Experiment set3IT013 for Agrobacterium fabrum C58

Compare to:

Choline chloride nitrogen source

200 most important genes:

  gene name fitness t score description  
Atu0678 -4.5 -9.2 histidyl-tRNA synthetase compare
Atu0030 -4.3 -2.6 phosphocarrier protein HPr compare
Atu3469 -4.2 -4.0 phosphoglyceromutase compare
Atu0043 -4.1 -4.8 imidazoleglycerol-phosphate dehydratase compare
Atu2790 -4.0 -3.8 3-isopropylmalate dehydratase, small subunit compare
Atu1687 -3.8 -11.0 anthranilate phosphoribosyltransferase compare
Atu2289 -3.8 -19.4 anthranilate synthase component I and II compare
Atu0099 -3.8 -13.9 prephenate dehydratase compare
Atu1688 -3.8 -7.8 indole-3-glycerol-phosphate synthase compare
Atu0537 -3.6 -10.3 histidinol dehydrogenase compare
Atu0035 -3.6 -15.2 phosphoenolpyruvate carboxykinase compare
Atu0679 -3.6 -7.4 ATP phosphoribosyltransferase compare
Atu1750 -3.5 -9.6 phosphoribosyl c-AMP cyclohydrolase compare
Atu1446 -3.4 -4.2 two component response regulator compare
Atu1632 -3.4 -20.3 dimethylglycine dehydrogenase compare
Atu4505 -3.4 -11.0 LacI family transcriptional regulator compare
Atu0726 -3.4 -13.7 ring hydroxylating dioxygenase, alpha-subunit conserved
Atu2709 -3.3 -20.3 3-isopropylmalate dehydratase, large subunit compare
Atu1030 -3.3 -2.6 GTP pyrophosphohydrolase/synthetase, RelA/SpoT family compare
Atu0039 -3.2 -3.8 imidazoleglycerol-phosphate synthase cyclase compare
Atu3740 -3.2 -13.2 fructose bisphosphate aldolase compare
Atu6098 -3.2 -1.3 transcriptional regulator, HTH family compare
Atu0727 -3.1 -13.4 ferredoxin I conserved
Atu3754 -3.1 -7.3 phosphoribosylaminoimidazole carboxylase catalytic subunit compare
Atu1620 -3.1 -12.2 triosephosphate isomerase compare
Atu0346 -3.1 -6.4 uridylyltransferase/uridylyl-removing enzyme UTase compare
Atu2718 -3.0 -10.5 homoserine O-succinyltransferase compare
Atu3885 -2.9 -11.5 inositol monophosphatase compare
Atu2650 -2.9 -13.6 glycerol-3-phosphate dehydrogenase compare
Atu2281 -2.9 -12.7 ABC transporter, substrate binding protein (proline/glycine betaine) compare
Atu0040 -2.9 -1.7 phosphoribosylformino-5-aminoimidazole carboxamide ribotide isomerase compare
Atu1767 -2.9 -13.5 transcriptional regulator, AraC family conserved
Atu4317 -2.9 -6.8 TetR family transcriptional regulator compare
Atu2279 -2.9 -9.3 ABC transporter, nucleotide binding/ATPase protein (proline/glycine betaine) compare
Atu0829 -2.9 -16.9 betaine aldehyde dehydrogenase compare
Atu2036 -2.8 -15.6 acetolactate synthase III, large subunit compare
Atu2264 -2.8 -15.2 2-isopropylmalate synthase compare
Atu0432 -2.7 -8.7 O-succinylhomoserine sulfhydrylase compare
Atu1445 -2.7 -7.8 two component sensor kinase compare
Atu2280 -2.7 -12.6 ABC transporter, membrane spanning protein (proline/glycine betaine) compare
Atu2791 -2.7 -8.6 3-isopropylmalate dehydrogenase compare
Atu0830 -2.7 -13.0 choline dehydrogenase conserved
Atu0017 -2.7 -3.5 N-(5-phosphoribosyl) anthranilate isomerase compare
Atu1205 -2.7 -13.1 threonine dehydratase compare
Atu3755 -2.6 -7.8 phosphoribosylaminoimidazole carboxylase ATPase subunit compare
