Experiment set3IT011 for Pseudomonas simiae WCS417

Compare to:

Gly-Glu carbon source

200 most important genes:

  gene name fitness t score description  
PS417_18600 -7.9 -4.9 isopropylmalate isomerase compare
PS417_23805 -7.8 -5.4 acetolactate synthase 3 regulatory subunit compare
PS417_04415 -6.8 -6.6 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PS417_17490 -6.3 -4.0 ABC transporter ATP-binding protein compare
PS417_18560 -6.1 -14.1 N-(5'-phosphoribosyl)anthranilate isomerase compare
PS417_23545 -5.8 -3.8 gamma-glutamyl kinase compare
PS417_23800 -5.3 -13.3 ketol-acid reductoisomerase compare
PS417_01855 -5.3 -4.8 phosphoribosyl-AMP cyclohydrolase compare
PS417_01575 -5.2 -4.3 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PS417_18585 -5.2 -8.7 3-isopropylmalate dehydrogenase compare
PS417_04420 -5.2 -11.9 histidinol dehydrogenase compare
PS417_24745 -5.1 -6.0 gamma-glutamyl phosphate reductase compare
PS417_00185 -5.1 -6.0 tryptophan synthase subunit beta compare
PS417_09725 -5.0 -12.0 transporter compare
PS417_02510 -5.0 -7.5 ATP phosphoribosyltransferase regulatory subunit compare
PS417_27795 -5.0 -1.8 orotate phosphoribosyltransferase compare
PS417_18595 -4.9 -4.5 3-isopropylmalate dehydratase compare
PS417_23110 -4.8 -10.9 2-isopropylmalate synthase compare
PS417_25720 -4.8 -8.7 anthranilate synthase component II compare
PS417_25725 -4.8 -14.2 anthranilate synthase component I compare
PS417_23995 -4.7 -1.7 preprotein translocase subunit SecG compare
PS417_18530 -4.7 -6.9 O-succinylhomoserine sulfhydrylase compare
PS417_26740 -4.6 -8.7 homoserine acetyltransferase compare
PS417_21035 -4.6 -14.7 multidrug transporter compare
PS417_23810 -4.5 -12.6 acetolactate synthase 3 catalytic subunit compare
PS417_24765 -4.5 -5.4 membrane protein compare
PS417_01565 -4.5 -4.1 imidazole glycerol phosphate synthase compare
PS417_25940 -4.4 -10.6 pyrroloquinoline quinone biosynthesis protein PqqE compare
PS417_16465 -4.4 -11.4 sirohydrochlorin ferrochelatase compare
PS417_17420 -4.3 -9.1 ethanol oxidation regulatory protein ercA (from data) compare
PS417_08230 -4.2 -3.2 lipopolysaccharide biosynthesis protein RfbH compare
PS417_20160 -4.2 -6.9 cysteine synthase compare
PS417_25920 -4.2 -9.1 pyrroloquinoline quinone biosynthesis protein PqqF compare
PS417_17450 -4.2 -6.8 amino acid ABC transporter substrate-binding protein compare
PS417_17415 -4.2 -4.6 histidine kinase compare
PS417_17485 -4.1 -8.2 membrane protein compare
PS417_27195 -4.1 -2.0 N-acetylglutamate synthase compare
PS417_02000 -4.1 -17.1 glutamate synthase compare
PS417_04055 -4.0 -7.4 peptide transporter conserved
PS417_25710 -4.0 -2.0 indole-3-glycerol-phosphate synthase compare
PS417_08125 -4.0 -2.0 prephenate dehydratase compare
PS417_02005 -4.0 -13.5 glutamate synthase compare
PS417_12290 -3.9 -8.9 sulfite reductase compare
PS417_07640 -3.9 -4.8 glyceraldehyde-3-phosphate dehydrogenase compare
PS417_01580 -3.9 -1.8 imidazole glycerol phosphate synthase compare
PS417_17480 -3.9 -8.6 branched-chain amino acid ABC transporter substrate-binding protein compare
