Experiment set3IT014 for Pseudomonas simiae WCS417

Compare to:

Putrescine Dihydrochloride carbon source

200 most important genes:

  gene name fitness t score description  
PS417_01575 -7.8 -6.6 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PS417_01855 -7.3 -4.7 phosphoribosyl-AMP cyclohydrolase compare
PS417_18560 -6.8 -9.5 N-(5'-phosphoribosyl)anthranilate isomerase compare
PS417_25720 -6.7 -7.4 anthranilate synthase component II compare
PS417_18585 -6.6 -6.4 3-isopropylmalate dehydrogenase compare
PS417_18600 -6.3 -5.3 isopropylmalate isomerase compare
PS417_00185 -6.2 -4.3 tryptophan synthase subunit beta compare
PS417_04415 -6.2 -8.4 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PS417_27140 -6.1 -5.9 Gamma-glutamyl-putrescine synthetase (EC 6.3.1.11) (from data) conserved
PS417_27040 -6.0 -3.4 3-phosphoglycerate dehydrogenase compare
PS417_07640 -6.0 -5.1 glyceraldehyde-3-phosphate dehydrogenase compare
PS417_25725 -5.9 -16.8 anthranilate synthase component I compare
PS417_26740 -5.9 -7.6 homoserine acetyltransferase compare
PS417_23545 -5.8 -4.0 gamma-glutamyl kinase compare
PS417_23800 -5.8 -10.4 ketol-acid reductoisomerase compare
PS417_02510 -5.7 -9.5 ATP phosphoribosyltransferase regulatory subunit compare
PS417_18595 -5.6 -4.4 3-isopropylmalate dehydratase compare
PS417_04420 -5.6 -12.7 histidinol dehydrogenase compare
PS417_01850 -5.4 -9.7 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PS417_23805 -5.4 -7.3 acetolactate synthase 3 regulatory subunit compare
PS417_20125 -5.3 -4.5 phosphoribosylglycinamide formyltransferase compare
PS417_16465 -5.1 -11.9 sirohydrochlorin ferrochelatase compare
PS417_27105 -5.1 -7.0 spermidine/putrescine ABC transporter permease conserved
PS417_27115 -5.0 -15.0 putrescine ABC transporter, ATPase component (from data) conserved
PS417_27795 -4.9 -2.0 orotate phosphoribosyltransferase compare
PS417_27110 -4.9 -7.5 spermidine/putrescine ABC transporter permease conserved
PS417_23810 -4.9 -10.9 acetolactate synthase 3 catalytic subunit compare
PS417_27135 -4.7 -1.9 glutamine synthetase compare
PS417_20985 -4.7 -5.5 porin compare
PS417_23995 -4.6 -1.9 preprotein translocase subunit SecG compare
PS417_24745 -4.3 -5.8 gamma-glutamyl phosphate reductase compare
PS417_12290 -4.2 -11.8 sulfite reductase compare
PS417_18530 -4.2 -5.3 O-succinylhomoserine sulfhydrylase compare
PS417_27125 -4.1 -11.5 spermidine/putrescine ABC transporter substrate-binding protein conserved
PS417_27195 -4.1 -2.2 N-acetylglutamate synthase compare
PS417_25715 -4.0 -5.7 anthranilate phosphoribosyltransferase compare
PS417_25710 -4.0 -2.3 indole-3-glycerol-phosphate synthase compare
PS417_05595 -4.0 -8.1 ornithine carbamoyltransferase compare
PS417_00180 -4.0 -4.5 tryptophan synthase subunit alpha compare
PS417_01580 -3.9 -2.0 imidazole glycerol phosphate synthase compare
PS417_27745 -3.9 -6.0 gamma-glutamyl-gamma-aminobutyraldehyde dehydrogenase (EC 1.2.1.99); 4-guanidinobutyraldehyde dehydrogenase (EC 1.2.1.54) (from data) conserved
PS417_27130 -3.8 -13.3 Gamma-aminobutyrate:alpha-ketoglutarate aminotransferase (EC 2.6.1.19) (from data) conserved