Atu0486 -2.6 -5.1 dihydroorotate dehydrogenase compare
Atu3739 -2.6 -4.8 phosphoglycerate kinase compare
Atu1850 -2.6 -5.2 phosphoribosylformylglycinamidine synthetase II compare
Atu4773 -2.6 -3.6 two component response regulator compare
Atu1141 -2.5 -8.9 Phosphoribosylglycinamide synthetase compare
Atu0400 -2.5 -5.6 orotate phosphoribosyltransferase compare
Atu1844 -2.4 -4.2 Phosphoribosylformylglycinamidine synthetase compare
Atu1308 -2.4 -6.3 aspartate carbamoyl transferase catalytic subunit compare
Atu1456 -2.4 -11.5 sulfite reductase (NADPH) hemoprotein beta-component compare
Atu1075 -2.3 -8.5 amidophosphoribosyltransferase compare
Atu0041 -2.3 -3.8 glutamine amidotransferase compare
Atu2747 -2.3 -12.0 hypothetical protein compare
Atu0029 -2.2 -6.1 S-adenosylhomocysteine hydrolase compare
Atu0298 -2.2 -9.4 orotidine 5 compare
Atu0332 -2.2 -10.6 RNA polymerase sigma-54 factor compare
Atu1588 -2.2 -10.9 homoserine dehydrogenase compare
Atu0828 -2.1 -7.3 transcriptional regulator BetI compare
Atu1307 -2.1 -4.6 dihydroorotase compare
Atu1454 -2.0 -7.1 siroheme synthase compare
Atu1845 -2.0 -5.4 phosphoribosylformylglycinamidine synthase I compare
Atu2015 -2.0 -12.3 aminotransferase compare
Atu0399 -1.9 -5.3 dihydroorotase compare
Atu1759 -1.9 -8.5 L-serine dehydratase compare
Atu0038 -1.9 -4.7 phosphoribosyl-ATP pyrophosphohydrolase compare
Atu2115 -1.8 -9.0 pyrophosphate--fructose-6-phosphate 1-phosphotransferase compare
Atu1455 -1.8 -4.1 hypothetical protein compare
Atu0647 -1.8 -7.8 phosphoribosylamine--glycine ligase compare
Atu2155 -1.8 -13.5 methionine synthase compare
Atu2200 -1.8 -3.6 cold shock protein compare
Atu0141 -1.8 -2.8 cytochrome O ubiquinol oxidase subunit I compare
Atu4173 -1.7 -3.9 phosphoenolpyruvate-protein phosphotransferase compare
Atu3731 -1.7 -7.9 5-formyltetrahydrofolate cyclo-ligase compare
Atu4897 -1.7 -2.2 hypothetical protein compare
Atu2207 -1.7 -2.8 two component sensor kinase compare
Atu3012 -1.7 -2.8 hypothetical protein compare
Atu1140 -1.6 -3.9 phosphoribosyalaminoimidazole-succinocarboxamide synthase compare
Atu0142 -1.6 -4.8 cytochrome o ubiquinol oxidase subunit II compare
Atu1457 -1.5 -2.4 hypothetical protein compare
Atu1686 -1.5 -11.1 peptidyl-prolyl cis-trans isomerse D compare
Atu0190 -1.5 -7.8 ABC transporter, nucleotide binding/ATPase protein (peptide) compare
Atu3783 -1.5 -10.5 glutamate synthase subunit beta compare
Atu3298 -1.4 -9.5 C4-dicarboxylate transporter DctA compare
Atu2548 -1.4 -9.8 phosphoribosylaminoimidazole-succinocarboxamide synthase compare
Atu1677 -1.4 -3.2 queuine tRNA-ribosyltransferase compare
Atu4166 -1.4 -3.0 UDP-glucose 4-epimerase compare
Atu0876 -1.4 -1.9 superoxide dismutase compare
Atu3296 -1.3 -8.6 two component response regulator for C4-dicarboxylate transport compare
Atu0188 -1.3 -3.1 ABC transporter, membrane spanning protein (peptide) compare
Atu5125 -1.3 -4.0 GntR family transcriptional regulator compare
Atu1444 -1.3 -4.8 nitrogen regulation protein compare
