Experiment set3IT016 for Pontibacter actiniarum KMM 6156, DSM 19842

Compare to:

marine broth with Chloramphenicol 0.0005 mg/ml

200 most detrimental genes:

  gene name fitness t score description  
CA264_17205 +1.2 3.2 diacylglycerol kinase compare
CA264_06845 +1.0 3.2 hypothetical protein compare
CA264_12400 +0.9 6.4 hypothetical protein compare
CA264_12325 +0.8 6.2 polysaccharide biosynthesis protein compare
CA264_12405 +0.8 5.4 hypothetical protein compare
CA264_20845 +0.8 1.1 hypothetical protein compare
CA264_17500 +0.7 2.3 molecular chaperone DnaK compare
CA264_19925 +0.7 4.8 peptidyl-prolyl cis-trans isomerase compare
CA264_20925 +0.7 1.4 hypothetical protein compare
CA264_10090 +0.7 3.4 (2Fe-2S)-binding protein compare
CA264_15150 +0.7 2.2 hypothetical protein compare
CA264_20125 +0.7 3.2 hypothetical protein compare
CA264_20060 +0.7 1.5 ribosome silencing factor RsfS compare
CA264_12350 +0.6 4.5 glycosyltransferase family 1 protein compare
CA264_12365 +0.6 5.4 asparagine synthetase B compare
CA264_08085 +0.6 2.1 short-chain dehydrogenase compare
CA264_21225 +0.6 1.3 hypothetical protein compare
CA264_00300 +0.6 2.0 VWA domain-containing protein compare
CA264_00085 +0.6 2.5 hypothetical protein compare
CA264_01545 +0.6 1.5 3-deoxy-7-phosphoheptulonate synthase compare
CA264_01790 +0.6 2.2 hypothetical protein compare
CA264_12860 +0.6 1.6 hypothetical protein compare
CA264_20715 +0.6 2.0 metallophosphatase compare
CA264_03605 +0.5 1.3 DNA-binding protein compare
CA264_15175 +0.5 0.9 biopolymer transporter ExbD compare
CA264_07245 +0.5 2.7 hypothetical protein compare
CA264_07890 +0.5 1.8 hypothetical protein compare
CA264_12355 +0.5 3.5 polysaccharide deacetylase compare
CA264_12335 +0.5 3.6 pyridoxal phosphate-dependent aminotransferase compare
CA264_12155 +0.5 1.1 histidine phosphatase family protein compare
CA264_07515 +0.5 1.4 hypothetical protein compare
CA264_10950 +0.5 1.8 phenylacetate-CoA oxygenase subunit PaaI compare
CA264_10955 +0.5 1.0 phenylacetate-CoA oxygenase subunit PaaJ compare
CA264_15235 +0.5 3.9 hypothetical protein compare
CA264_12175 +0.5 1.4 hypothetical protein compare
CA264_09375 +0.5 1.4 transcriptional regulator compare
CA264_21445 +0.5 1.3 metal transporter compare
CA264_04610 +0.5 3.7 chain length determinant protein compare
CA264_20325 +0.5 2.5 cell envelope biogenesis protein OmpA compare
CA264_13240 +0.5 1.4 hypothetical protein compare
CA264_14475 +0.5 2.5 hypothetical protein compare
CA264_01425 +0.5 3.9 RelA/SpoT family protein compare
CA264_19005 +0.5 3.8 SusC/RagA family TonB-linked outer membrane protein compare
CA264_12370 +0.5 3.8 hypothetical protein compare
CA264_13790 +0.5 1.6 hypothetical protein compare
CA264_05930 +0.5 1.8 glyoxalase compare
CA264_02415 +0.5 1.2 dethiobiotin synthase compare
CA264_00135 +0.5 1.7 transcriptional regulator compare
CA264_10980 +0.5 1.5 peptidase M23 compare
CA264_05830 +0.5 1.3 hypothetical protein compare
CA264_10255 +0.5 1.0 hypothetical protein compare
CA264_01645 +0.5 2.0 hypothetical protein compare
CA264_02055 +0.5 0.7 hypothetical protein compare
CA264_07275 +0.5 3.2 hypothetical protein compare
CA264_21195 +0.4 2.1 hypothetical protein compare
CA264_18750 +0.4 2.1 FmdC precursor compare
CA264_00730 +0.4 1.5 hypothetical protein compare
CA264_02080 +0.4 0.6 hypothetical protein compare
CA264_03775 +0.4 3.0 hypothetical protein compare
CA264_15680 +0.4 2.1 hypothetical protein compare
CA264_08665 +0.4 1.5 N-acetylmuramoyl-L-alanine amidase compare
CA264_12280 +0.4 1.1 hypothetical protein compare
CA264_21300 +0.4 0.8 hypothetical protein compare
CA264_20680 +0.4 2.5 hypothetical protein compare
CA264_18825 +0.4 1.8 hypothetical protein compare