PS417_26745 -3.7 -3.3 methionine biosynthesis protein MetW compare
PS417_23110 -3.7 -7.2 2-isopropylmalate synthase compare
PS417_16570 -3.7 -14.3 isocitrate lyase compare
PS417_08685 -3.7 -1.6 flagellar hook-length control protein FliK compare
PS417_02415 -3.7 -6.4 phosphoserine phosphatase compare
PS417_01565 -3.6 -4.2 imidazole glycerol phosphate synthase compare
PS417_26730 -3.5 -2.0 pyrroline-5-carboxylate reductase compare
PS417_20160 -3.5 -5.8 cysteine synthase compare
PS417_21035 -3.4 -11.5 multidrug transporter compare
PS417_26985 -3.0 -3.5 phosphoenolpyruvate-protein phosphotransferase compare
PS417_08230 -3.0 -4.0 lipopolysaccharide biosynthesis protein RfbH compare
PS417_04180 -2.9 -5.0 GntR family transcriptional regulator compare
PS417_27120 -2.8 -4.4 ABC transporter substrate-binding protein compare
PS417_08125 -2.8 -2.2 prephenate dehydratase compare
PS417_26890 -2.8 -4.1 dihydroxy-acid dehydratase compare
PS417_06375 -2.8 -1.9 deoxycytidine triphosphate deaminase compare
PS417_26040 -2.7 -2.9 malate synthase compare
PS417_27875 -2.7 -11.7 histidine kinase compare
PS417_26995 -2.7 -8.4 phosphoserine phosphatase compare
PS417_01560 -2.7 -3.4 imidazoleglycerol-phosphate dehydratase compare
PS417_24155 -2.6 -3.7 ATP-binding protein compare
PS417_24835 -2.6 -8.1 hypothetical protein compare
PS417_17480 -2.5 -9.2 branched-chain amino acid ABC transporter substrate-binding protein compare
PS417_12855 -2.4 -6.6 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_08195 -2.4 -10.7 hypothetical protein compare
PS417_28050 -2.4 -3.4 hypothetical protein compare
PS417_08155 -2.3 -2.9 integration host factor subunit beta compare
PS417_01710 -2.3 -5.9 histidine utilization repressor compare
PS417_01605 -2.2 -2.6 phosphoglycerate mutase compare
PS417_17485 -2.2 -7.7 membrane protein compare
PS417_02485 -2.1 -5.5 tRNA delta(2)-isopentenylpyrophosphate transferase compare
PS417_17455 -2.1 -4.0 cytochrome C compare
PS417_08200 -2.1 -5.5 hypothetical protein compare
PS417_08580 -2.1 -6.6 histidine kinase compare
PS417_21750 -2.1 -14.8 acetyl-CoA synthetase compare
PS417_17495 -2.0 -6.4 multidrug ABC transporter permease conserved
PS417_25940 -2.0 -8.0 pyrroloquinoline quinone biosynthesis protein PqqE compare
PS417_23770 -1.9 -3.9 exodeoxyribonuclease V subunit alpha compare
PS417_17435 -1.9 -9.9 dehydrogenase compare
PS417_03925 -1.9 -7.8 nicotinate-nucleotide pyrophosphorylase compare
PS417_21210 -1.9 -1.3 amidotransferase compare
PS417_22385 -1.8 -7.8 quinolinate synthase A compare
PS417_17450 -1.8 -6.0 amino acid ABC transporter substrate-binding protein conserved
PS417_17420 -1.7 -7.1 ethanol oxidation regulatory protein ercA (from data) conserved
PS417_25930 -1.7 -5.8 pyrroloquinoline quinone biosynthesis protein PqqC compare
PS417_20665 -1.6 -7.8 hypothetical protein compare
PS417_21125 -1.6 -7.9 phosphoadenosine phosphosulfate reductase compare
PS417_22570 -1.6 -1.6 H-NS histone compare
PS417_01210 -1.6 -8.8 hypothetical protein compare
PS417_25920 -1.5 -6.0 pyrroloquinoline quinone biosynthesis protein PqqF compare
PS417_21030 -1.5 -8.6 GntR family transcriptional regulator compare
PS417_08225 -1.5 -4.9 acetolactate synthase compare