Atu3297 -1.3 -9.1 two component sensor kinase for C4-dicarboxylate transport compare
Atu4711 -1.3 -5.2 two component sensor kinase compare
Atu0690 -1.2 -2.5 hypothetical protein compare
Atu1774 -1.2 -6.8 ABC transporter, substrate binding protein (peptide) compare
Atu3784 -1.2 -10.5 glutamate synthase large subunit compare
Atu4232 -1.2 -4.6 GntR family transcriptional regulator compare
Atu1163 -1.2 -2.3 exopolysaccharide II synthesis transcriptional activator ExpG compare
Atu1589 -1.2 -4.0 aminotransferase, class I compare
Atu0953 -1.1 -1.3 hypothetical protein compare
Atu3075 -1.1 -7.5 TetR family transcriptional regulator compare
Atu2606 -1.1 -6.1 transcriptional regulator, GntR family compare
Atu0354 -1.1 -2.4 ferric uptake regulator compare
Atu5430 -1.1 -1.3 hypothetical protein compare
Atu3009 -1.1 -1.1 exopolysaccharide production protein compare
Atu0189 -1.1 -3.1 ABC transporter, membrane spanning protein (peptide) compare
Atu3908 -1.1 -8.2 GntR family transcriptional regulator compare
Atu2439 -1.1 -1.9 hypothetical protein compare
Atu0837 -1.1 -3.9 transcriptional regulator, MarR family compare
Atu1439 -1.0 -2.2 hypothetical protein compare
Atu4576 -1.0 -5.8 ROK family transcriptional regulator compare
Atu4217 -1.0 -2.2 TetR family transcriptional regulator compare
Atu3482 -1.0 -4.5 pantoate--beta-alanine ligase compare
Atu1685 -0.9 -1.1 hypothetical protein compare
Atu0846 -0.9 -2.9 transcriptional regulator, MarR family compare
Atu0086 -0.9 -1.3 ribosome-binding factor A compare
Atu3913 -0.9 -4.6 biotin carboxylase compare
Atu5483 -0.9 -3.7 GntR family transcriptional regulator compare
Atu4686 -0.9 -2.6 hypothetical protein compare
Atu3264 -0.9 -3.0 IclR family transcriptional regulator compare
Atu1793 -0.9 -5.3 phosphatidylcholine synthase compare
Atu3697 -0.9 -3.1 ATP-dependent protease LA 2 compare
Atu4045 -0.9 -6.6 glycine betaine ABC transporter permease compare
Atu0291 -0.9 -5.3 hypothetical protein compare
Atu0328 -0.9 -4.5 heat-inducible transcription repressor compare
Atu2376 -0.9 -0.6 hypothetical protein compare
Atu0845 -0.9 -4.0 hypothetical protein compare
Atu3496 -0.8 -3.2 hypothetical protein compare
Atu3707 -0.8 -1.6 phosphoserine aminotransferase compare
Atu0031 -0.8 -1.3 PTS system, IIA component compare
Atu8118 -0.8 -5.1 putative universal stress protein compare
Atu1327 -0.8 -2.6 NADH-ubiquinone oxidoreductase compare
Atu4044 -0.8 -4.8 glycine betaine ABC transporter ATPase compare
Atu3912 -0.8 -4.6 hypothetical protein compare
Atu3763 -0.8 -1.1 hypothetical protein compare
Atu3668 -0.8 -2.6 siderophore biosynthesis protein compare
Atu0784 -0.8 -2.4 hypothetical protein compare
Atu0769 -0.8 -1.5 protoheme IX farnesyltransferase compare
Atu2678 -0.8 -4.6 2'-5' RNA ligase compare
Atu5088 -0.8 -1.5 hypothetical protein compare
Atu2123 -0.8 -2.9 methylenetetrahydrofolate reductase compare
Atu0641 -0.8 -2.6 hypothetical protein compare
Atu3353 -0.8 -4.6 mannose-1-phosphate guanylyltransferase compare
Atu1546 -0.8 -2.6 transcriptional regulator, MerR family compare
Atu2442 -0.8 -1.2 hypothetical protein compare
