclease V subunit alpha compare
PS417_08155 -1.8 -2.7 integration host factor subunit beta compare
PS417_10405 -1.6 -2.1 filamentous hemagglutinin compare
PS417_12120 -1.6 -2.9 IclR family transcriptional regulator compare
PS417_00385 -1.6 -1.6 Fur family transcriptional regulator compare
PS417_06680 -1.5 -9.9 nuclease PIN compare
PS417_27800 -1.5 -5.8 exodeoxyribonuclease III compare
PS417_06375 -1.4 -1.5 deoxycytidine triphosphate deaminase compare
PS417_21510 -1.4 -1.6 histidine kinase compare
PS417_21480 -1.4 -2.4 23S rRNA pseudouridylate synthase compare
PS417_08200 -1.3 -3.4 hypothetical protein compare
PS417_08195 -1.3 -7.4 hypothetical protein compare
PS417_08540 -1.3 -3.8 RNA helicase compare
PS417_21150 -1.3 -5.9 HAD family hydrolase conserved
PS417_08220 -1.3 -1.2 epimerase compare
PS417_12110 -1.3 -2.5 ATP-binding protein compare
PS417_26040 -1.2 -3.7 malate synthase compare
PS417_06200 -1.2 -4.0 protein-PII uridylyltransferase compare
PS417_10995 -1.2 -2.4 GntR family transcriptional regulator compare
PS417_27940 -1.2 -1.8 type VI secretion protein compare
PS417_08225 -1.2 -5.4 acetolactate synthase compare
PS417_04270 -1.2 -6.5 ribonuclease G compare
PS417_07940 -1.1 -2.4 hypothetical protein compare
PS417_22520 -1.1 -2.6 histidine kinase compare
PS417_21000 -1.1 -3.0 CrfX protein compare
PS417_23475 -1.1 -2.0 hypothetical protein compare
PS417_08545 -1.1 -2.3 aromatic ring-opening dioxygenase LigB compare
PS417_08580 -1.1 -6.1 histidine kinase compare
PS417_24835 -1.1 -3.6 hypothetical protein compare
PS417_27010 -1.0 -5.1 threonine dehydratase compare
PS417_22270 -1.0 -3.9 hypothetical protein compare
PS417_27595 -1.0 -2.3 recombinase XerC compare
PS417_01570 -1.0 -0.8 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase compare
PS417_03925 -1.0 -4.0 nicotinate-nucleotide pyrophosphorylase compare
PS417_22385 -1.0 -6.7 quinolinate synthase A compare
PS417_13140 -0.9 -2.3 oxidoreductase compare
PS417_02485 -0.9 -2.9 tRNA delta(2)-isopentenylpyrophosphate transferase compare
PS417_24100 -0.9 -5.0 transcriptional regulator PdhR compare
PS417_10675 -0.9 -1.3 TetR family transcriptional regulator compare
PS417_27135 -0.9 -1.1 glutamine synthetase compare
PS417_21035 -0.9 -5.0 multidrug transporter compare
PS417_20055 -0.9 -2.8 cob(II)yrinic acid a,c-diamide reductase compare
PS417_17945 -0.9 -1.3 hypothetical protein compare
PS417_17480 -0.9 -3.7 branched-chain amino acid ABC transporter substrate-binding protein compare
PS417_08230 -0.9 -2.2 lipopolysaccharide biosynthesis protein RfbH compare
PS417_04875 -0.9 -1.7 molybdenum cofactor biosynthesis protein MoaE compare
PS417_11845 -0.9 -3.5 RpiR family transcriptional regulator compare
PS417_08245 -0.8 -1.1 CDP-6-deoxy-L-threo-D-glycero-4-hexulose-3- dehydrase reductase compare
PS417_08410 -0.8 -2.1 hypothetical protein compare
PS417_22210 -0.8 -1.7 AraC family transcriptional regulator compare
PS417_26900 -0.8 -1.5 L-cystine transporter tcyP compare
PS417_08740 -0.8 -2.3 ribose-phosphate pyrophosphokinase compare
PS417_20825 -0.8 -1.7 drug:proton antiporter compare
PS417_10245 -0.8 -1.6 hypothetical protein compare
PS417_01715 -0.8 -1.2 hypothetical protein compare
PS417_16715 -0.8 -1.1 DoxX family protein compare
PS417_24935 -0.8 -1.1 hypothetical protein compare
PS417_15915 -0.8 -1.4 hypothetical protein compare
PS417_20665 -0.8 -3.7 hypothetical protein compare
PS417_06710 -0.8 -1.7 beta-ketoadipyl CoA thiolase compare
PS417_03310 -0.8 -3.3 carbonate dehydratase compare
PS417_05570 -0.8 -3.5 DeoR faimly transcriptional regulator compare
PS417_22570 -0.8 -1.0 H-NS histone compare
PS417_07875 -0.8 -1.0 hypothetical protein compare
PS417_04410 -0.8 -1.0 hypothetical protein compare
PS417_00175 -0.8 -1.2 CigR compare
PS417_09730 -0.7 -2.1 adenylylsulfate kinase compare
PS417_18825 -0.7 -3.5 TetR family transcriptional regulator compare
PS417_06645 -0.7 -4.7 RNA polymerase-associated protein RapA compare
PS417_17565 -0.7 -2.0 branched-chain amino acid aminotransferase compare
PS417_28080 -0.7 -4.7 phosphate ABC transporter permease compare
PS417_18775 -0.7 -3.1 5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase compare
PS417_06735 -0.7 -1.7 3-oxoadipate enol-lactonase compare
PS417_27875 -0.7 -4.8 histidine kinase compare