CA264_01150 +0.4 2.3 Maebl compare
CA264_15510 +0.4 2.8 DUF4864 domain-containing protein compare
CA264_12375 +0.4 2.8 hypothetical protein compare
CA264_13885 +0.4 1.8 DsbA family protein compare
CA264_00780 +0.4 1.0 glyoxalase compare
CA264_18480 +0.4 0.5 hypothetical protein compare
CA264_17110 +0.4 2.2 radical SAM protein compare
CA264_04160 +0.4 1.8 hypothetical protein compare
CA264_03890 +0.4 2.7 family 2 glycosyl transferase compare
CA264_16490 +0.4 2.4 glucose-1-phosphate thymidylyltransferase compare
CA264_11215 +0.4 1.6 N-acetyltransferase compare
CA264_14715 +0.4 1.7 hypothetical protein compare
CA264_02725 +0.4 2.4 hypothetical protein compare
CA264_01855 +0.4 2.1 carbonic anhydrase compare
CA264_16720 +0.4 1.0 hypothetical protein compare
CA264_20420 +0.4 1.8 thiazole synthase compare
CA264_17915 +0.4 1.4 LPS biosynthesis protein WbpP compare
CA264_21285 +0.4 0.6 hypothetical protein compare
CA264_01145 +0.4 1.9 dienelactone hydrolase compare
CA264_08480 +0.4 2.7 murein transglycosylase compare
CA264_13765 +0.4 2.0 DNA-binding transcriptional regulator OxyR compare
CA264_20565 +0.4 2.0 hypothetical protein compare
CA264_06160 +0.4 1.1 hypothetical protein compare
CA264_07835 +0.4 2.3 RNA methyltransferase compare
CA264_09130 +0.4 2.8 hypothetical protein compare
CA264_20785 +0.4 2.5 hypothetical protein compare
CA264_06345 +0.4 3.1 hypothetical protein compare
CA264_20945 +0.4 0.9 hypothetical protein compare
CA264_15880 +0.4 0.6 5-formyltetrahydrofolate cyclo-ligase compare
CA264_11890 +0.4 0.9 NADH oxidase compare
CA264_19860 +0.4 1.6 NifU family protein compare
CA264_02580 +0.3 1.4 transcriptional regulator compare
CA264_03910 +0.3 2.4 family 2 glycosyl transferase compare
CA264_01815 +0.3 1.0 N-acetyltransferase compare
CA264_03465 +0.3 1.8 hypothetical protein compare
CA264_21585 +0.3 2.2 hypothetical protein compare
CA264_01595 +0.3 1.8 hypothetical protein compare
CA264_15335 +0.3 3.2 SusC/RagA family TonB-linked outer membrane protein compare
CA264_05440 +0.3 2.3 glucose-fructose oxidoreductase compare
CA264_08780 +0.3 2.3 hypothetical protein compare
CA264_12595 +0.3 1.3 5-(carboxyamino)imidazole ribonucleotide mutase compare
CA264_10920 +0.3 2.8 helix-turn-helix-type transcriptional regulator compare
CA264_10275 +0.3 1.6 transcriptional regulator compare
CA264_12625 +0.3 0.5 RDD family protein compare
CA264_21000 +0.3 2.4 hypothetical protein compare
CA264_12785 +0.3 0.8 Rieske (2Fe-2S) protein compare
CA264_12385 +0.3 2.2 glycosyl transferase compare
CA264_15425 +0.3 0.9 DUF4834 domain-containing protein compare
CA264_19950 +0.3 1.6 hypothetical protein compare
CA264_21090 +0.3 1.8 hypothetical protein compare
CA264_18090 +0.3 1.7 DUF305 domain-containing protein compare
CA264_13215 +0.3 1.1 hypothetical protein compare
CA264_13025 +0.3 1.1 hypothetical protein compare
CA264_15105 +0.3 1.7 hypothetical protein compare
CA264_15845 +0.3 1.4 hypothetical protein compare
CA264_06445 +0.3 1.0 NUDIX hydrolase compare
CA264_18045 +0.3 0.8 hypothetical protein compare
CA264_20530 +0.3 1.2 hypothetical protein compare
CA264_00315 +0.3 1.4 hypothetical protein compare
CA264_01085 +0.3 2.1 hypothetical protein compare
CA264_20285 +0.3 0.6 hypothetical protein compare
CA264_17095 +0.3 1.0 FeoB-associated Cys-rich membrane protein compare
CA264_21185 +0.3 1.6 hypothetical protein compare
CA264_19895 +0.3 1.7 phosphoribosyltransferase compare
CA264_03155 +0.3 1.6 hypothetical protein compare
CA264_19085 +0.3 1.3 RNA polymerase subunit sigma-24 compare
CA264_18220 +0.3 1.3 acylphosphatase compare
CA264_07335 +0.3 1.6 transcriptional regulator compare
CA264_19820 +0.3 2.0 dessication-associated protein compare
