Experiment set3IT012 for Agrobacterium fabrum C58

Compare to:

Choline chloride nitrogen source

200 most important genes:

  gene name fitness t score description  
Atu0030 -5.7 -2.5 phosphocarrier protein HPr compare
Atu1750 -5.2 -6.7 phosphoribosyl c-AMP cyclohydrolase compare
Atu0043 -4.5 -4.4 imidazoleglycerol-phosphate dehydratase compare
Atu0537 -4.2 -9.3 histidinol dehydrogenase compare
Atu0679 -4.2 -5.7 ATP phosphoribosyltransferase compare
Atu2289 -4.0 -21.0 anthranilate synthase component I and II compare
Atu0099 -3.9 -11.0 prephenate dehydratase compare
Atu1687 -3.9 -12.2 anthranilate phosphoribosyltransferase compare
Atu0035 -3.8 -12.5 phosphoenolpyruvate carboxykinase compare
Atu0678 -3.7 -7.6 histidyl-tRNA synthetase compare
Atu1688 -3.7 -9.8 indole-3-glycerol-phosphate synthase compare
Atu3739 -3.7 -3.9 phosphoglycerate kinase compare
Atu0400 -3.6 -7.7 orotate phosphoribosyltransferase compare
Atu2650 -3.4 -12.8 glycerol-3-phosphate dehydrogenase compare
Atu2709 -3.3 -17.0 3-isopropylmalate dehydratase, large subunit compare
Atu2791 -3.3 -9.0 3-isopropylmalate dehydrogenase compare
Atu0017 -3.3 -4.9 N-(5-phosphoribosyl) anthranilate isomerase compare
Atu3469 -3.3 -4.4 phosphoglyceromutase compare
Atu0041 -3.2 -3.7 glutamine amidotransferase compare
Atu0727 -3.2 -13.3 ferredoxin I conserved
Atu0486 -3.2 -5.5 dihydroorotate dehydrogenase compare
Atu2264 -3.1 -13.7 2-isopropylmalate synthase compare
Atu3740 -3.1 -11.6 fructose bisphosphate aldolase compare
Atu0726 -3.1 -14.7 ring hydroxylating dioxygenase, alpha-subunit conserved
Atu4505 -3.0 -13.0 LacI family transcriptional regulator compare
Atu1632 -3.0 -18.7 dimethylglycine dehydrogenase compare
Atu2281 -3.0 -10.9 ABC transporter, substrate binding protein (proline/glycine betaine) compare
Atu0830 -2.9 -13.9 choline dehydrogenase conserved
Atu1767 -2.9 -10.5 transcriptional regulator, AraC family conserved
Atu0038 -2.9 -3.3 phosphoribosyl-ATP pyrophosphohydrolase compare
Atu2279 -2.9 -8.7 ABC transporter, nucleotide binding/ATPase protein (proline/glycine betaine) compare
Atu2790 -2.9 -4.1 3-isopropylmalate dehydratase, small subunit compare
Atu0432 -2.9 -11.3 O-succinylhomoserine sulfhydrylase compare
Atu4317 -2.8 -4.8 TetR family transcriptional regulator compare
Atu0828 -2.8 -10.6 transcriptional regulator BetI compare
Atu2036 -2.8 -16.0 acetolactate synthase III, large subunit compare
Atu0829 -2.8 -13.3 betaine aldehyde dehydrogenase compare
Atu3754 -2.7 -10.9 phosphoribosylaminoimidazole carboxylase catalytic subunit compare
Atu1030 -2.7 -2.4 GTP pyrophosphohydrolase/synthetase, RelA/SpoT family compare
Atu1850 -2.7 -4.6 phosphoribosylformylglycinamidine synthetase II compare
Atu2280 -2.7 -10.7 ABC transporter, membrane spanning protein (proline/glycine betaine) compare
Atu3885 -2.7 -11.9 inositol monophosphatase compare
Atu0399 -2.7 -8.0 dihydroorotase compare
Atu0039 -2.6 -3.4 imidazoleglycerol-phosphate synthase cyclase compare
Atu1446 -2.6 -4.0 two component response regulator compare