PS417_25930 -3.9 -7.4 pyrroloquinoline quinone biosynthesis protein PqqC compare
PS417_26745 -3.9 -7.0 methionine biosynthesis protein MetW compare
PS417_17435 -3.9 -9.6 dehydrogenase compare
PS417_17425 -3.9 -7.1 hypothetical protein compare
PS417_16570 -3.8 -9.0 isocitrate lyase compare
PS417_21750 -3.8 -17.6 acetyl-CoA synthetase compare
PS417_05595 -3.8 -9.3 ornithine carbamoyltransferase compare
PS417_26995 -3.8 -10.4 phosphoserine phosphatase compare
PS417_01950 -3.7 -6.1 malate dehydrogenase compare
PS417_25715 -3.7 -6.6 anthranilate phosphoribosyltransferase compare
PS417_01850 -3.6 -7.1 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PS417_00180 -3.5 -3.9 tryptophan synthase subunit alpha compare
PS417_26890 -3.5 -5.9 dihydroxy-acid dehydratase compare
PS417_06375 -3.5 -1.8 deoxycytidine triphosphate deaminase compare
PS417_01605 -3.5 -3.1 phosphoglycerate mutase compare
PS417_04070 -3.5 -9.6 porin compare
PS417_17495 -3.4 -5.5 multidrug ABC transporter permease compare
PS417_17505 -3.4 -2.7 LuxR family transcriptional regulator compare
PS417_12855 -3.2 -6.2 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_04180 -3.2 -7.0 GntR family transcriptional regulator compare
PS417_26040 -3.2 -4.4 malate synthase compare
PS417_04060 -3.1 -6.3 dipeptide ABC transporter, permease component (from data) conserved
PS417_01710 -3.1 -7.1 histidine utilization repressor compare
PS417_24100 -3.0 -9.4 transcriptional regulator PdhR compare
PS417_17565 -3.0 -3.7 branched-chain amino acid aminotransferase compare
PS417_24155 -3.0 -4.6 ATP-binding protein compare
PS417_20985 -2.9 -4.6 porin compare
PS417_16990 -2.9 -7.0 acyl-CoA dehydrogenase compare
PS417_26990 -2.8 -1.8 RNA pyrophosphohydrolase compare
PS417_04075 -2.8 -7.0 peptide ABC transporter substrate-binding protein compare
PS417_20125 -2.8 -5.7 phosphoribosylglycinamide formyltransferase compare
PS417_27435 -2.8 -10.2 polyphosphate kinase compare
PS417_27585 -2.8 -3.8 diaminopimelate epimerase compare
PS417_26730 -2.8 -2.0 pyrroline-5-carboxylate reductase compare
PS417_08225 -2.7 -7.9 acetolactate synthase compare
PS417_19965 -2.7 -13.3 histidine kinase conserved
PS417_12310 -2.7 -11.8 methionine synthase compare
PS417_04050 -2.7 -2.4 peptide ABC transporter ATP-binding protein compare
PS417_14940 -2.7 -3.4 LysR family transcriptional regulator compare
PS417_04595 -2.7 -4.4 cell division protein MraZ compare
PS417_27875 -2.6 -10.0 histidine kinase compare
PS417_23770 -2.5 -3.9 exodeoxyribonuclease V subunit alpha compare
PS417_08540 -2.5 -4.4 RNA helicase compare
PS417_22115 -2.5 -4.1 transcriptional regulator compare
PS417_27010 -2.5 -9.3 threonine dehydratase compare
PS417_22500 -2.5 -10.9 porin compare
PS417_26985 -2.4 -3.9 phosphoenolpyruvate-protein phosphotransferase compare
PS417_11845 -2.4 -3.8 RpiR family transcriptional regulator compare
PS417_04080 -2.4 -2.6 peptide ABC transporter substrate-binding protein compare
PS417_27305 -2.4 -12.7 5-formyltetrahydrofolate cyclo-ligase compare