CA264_03905 +0.3 1.2 polysaccharide deacetylase family protein compare
CA264_02465 +0.3 1.3 hypothetical protein compare
CA264_15005 +0.3 1.8 magnesium/cobalt efflux protein compare
CA264_18195 +0.3 1.1 chaperonin compare
CA264_02890 +0.3 1.3 hypothetical protein compare
CA264_15185 +0.3 1.7 hypothetical protein compare
CA264_16870 +0.3 1.0 N-acetyltransferase compare
CA264_19105 +0.3 1.4 hypothetical protein compare
CA264_00660 +0.3 1.9 hypothetical protein compare
CA264_08330 +0.3 1.5 hypothetical protein compare
CA264_20685 +0.3 1.5 transposase compare
CA264_04010 +0.3 1.6 YeeE/YedE family protein compare
CA264_13210 +0.3 1.1 hypothetical protein compare
CA264_15520 +0.3 1.7 hypothetical protein compare
CA264_00165 +0.3 1.3 macrolide ABC transporter ATP-binding protein compare
CA264_07295 +0.3 1.5 helix-turn-helix transcriptional regulator compare
CA264_19010 +0.3 2.7 SusD/RagB family nutrient-binding outer membrane lipoprotein compare
CA264_11970 +0.3 0.6 hypothetical protein compare
CA264_16215 +0.3 1.2 redoxin compare
CA264_20375 +0.3 0.9 hypothetical protein compare
CA264_06950 +0.3 1.2 glutathione peroxidase compare
CA264_03870 +0.3 1.0 transcription elongation factor GreA compare
CA264_07225 +0.3 1.9 hypothetical protein compare
CA264_16370 +0.3 1.7 gliding motility lipoprotein GldK compare
CA264_18940 +0.3 1.7 hypothetical protein compare
CA264_12965 +0.3 1.2 hypothetical protein compare
CA264_06005 +0.3 1.5 RES superfamily protein compare
CA264_21630 +0.3 1.5 hypothetical protein compare
CA264_12520 +0.3 1.4 sodium:proton exchanger compare
CA264_14415 +0.3 1.5 hypothetical protein compare
CA264_17640 +0.3 1.5 acyl-CoA dehydrogenase compare
CA264_20570 +0.3 0.6 inorganic pyrophosphatase compare
CA264_01015 +0.3 2.1 glycoside hydrolase compare
CA264_18350 +0.3 2.0 hypothetical protein compare
CA264_18265 +0.3 0.8 hypothetical protein compare
CA264_06530 +0.3 1.0 peptidase compare
CA264_08000 +0.3 1.1 hypothetical protein compare
CA264_21020 +0.3 1.9 conjugative transposon protein TraM compare
CA264_01990 +0.3 0.8 tRNA-Lys compare
CA264_14765 +0.3 1.9 hypothetical protein compare
CA264_20615 +0.3 1.5 N-acetylmuramoyl-L-alanine amidase compare
CA264_18980 +0.3 1.4 TraB/GumN family protein compare
CA264_00465 +0.3 1.4 DNA mismatch repair protein MutT compare
CA264_14015 +0.3 0.8 bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase compare
CA264_18655 +0.3 1.2 transcriptional repressor compare
CA264_12890 +0.3 1.0 iron-binding protein compare
CA264_03325 +0.3 1.3 hypothetical protein compare
CA264_20450 +0.3 2.1 hypothetical protein compare
CA264_04390 +0.3 1.9 ABC transporter permease compare
CA264_14365 +0.3 1.1 radical SAM protein compare
CA264_20985 +0.3 1.4 DUF4133 domain-containing protein compare
CA264_05660 +0.3 1.8 CoA-binding protein compare
CA264_01505 +0.3 0.7 hypothetical protein compare
CA264_11695 +0.3 0.9 cell filamentation protein Fic compare
CA264_02590 +0.3 1.2 ribosomal subunit interface protein compare
CA264_07235 +0.3 1.6 SIGNAL peptide protein compare
CA264_03490 +0.3 1.2 hypothetical protein compare
CA264_08140 +0.3 1.1 oxidoreductase compare
CA264_07940 +0.3 1.5 hypothetical protein compare
CA264_20560 +0.3 1.4 DNA repair ATPase compare
CA264_20095 +0.3 0.8 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB compare
CA264_06800 +0.3 1.7 hypothetical protein compare
CA264_05970 +0.3 1.7 hypothetical protein compare
CA264_04525 +0.3 1.7 DUF2279 domain-containing protein compare
CA264_07285 +0.3 2.2 alpha-amlyase compare
CA264_05800 +0.3 1.5 hypothetical protein compare


Specific Phenotypes

None in this experiment

For Pontibacter actiniarum KMM 6156, DSM 19842 in stress experiments

For stress Chloramphenicol across organisms