Atu1140 -2.6 -6.3 phosphoribosyalaminoimidazole-succinocarboxamide synthase compare
Atu2718 -2.6 -8.0 homoserine O-succinyltransferase compare
Atu1620 -2.6 -13.1 triosephosphate isomerase compare
Atu4773 -2.5 -3.3 two component response regulator compare
Atu0298 -2.5 -8.0 orotidine 5 compare
Atu0346 -2.5 -3.2 uridylyltransferase/uridylyl-removing enzyme UTase compare
Atu1307 -2.4 -6.1 dihydroorotase compare
Atu1205 -2.4 -13.1 threonine dehydratase compare
Atu0647 -2.4 -7.6 phosphoribosylamine--glycine ligase compare
Atu0332 -2.3 -9.5 RNA polymerase sigma-54 factor compare
Atu4166 -2.3 -4.5 UDP-glucose 4-epimerase compare
Atu1844 -2.3 -4.9 Phosphoribosylformylglycinamidine synthetase compare
Atu0769 -2.2 -2.4 protoheme IX farnesyltransferase compare
Atu3755 -2.2 -6.2 phosphoribosylaminoimidazole carboxylase ATPase subunit compare
Atu1308 -2.2 -6.6 aspartate carbamoyl transferase catalytic subunit compare
Atu1141 -2.1 -5.9 Phosphoribosylglycinamide synthetase compare
Atu1456 -2.1 -10.0 sulfite reductase (NADPH) hemoprotein beta-component compare
Atu1588 -2.1 -8.6 homoserine dehydrogenase compare
Atu2200 -2.1 -4.7 cold shock protein compare
Atu1845 -2.1 -5.5 phosphoribosylformylglycinamidine synthase I compare
Atu1444 -2.1 -7.9 nitrogen regulation protein compare
Atu1075 -2.1 -7.9 amidophosphoribosyltransferase compare
Atu0040 -2.0 -1.7 phosphoribosylformino-5-aminoimidazole carboxamide ribotide isomerase compare
Atu1759 -2.0 -11.0 L-serine dehydratase compare
Atu1445 -1.9 -5.9 two component sensor kinase compare
Atu2115 -1.9 -10.4 pyrophosphate--fructose-6-phosphate 1-phosphotransferase compare
Atu0188 -1.9 -4.3 ABC transporter, membrane spanning protein (peptide) compare
Atu2015 -1.9 -10.4 aminotransferase compare
Atu1454 -1.8 -9.2 siroheme synthase compare
Atu2747 -1.8 -10.9 hypothetical protein compare
Atu2155 -1.7 -12.2 methionine synthase compare
Atu3763 -1.7 -2.7 hypothetical protein compare
Atu3783 -1.5 -10.9 glutamate synthase subunit beta compare
Atu4711 -1.5 -6.7 two component sensor kinase compare
Atu2548 -1.5 -9.7 phosphoribosylaminoimidazole-succinocarboxamide synthase compare
Atu1455 -1.5 -3.0 hypothetical protein compare
Atu0029 -1.5 -4.9 S-adenosylhomocysteine hydrolase compare
Atu0031 -1.5 -1.9 PTS system, IIA component compare
Atu1686 -1.5 -9.6 peptidyl-prolyl cis-trans isomerse D compare
Atu5125 -1.4 -3.0 GntR family transcriptional regulator compare
Atu3296 -1.4 -8.5 two component response regulator for C4-dicarboxylate transport compare
Atu2123 -1.4 -4.5 methylenetetrahydrofolate reductase compare
Atu0354 -1.4 -2.4 ferric uptake regulator compare
Atu2376 -1.4 -2.1 hypothetical protein compare
Atu3298 -1.4 -9.4 C4-dicarboxylate transporter DctA compare
Atu4173 -1.4 -3.2 phosphoenolpyruvate-protein phosphotransferase compare
Atu1457 -1.4 -2.2 hypothetical protein compare
Atu3784 -1.3 -10.9 glutamate synthase large subunit compare
Atu3908 -1.3 -8.8 GntR family transcriptional regulator compare
Atu3731 -1.3 -7.5 5-formyltetrahydrofolate cyclo-ligase compare