PS417_17455 -2.3 -2.4 cytochrome C compare
PS417_08205 -2.2 -4.8 acetyltransferase compare
PS417_22360 -2.2 -6.3 Glycine dehydrogenase (aminomethyl-transferring) (EC 1.4.4.2) (from data) conserved
PS417_22570 -2.2 -1.7 H-NS histone compare
PS417_21030 -2.2 -7.3 GntR family transcriptional regulator compare
PS417_21655 -2.1 -2.0 aspartate kinase compare
PS417_22370 -2.1 -6.0 Aminomethyltransferase (EC 2.1.2.10) (from data) compare
PS417_05570 -2.1 -7.1 DeoR faimly transcriptional regulator compare
PS417_20610 -2.1 -2.1 hypothetical protein compare
PS417_21210 -2.1 -2.5 amidotransferase compare
PS417_03560 -2.1 -3.6 GTP-binding protein compare
PS417_03310 -2.1 -6.7 carbonate dehydratase compare
PS417_17515 -2.0 -9.0 GfdT protein compare
PS417_21125 -2.0 -10.2 phosphoadenosine phosphosulfate reductase compare
PS417_04270 -2.0 -12.0 ribonuclease G compare
PS417_16510 -2.0 -5.4 Clp protease ClpX compare
PS417_05840 -1.9 -5.4 LuxR family transcriptional regulator compare
PS417_03925 -1.9 -5.5 nicotinate-nucleotide pyrophosphorylase compare
PS417_02485 -1.9 -5.5 tRNA delta(2)-isopentenylpyrophosphate transferase compare
PS417_05165 -1.9 -3.2 cytosol aminopeptidase compare
PS417_10995 -1.9 -3.4 GntR family transcriptional regulator compare
PS417_08195 -1.8 -8.6 hypothetical protein compare
PS417_08245 -1.8 -1.5 CDP-6-deoxy-L-threo-D-glycero-4-hexulose-3- dehydrase reductase compare
PS417_27835 -1.8 -8.4 endoribonuclease compare
PS417_22520 -1.8 -4.1 histidine kinase compare
PS417_09705 -1.8 -3.8 hypothetical protein compare
PS417_22355 -1.8 -5.0 glycine cleavage system protein H compare
PS417_22350 -1.8 -2.9 Fis family transcriptional regulator compare
PS417_08155 -1.8 -2.4 integration host factor subunit beta compare
PS417_09695 -1.7 -2.7 hydrolase compare
PS417_22445 -1.7 -4.2 ATP-dependent DNA helicase RuvB compare
PS417_20665 -1.6 -8.2 hypothetical protein compare
PS417_02225 -1.6 -2.8 bifunctional glutamine-synthetase adenylyltransferase/deadenyltransferase compare
PS417_08730 -1.6 -1.8 cytochrome C compare
PS417_17015 -1.6 -3.8 Isovaleryl-CoA dehydrogenase (EC 1.3.8.4) (from data) compare
PS417_01570 -1.6 -1.1 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase compare
PS417_19160 -1.6 -6.6 hypothetical protein compare
PS417_06770 -1.6 -5.5 multidrug transporter compare
PS417_17510 -1.5 -8.9 histidine kinase compare
PS417_21090 -1.5 -4.2 hypothetical protein compare
PS417_01885 -1.5 -4.8 poly(3-hydroxyalkanoate) granule-associated protein PhaF compare
PS417_03385 -1.5 -1.9 flavin reductase compare
PS417_22270 -1.5 -4.3 hypothetical protein compare
PS417_24835 -1.5 -5.1 hypothetical protein compare
PS417_01560 -1.5 -1.8 imidazoleglycerol-phosphate dehydratase compare
PS417_09700 -1.4 -3.0 transaldolase compare
PS417_11405 -1.4 -5.9 precorrin 6A synthase compare
PS417_04065 -1.4 -2.0 peptide ABC transporter substrate-binding protein compare
PS417_26760 -1.4 -5.1 oxidase compare
PS417_08220 -1.4 -1.1 epimerase compare
PS417_10425 -1.4 -2.5 hypothetical protein compare