PS417_12310 -1.5 -9.9 methionine synthase compare
PS417_02805 -1.5 -2.8 urease subunit gamma compare
PS417_27705 -1.4 -2.1 amino acid dehydrogenase compare
PS417_16510 -1.4 -3.2 Clp protease ClpX compare
PS417_23950 -1.4 -2.8 polynucleotide phosphorylase/polyadenylase compare
PS417_26990 -1.4 -1.9 RNA pyrophosphohydrolase compare
PS417_27710 -1.4 -5.7 AsnC family transcriptional regulator conserved
PS417_22445 -1.3 -3.5 ATP-dependent DNA helicase RuvB compare
PS417_08205 -1.3 -4.3 acetyltransferase compare
PS417_11845 -1.3 -4.7 RpiR family transcriptional regulator compare
PS417_08545 -1.3 -3.0 aromatic ring-opening dioxygenase LigB compare
PS417_20610 -1.3 -1.6 hypothetical protein compare
PS417_02005 -1.3 -8.4 glutamate synthase compare
PS417_10995 -1.2 -2.7 GntR family transcriptional regulator compare
PS417_28515 -1.2 -2.3 16S rRNA methyltransferase compare
PS417_08990 -1.2 -2.7 ABC transporter substrate-binding protein compare
PS417_21705 -1.2 -4.2 arginine N-succinyltransferase compare
PS417_23390 -1.2 -5.1 ubiquinol oxidase subunit II compare
PS417_02555 -1.2 -9.5 exoribonuclease R compare
PS417_06530 -1.2 -3.5 membrane protein compare
PS417_27010 -1.2 -5.6 threonine dehydratase compare
PS417_27800 -1.2 -6.1 exodeoxyribonuclease III compare
PS417_20620 -1.2 -5.4 glycosyl transferase family 2 compare
PS417_17490 -1.1 -1.4 ABC transporter ATP-binding protein compare
PS417_23380 -1.1 -2.3 cytochrome o ubiquinol oxidase subunit III compare
PS417_17415 -1.1 -2.7 histidine kinase compare
PS417_24675 -1.1 -2.2 lipoyl synthase compare
PS417_06895 -1.1 -3.2 DNA-binding protein compare
PS417_10535 -1.1 -4.7 hypothetical protein compare
PS417_07635 -1.1 -8.2 transcription-repair coupling factor compare
PS417_04595 -1.1 -3.1 cell division protein MraZ compare
PS417_22375 -1.1 -1.2 cold-shock protein compare
PS417_08220 -1.0 -1.0 epimerase compare
PS417_02895 -1.0 -2.0 precorrin-6Y C5,15-methyltransferase compare
PS417_20140 -1.0 -2.1 nucleoprotein/polynucleotide-associated enzyme compare
PS417_19015 -1.0 -3.2 LysR family transcriptional regulator compare
PS417_09210 -1.0 -1.8 TetR family transcriptional regulator compare
PS417_23375 -1.0 -1.7 cytochrome C oxidase compare
PS417_05905 -1.0 -1.7 hypothetical protein compare
PS417_17505 -1.0 -3.5 LuxR family transcriptional regulator compare
PS417_26510 -1.0 -6.9 5,10-methylenetetrahydrofolate reductase compare
PS417_02255 -1.0 -2.9 lipopolysaccharide kinase compare
PS417_02370 -1.0 -2.0 ADP-ribose pyrophosphatase compare
PS417_03560 -1.0 -2.0 GTP-binding protein compare
PS417_17945 -1.0 -1.3 hypothetical protein compare
PS417_08245 -1.0 -1.1 CDP-6-deoxy-L-threo-D-glycero-4-hexulose-3- dehydrase reductase compare
PS417_15650 -1.0 -1.0 glutamine amidotransferase compare
PS417_27305 -0.9 -4.9 5-formyltetrahydrofolate cyclo-ligase compare
PS417_05540 -0.9 -3.2 histidine kinase compare
PS417_18425 -0.9 -1.0 sporulation protein compare
PS417_22115 -0.9 -2.3 transcriptional regulator compare
PS417_25390 -0.9 -3.5 MFS transporter compare
PS417_19965 -0.9 -6.6 histidine kinase compare
PS417_21480 -0.9 -2.0 23S rRNA pseudouridylate synthase compare