Atu4161 -0.8 -0.8 hypothetical protein compare
Atu0689 -0.7 -5.0 ribosomal large subunit pseudouridine synthase B compare
Atu4176 -0.7 -3.5 hypothetical protein compare
Atu2416 -0.7 -5.4 glutamine synthetase compare
Atu0977 -0.7 -2.2 serine protease DO-like protease compare
Atu5160 -0.7 -1.6 transcriptional regulator protein compare
Atu0533 -0.7 -2.3 putative inhibitor of septum formation compare
Atu2183 -0.7 -3.4 lipopolysaccharide core biosynthesis mannosyltransferase compare
Atu3483 -0.7 -3.4 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
Atu3120 -0.7 -1.2 hypothetical protein compare
Atu4046 -0.7 -4.3 glycine betaine ABC transporter substrate-binding protein compare
Atu4617 -0.7 -5.5 dTDP-D-glucose-4,6-dehydratase compare
Atu0026 -0.7 -0.9 hypothetical protein compare
Atu8115 -0.7 -3.1 Hypothetical Protein compare
Atu6114 -0.7 -1.2 hypothetical protein compare
Atu2433 -0.6 -1.1 hypothetical protein compare
Atu4873 -0.6 -3.9 TetR family transcriptional regulator compare
Atu2209 -0.6 -1.5 pyrroline-5-carboxylate reductase compare
Atu2125 -0.6 -1.2 ABC transporter, nucleotide binding/ATPase protein compare
Atu2450 -0.6 -2.3 hypothetical protein compare
Atu2368 -0.6 -1.1 hypothetical protein compare
Atu8156 -0.6 -2.1 hypothetical protein compare
Atu0993 -0.6 -3.2 transcriptional regulator, TetR family compare
Atu2124 -0.6 -2.5 transcriptional regulator, ArsR family compare
Atu1765 -0.6 -3.6 transcriptional regulator, LysR family compare
Atu2640 -0.6 -2.9 hypothetical protein compare
Atu2163 -0.6 -1.2 hypothetical protein compare
Atu4674 -0.6 -3.9 GntR family transcriptional regulator compare
Atu0107 -0.6 -1.7 hypothetical protein compare
Atu8159 -0.6 -1.8 hypothetical protein compare
Atu1258 -0.6 -2.6 ATP-dependent Clp protease, proteolytic subunit compare
Atu5406 -0.6 -3.4 GntR family transcriptional regulator compare
Atu2113 -0.6 -1.6 N-acetylmuramoyl-L-alanine amidase compare
Atu0302 -0.6 -3.1 tetrapyrrole methylase family protein compare
Atu3910 -0.6 -2.8 LamB/YcsF family protein compare
Atu1705 -0.6 -3.1 SEC-independent protein translocase protein compare
Atu1466 -0.6 -1.2 hypothetical protein compare
Atu0577 -0.6 -2.1 FLAF protein compare
Atu0660 -0.6 -3.1 hydrolase compare
Atu4309 -0.6 -3.2 AraC family transcriptional regulator compare
Atu1803 -0.6 -3.1 cold shock protein compare
Atu3572 -0.6 -3.4 transcriptional regulator compare
Atu4310 -0.6 -4.5 sarcosine oxidase beta subunit compare
Atu2796 -0.6 -2.8 precorrin-4 C11-methyltransferase compare
Atu0421 -0.6 -0.9 ABC transporter, membrane spanning protein compare
Atu1904 -0.5 -2.5 transcriptional regulator compare
Atu3311 -0.5 -4.3 phosphomannose isomerase compare
Atu0135 -0.5 -1.1 uracil phosphoribosyltransferase compare
Atu2800 -0.5 -2.5 precorrin-3B C17-methyltransferase compare
Atu5504 -0.5 -2.3 hypothetical protein compare
Atu1503 -0.5 -0.8 hypothetical protein compare


Specific Phenotypes

For 17 genes in this experiment

For nitrogen source Choline chloride in Agrobacterium fabrum C58

For nitrogen source Choline chloride across organisms