PS417_08200 -1.3 -2.2 hypothetical protein compare
PS417_04860 -1.3 -7.0 ATPase compare
PS417_23775 -1.3 -1.5 exodeoxyribonuclease V subunit beta compare
PS417_05160 -1.3 -1.4 DNA polymerase III subunit chi compare
PS417_22450 -1.3 -1.7 ATP-dependent DNA helicase RuvA compare
PS417_08410 -1.3 -2.7 hypothetical protein compare
PS417_17705 -1.3 -2.4 LacI family transcriptional regulator compare
PS417_06075 -1.3 -2.1 hypothetical protein compare
PS417_18425 -1.3 -1.2 sporulation protein compare
PS417_17215 -1.3 -3.2 peptidylprolyl isomerase compare
PS417_20635 -1.2 -1.2 ABC transporter ATP-binding protein compare
PS417_21480 -1.2 -1.8 23S rRNA pseudouridylate synthase compare
PS417_24800 -1.2 -4.9 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase compare
PS417_07615 -1.2 -5.0 TetR family transcriptional regulator compare
PS417_21320 -1.2 -3.6 transcriptional regulator compare
PS417_00295 -1.2 -5.8 hypothetical protein compare
PS417_25390 -1.2 -4.5 MFS transporter compare
PS417_12075 -1.1 -4.3 DNA-binding protein compare
PS417_27605 -1.1 -3.5 hypothetical protein compare
PS417_23380 -1.1 -2.4 cytochrome o ubiquinol oxidase subunit III compare
PS417_27595 -1.1 -2.6 recombinase XerC compare
PS417_08135 -1.1 -5.8 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_21100 -1.1 -7.0 alpha-L-glutamate ligase compare
PS417_07470 -1.1 -1.2 hypothetical protein compare
PS417_06775 -1.1 -4.5 antibiotic transporter compare
PS417_18410 -1.1 -4.1 glutaminase compare
PS417_00445 -1.1 -6.9 histidine kinase compare
PS417_21020 -1.1 -7.9 phosphoenolpyruvate synthase compare
PS417_22385 -1.1 -6.7 quinolinate synthase A compare
PS417_28050 -1.1 -1.5 hypothetical protein compare
PS417_20645 -1.0 -6.9 membrane protein compare
PS417_25155 -1.0 -1.7 hypothetical protein compare
PS417_19955 -1.0 -2.0 hypothetical protein compare
PS417_19075 -1.0 -4.1 ABC transporter ATP-binding protein compare
PS417_08580 -1.0 -4.8 histidine kinase compare
PS417_05535 -1.0 -1.9 Fis family transcriptional regulator compare
PS417_27590 -1.0 -4.8 hypothetical protein compare
PS417_27610 -1.0 -5.1 hypothetical protein compare
PS417_06635 -1.0 -1.6 ferredoxin compare
PS417_15235 -1.0 -3.1 short-chain dehydrogenase compare
PS417_08990 -1.0 -3.1 ABC transporter substrate-binding protein compare
PS417_22365 -1.0 -4.5 serine dehydratase compare
PS417_20620 -1.0 -4.5 glycosyl transferase family 2 compare
PS417_02720 -1.0 -0.9 TetR family transcriptional regulator compare
PS417_23375 -1.0 -1.5 cytochrome C oxidase compare
PS417_09710 -1.0 -2.0 dehydrogenase compare
PS417_26510 -1.0 -6.0 5,10-methylenetetrahydrofolate reductase compare
PS417_26370 -0.9 -3.1 RNA helicase compare
PS417_12355 -0.9 -2.3 magnesium chelatase compare
PS417_16715 -0.9 -1.4 DoxX family protein compare
PS417_16555 -0.9 -2.2 cupin compare
PS417_27205 -0.9 -3.4 adenylate cyclase compare
PS417_27490 -0.9 -2.2 hypothetical protein compare


Specific Phenotypes

For 29 genes in this experiment

For carbon source Gly-Glu in Pseudomonas simiae WCS417

For carbon source Gly-Glu across organisms