PS417_06330 -0.7 -3.1 S-(hydroxymethyl)glutathione dehydrogenase compare
PS417_22445 -0.7 -2.1 ATP-dependent DNA helicase RuvB compare
PS417_21655 -0.7 -1.0 aspartate kinase compare
PS417_25920 -0.7 -4.8 pyrroloquinoline quinone biosynthesis protein PqqF compare
PS417_28070 -0.7 -3.4 phosphate ABC transporter ATP-binding protein compare
PS417_12490 -0.7 -1.4 autotransporter adhesin compare
PS417_09235 -0.7 -1.0 molecular chaperone compare
PS417_21750 -0.7 -5.7 acetyl-CoA synthetase compare
PS417_05905 -0.7 -1.5 hypothetical protein compare
PS417_02385 -0.7 -1.5 esterase compare
PS417_07165 -0.7 -4.0 dihydrodipicolinate synthase compare
PS417_23900 -0.7 -4.6 poly(A) polymerase compare
PS417_21705 -0.7 -3.3 arginine N-succinyltransferase compare
PS417_03780 -0.7 -2.4 general secretion pathway protein GspH compare
PS417_05985 -0.7 -2.5 chemotaxis protein CheY compare
PS417_21210 -0.7 -1.5 amidotransferase compare
PS417_19605 -0.7 -0.8 hypothetical protein compare
PS417_02555 -0.6 -5.3 exoribonuclease R compare
PS417_15225 -0.6 -1.9 alpha/beta hydrolase compare
PS417_02370 -0.6 -1.6 ADP-ribose pyrophosphatase compare
PS417_27305 -0.6 -2.8 5-formyltetrahydrofolate cyclo-ligase compare
PS417_07770 -0.6 -1.7 hypothetical protein compare
PS417_04180 -0.6 -2.2 GntR family transcriptional regulator compare
PS417_09210 -0.6 -0.8 TetR family transcriptional regulator compare
PS417_24710 -0.6 -2.7 lipoprotein compare
PS417_20140 -0.6 -2.1 nucleoprotein/polynucleotide-associated enzyme compare
PS417_16255 -0.6 -2.2 RNA polymerase sigma factor compare
PS417_27435 -0.6 -3.9 polyphosphate kinase compare
PS417_01995 -0.6 -1.3 hypothetical protein compare
PS417_26990 -0.6 -0.8 RNA pyrophosphohydrolase compare
PS417_01710 -0.6 -2.6 histidine utilization repressor compare
PS417_26295 -0.6 -1.5 gamma-butyrobetaine dioxygenase compare
PS417_07170 -0.6 -2.6 hypothetical protein compare
PS417_08430 -0.6 -3.4 phospho-2-dehydro-3-deoxyheptonate aldolase compare
PS417_17350 -0.6 -2.6 copper resistance protein CopD compare
PS417_02765 -0.6 -1.3 phosphate starvation-inducible protein PsiF compare
PS417_00085 -0.6 -1.6 16S rRNA methyltransferase compare
PS417_23855 -0.6 -1.2 ABC transporter substrate-binding protein compare
PS417_13165 -0.6 -1.6 peroxidase compare
PS417_26695 -0.6 -1.0 uracil phosphoribosyltransferase compare
PS417_15780 -0.6 -2.1 membrane protein compare
PS417_04590 -0.6 -3.3 methyltransferase compare
PS417_21695 -0.6 -1.9 succinylglutamate-semialdehyde dehydrogenase compare
PS417_08380 -0.6 -3.9 ABC transporter ATP-binding protein compare
PS417_28075 -0.6 -3.1 phosphate ABC transporter permease compare
PS417_00195 -0.6 -1.3 hypothetical protein compare
PS417_03705 -0.6 -1.3 2-alkenal reductase compare
PS417_08205 -0.6 -1.8 acetyltransferase compare
PS417_05815 -0.6 -2.2 recombinase RecA compare
PS417_05120 -0.6 -1.3 RNA polymerase subunit sigma-24 compare
PS417_14085 -0.6 -2.6 hypothetical protein compare
PS417_24535 -0.6 -1.1 membrane protein compare
PS417_11040 -0.6 -2.7 aldose epimerase compare
PS417_12310 -0.6 -4.3 methionine synthase compare
PS417_00495 -0.6 -2.7 ABC transporter permease compare
PS417_00960 -0.6 -1.5 transcriptional regulator compare
PS417_11345 -0.6 -2.7 membrane protein compare
PS417_03350 -0.6 -1.9 cytochrome C peroxidase compare
PS417_14555 -0.6 -1.2 AsnC family transcriptional regulator compare
PS417_23315 -0.6 -0.7 transcriptional regulator compare
PS417_05695 -0.6 -2.5 transcriptional regulator compare
PS417_17495 -0.6 -3.4 multidrug ABC transporter permease compare
PS417_02560 -0.5 -1.6 23S rRNA methyltransferase compare
PS417_01090 -0.5 -3.0 hypothetical protein compare
PS417_21165 -0.5 -2.2 LysR family transcriptional regulator compare
PS417_15290 -0.5 -1.7 type VI secretion protein compare
PS417_10275 -0.5 -1.2 histidine kinase compare
PS417_17420 -0.5 -2.8 ethanol oxidation regulatory protein ercA (from data) compare
PS417_08510 -0.5 -1.2 LysR family transcriptional regulator compare
PS417_13145 -0.5 -1.8 50S ribosomal protein L21 compare


Specific Phenotypes

For 11 genes in this experiment

For carbon source D-Glucosamine Hydrochloride in Pseudomonas simiae WCS417

For carbon source D-Glucosamine Hydrochloride across organisms