Atu8118 -1.3 -6.4 putative universal stress protein compare
Atu0142 -1.3 -2.7 cytochrome o ubiquinol oxidase subunit II compare
Atu2207 -1.2 -1.9 two component sensor kinase compare
Atu0413 -1.2 -2.3 stress induced protein compare
Atu0690 -1.2 -3.4 hypothetical protein compare
Atu5430 -1.2 -1.2 hypothetical protein compare
Atu3297 -1.2 -7.6 two component sensor kinase for C4-dicarboxylate transport compare
Atu0291 -1.2 -7.0 hypothetical protein compare
Atu2113 -1.2 -3.7 N-acetylmuramoyl-L-alanine amidase compare
Atu4176 -1.1 -5.1 hypothetical protein compare
Atu3075 -1.1 -6.2 TetR family transcriptional regulator compare
Atu3912 -1.1 -5.8 hypothetical protein compare
Atu0141 -1.1 -1.6 cytochrome O ubiquinol oxidase subunit I compare
Atu5010 -1.1 -1.5 hypothetical protein compare
Atu8088 -1.0 -2.1 hypothetical protein compare
Atu0189 -1.0 -2.9 ABC transporter, membrane spanning protein (peptide) compare
Atu3482 -1.0 -5.3 pantoate--beta-alanine ligase compare
Atu1589 -1.0 -3.9 aminotransferase, class I compare
Atu1810 -1.0 -1.4 hypothetical protein compare
Atu1439 -1.0 -2.1 hypothetical protein compare
Atu3032 -1.0 -3.2 hypothetical protein compare
Atu4576 -1.0 -5.8 ROK family transcriptional regulator compare
Atu4232 -0.9 -4.9 GntR family transcriptional regulator compare
Atu3913 -0.9 -5.7 biotin carboxylase compare
Atu0895 -0.9 -2.1 ABC transporter, substrate binding protein compare
Atu5468 -0.9 -1.7 hypothetical protein compare
Atu3008 -0.9 -1.0 hypothetical protein compare
Atu1774 -0.9 -5.2 ABC transporter, substrate binding protein (peptide) compare
Atu1354 -0.9 -1.3 6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase compare
Atu5088 -0.9 -1.8 hypothetical protein compare
Atu2124 -0.9 -4.0 transcriptional regulator, ArsR family compare
Atu1581 -0.9 -2.1 hypothetical protein compare
Atu6098 -0.9 -0.6 transcriptional regulator, HTH family compare
Atu3697 -0.9 -3.1 ATP-dependent protease LA 2 compare
Atu2678 -0.8 -4.0 2'-5' RNA ligase compare
Atu2439 -0.8 -1.5 hypothetical protein compare
Atu0422 -0.8 -1.3 ABC transporter, membrane spanning protein compare
Atu0846 -0.8 -3.1 transcriptional regulator, MarR family compare
Atu4044 -0.8 -5.5 glycine betaine ABC transporter ATPase compare
Atu0328 -0.8 -5.2 heat-inducible transcription repressor compare
Atu1765 -0.8 -5.1 transcriptional regulator, LysR family compare
Atu1793 -0.8 -4.1 phosphatidylcholine synthase compare
Atu5483 -0.8 -3.2 GntR family transcriptional regulator compare
Atu4890 -0.8 -1.5 IS426 transposase compare
Atu3353 -0.8 -5.2 mannose-1-phosphate guanylyltransferase compare
Atu0190 -0.8 -4.7 ABC transporter, nucleotide binding/ATPase protein (peptide) compare
Atu0119 -0.7 -1.0 hypothetical protein compare
Atu4223 -0.7 -1.8 sarcosine oxidase delta subunit compare
Atu3311 -0.7 -5.6 phosphomannose isomerase compare
Atu0941 -0.7 -0.8 hypothetical protein compare
Atu4144 -0.7 -1.1 hypothetical protein compare
Atu2209 -0.7 -2.6 pyrroline-5-carboxylate reductase compare
Atu2606 -0.7 -2.4 transcriptional regulator, GntR family compare