PS417_00195 -0.9 -1.9 hypothetical protein compare
PS417_16990 -0.9 -4.8 acyl-CoA dehydrogenase compare
PS417_16515 -0.9 -1.7 Clp protease ClpS compare
PS417_00550 -0.9 -1.1 hypothetical protein compare
PS417_06685 -0.9 -1.1 beta-ketoadipyl CoA thiolase compare
PS417_02225 -0.9 -1.0 bifunctional glutamine-synthetase adenylyltransferase/deadenyltransferase compare
PS417_17515 -0.8 -4.1 GfdT protein compare
PS417_20645 -0.8 -5.7 membrane protein compare
PS417_07170 -0.8 -3.0 hypothetical protein compare
PS417_14940 -0.8 -1.9 LysR family transcriptional regulator compare
PS417_18505 -0.8 -5.9 gamma-glutamylputrescine oxidoreductase compare
PS417_06200 -0.8 -3.9 protein-PII uridylyltransferase compare
PS417_06165 -0.8 -2.8 thiamine biosynthesis protein ThiF compare
PS417_06095 -0.8 -1.6 energy transducer TonB compare
PS417_13510 -0.8 -1.2 polyketide cyclase compare
PS417_09010 -0.8 -2.2 phosphohistidine phosphatase compare
PS417_15725 -0.8 -2.5 nitrate/nitrite transporter NarK compare
PS417_28510 -0.8 -3.3 chromosome partitioning protein compare
PS417_26900 -0.8 -1.6 L-cystine transporter tcyP compare
PS417_27870 -0.8 -2.7 ATP-dependent DNA helicase RecG compare
PS417_25270 -0.8 -2.7 NrdR family transcriptional regulator compare
PS417_00960 -0.8 -1.6 transcriptional regulator compare
PS417_27865 -0.8 -2.3 LysR family transcriptional regulator compare
PS417_07245 -0.8 -1.5 2-deoxy-D-ribonate 3-dehydrogenase (from data) compare
PS417_02000 -0.8 -5.4 glutamate synthase compare
PS417_21625 -0.8 -0.9 DNA-binding protein compare
PS417_10715 -0.8 -2.1 Cro/Cl family transcriptional regulator compare
PS417_08380 -0.8 -3.4 ABC transporter ATP-binding protein compare
PS417_23900 -0.7 -4.8 poly(A) polymerase compare
PS417_08410 -0.7 -2.4 hypothetical protein compare
PS417_23315 -0.7 -0.9 transcriptional regulator compare
PS417_17240 -0.7 -2.3 trigger factor compare
PS417_15470 -0.7 -2.7 saccharopine dehydrogenase compare
PS417_08945 -0.7 -4.7 heat shock protein 90 compare
PS417_13140 -0.7 -1.8 oxidoreductase compare
PS417_27035 -0.7 -3.7 FAD-linked oxidase compare
PS417_00295 -0.7 -4.4 hypothetical protein compare
PS417_21000 -0.7 -1.1 CrfX protein compare
PS417_20055 -0.7 -2.1 cob(II)yrinic acid a,c-diamide reductase compare
PS417_01195 -0.7 -1.7 RNA-binding protein S4 compare
PS417_25815 -0.7 -2.0 magnesium transporter ApaG compare
PS417_27290 -0.7 -1.6 hypothetical protein compare
PS417_27585 -0.7 -2.1 diaminopimelate epimerase compare
PS417_08320 -0.7 -1.2 metal-chelation protein CHAD compare
PS417_19350 -0.7 -3.0 GTP cyclohydrolase compare
PS417_03260 -0.7 -2.0 5S ribosomal RNA compare
PS417_19355 -0.7 -2.1 glutaredoxin compare
PS417_15915 -0.7 -1.3 hypothetical protein compare
PS417_08540 -0.7 -2.2 RNA helicase compare
PS417_20660 -0.7 -4.2 hypothetical protein compare
PS417_01570 -0.7 -0.3 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase compare
PS417_23775 -0.7 -1.5 exodeoxyribonuclease V subunit beta compare


Specific Phenotypes

For 19 genes in this experiment

For carbon source Putrescine Dihydrochloride in Pseudomonas simiae WCS417

For carbon source Putrescine Dihydrochloride across organisms