Atu4045 -0.7 -5.4 glycine betaine ABC transporter permease compare
Atu1260 -0.7 -1.2 hypothetical protein compare
Atu8115 -0.7 -3.4 Hypothetical Protein compare
Atu1766 -0.7 -3.6 hypothetical protein compare
Atu2812 -0.7 -3.6 hypothetical protein compare
Atu4046 -0.7 -4.8 glycine betaine ABC transporter substrate-binding protein compare
Atu0689 -0.7 -5.3 ribosomal large subunit pseudouridine synthase B compare
Atu3030 -0.7 -3.3 hypothetical protein compare
Atu5160 -0.7 -2.2 transcriptional regulator protein compare
Atu1380 -0.7 -3.8 zinc metallopeptidase compare
Atu4096 -0.7 -4.8 nicotinate-nucleotide pyrophosphorylase compare
Atu3012 -0.7 -1.2 hypothetical protein compare
Atu3572 -0.7 -4.1 transcriptional regulator compare
Atu5164 -0.7 -0.6 type IV secretion protein AvhB3 compare
Atu5142 -0.7 -1.0 hypothetical protein compare
Atu5145 -0.7 -2.2 acetyltransferase compare
Atu5451 -0.7 -0.8 hypothetical protein compare
Atu0876 -0.7 -1.3 superoxide dismutase compare
Atu0907 -0.7 -2.0 Phosphinothricin acetyltransferase compare
Atu1009 -0.7 -1.8 hypothetical protein compare
Atu4897 -0.7 -0.9 hypothetical protein compare
Atu2057 -0.7 -1.9 DNA helicase II compare
Atu8161 -0.7 -1.1 hypothetical protein compare
Atu0302 -0.7 -4.2 tetrapyrrole methylase family protein compare
Atu0319 -0.7 -1.0 ubiquinone biosynthesis protein compare
Atu1677 -0.7 -2.6 queuine tRNA-ribosyltransferase compare
Atu4888 -0.7 -2.6 hypothetical protein compare
Atu1679 -0.6 -1.4 peptidyl prolyl cis-trans isomerase compare
Atu1164 -0.6 -4.5 hypothetical protein compare
Atu4878 -0.6 -2.7 hypothetical protein compare
Atu1699 -0.6 -2.0 molybdopterin-guanine dinucleotide biosynthesis protein B compare
Atu1592 -0.6 -4.5 hypothetical protein compare
Atu0322 -0.6 -2.6 enoyl CoA hydratase compare
Atu3017 -0.6 -0.8 phosphoglyceromutase compare
Atu2464 -0.6 -1.9 formyltetrahydrofolate deformylase compare
Atu3910 -0.6 -2.6 LamB/YcsF family protein compare
Atu0845 -0.6 -2.0 hypothetical protein compare
Atu8096 -0.6 -1.4 hypothetical protein compare
Atu1714 -0.6 -1.2 exonuclease III compare
Atu0723 -0.6 -1.2 FAD dependent oxidoreductase compare
Atu2183 -0.6 -3.6 lipopolysaccharide core biosynthesis mannosyltransferase compare
Atu1125 -0.6 -2.7 ABC transporter, membrane spanning protein compare
Atu0421 -0.6 -1.0 ABC transporter, membrane spanning protein compare
Atu4896 -0.6 -1.3 acetyltransferase compare
Atu4870 -0.6 -3.9 NADP-dependent quinone oxidoreductase compare
Atu4873 -0.6 -2.7 TetR family transcriptional regulator compare
Atu2554 -0.6 -1.5 lysyl-tRNA synthetase compare
Atu0821 -0.6 -4.0 ABC transporter, membrane spanning protein compare
Atu0718 -0.6 -1.7 hypothetical protein compare
Atu3613 -0.6 -2.6 hypothetical protein compare
Atu1184 -0.6 -1.6 hypothetical protein compare
Atu2793 -0.6 -2.6 cobyrinic acid a,c-diamide synthase compare


Specific Phenotypes

For 18 genes in this experiment

For nitrogen source Choline chloride in Agrobacterium fabrum C58

For nitrogen source Choline chloride across organisms