Culturing: fluoroDangl_ML3, 24 deep-well microplate; Multitron, Aerobic, at 30 (C), shaken=750 rpm
| Pathway | #Steps | #Present | #Specific |
|---|
| ethanol degradation I | 2 | 2 | 2 |
| cadaverine biosynthesis | 1 | 1 | 1 |
| L-aspartate degradation I | 1 | 1 | 1 |
| L-aspartate biosynthesis | 1 | 1 | 1 |
| arginine dependent acid resistance | 1 | 1 | 1 |
| 3-(4-hydroxyphenyl)pyruvate biosynthesis | 1 | 1 | 1 |
| acetaldehyde biosynthesis I | 1 | 1 | 1 |
| glycine biosynthesis II | 3 | 3 | 2 |
| glycine cleavage | 3 | 3 | 2 |
| pyruvate fermentation to ethanol III | 3 | 2 | 2 |
| pyruvate fermentation to ethanol I | 3 | 2 | 2 |
| superpathway of putrescine biosynthesis | 4 | 4 | 2 |
| L-threonine degradation IV | 2 | 2 | 1 |
| putrescine biosynthesis I | 2 | 2 | 1 |
| L-arginine degradation III (arginine decarboxylase/agmatinase pathway) | 2 | 2 | 1 |
| putrescine biosynthesis III | 2 | 2 | 1 |
| L-glutamate degradation II | 2 | 2 | 1 |
| L-phenylalanine degradation III | 4 | 2 | 2 |
| L-tyrosine degradation III | 4 | 2 | 2 |
| atromentin biosynthesis | 2 | 1 | 1 |
| L-tryptophan degradation IV (via indole-3-lactate) | 2 | 1 | 1 |
| pyruvate fermentation to ethanol II | 2 | 1 | 1 |
| L-tyrosine degradation II | 2 | 1 | 1 |
| malate/L-aspartate shuttle pathway | 2 | 1 | 1 |
| ethanolamine utilization | 5 | 5 | 2 |
| acetylene degradation (anaerobic) | 5 | 4 | 2 |
| superpathway of polyamine biosynthesis I | 8 | 6 | 3 |
| glycine degradation | 3 | 3 | 1 |
| ethanol degradation II | 3 | 3 | 1 |
| L-phenylalanine biosynthesis I | 3 | 3 | 1 |
| putrescine biosynthesis II | 3 | 3 | 1 |
| L-arginine degradation IV (arginine decarboxylase/agmatine deiminase pathway) | 3 | 3 | 1 |
| 2-aminoethylphosphonate degradation I | 3 | 3 | 1 |
| L-tyrosine biosynthesis I | 3 | 3 | 1 |
| L-leucine degradation III | 3 | 2 | 1 |
| L-isoleucine degradation II | 3 | 2 | 1 |
| L-valine degradation II | 3 | 2 | 1 |
| L-asparagine degradation III (mammalian) | 3 | 2 | 1 |
| L-phenylalanine degradation II (anaerobic) | 3 | 2 | 1 |
| 2-deoxy-D-ribose degradation I | 3 | 2 | 1 |
| sulfolactate degradation III | 3 | 1 | 1 |
| (R)-cysteate degradation | 3 | 1 | 1 |
| aminopropylcadaverine biosynthesis | 3 | 1 | 1 |
| 2-hydroxypenta-2,4-dienoate degradation | 3 | 1 | 1 |
| L-tyrosine degradation IV (to 4-methylphenol) | 3 | 1 | 1 |
| indole-3-acetate biosynthesis VI (bacteria) | 3 | 1 | 1 |
| L-methionine degradation III | 3 | 1 | 1 |
| 2-deoxy-α-D-ribose 1-phosphate degradation | 3 | 1 | 1 |
| sulfoacetaldehyde degradation IV | 3 | 1 | 1 |
| pyrroloquinoline quinone biosynthesis | 7 | 4 | 2 |
| superpathway of polyamine biosynthesis II | 8 | 6 | 2 |
| phytol degradation | 4 | 3 | 1 |
| superpathway of L-aspartate and L-asparagine biosynthesis | 4 | 3 | 1 |
| salidroside biosynthesis | 4 | 1 | 1 |
| L-tryptophan degradation VIII (to tryptophol) | 4 | 1 | 1 |
| spermidine biosynthesis III | 4 | 1 | 1 |
| superpathway of fermentation (Chlamydomonas reinhardtii) | 9 | 5 | 2 |
| L-tyrosine degradation I | 5 | 5 | 1 |
| pyruvate fermentation to isobutanol (engineered) | 5 | 4 | 1 |
| trans-4-hydroxy-L-proline degradation I | 5 | 3 | 1 |
| superpathway of plastoquinol biosynthesis | 5 | 2 | 1 |
| (S)-propane-1,2-diol degradation | 5 | 2 | 1 |
| bisucaberin biosynthesis | 5 | 1 | 1 |
| L-phenylalanine degradation VI (reductive Stickland reaction) | 5 | 1 | 1 |
| phenylethanol biosynthesis | 5 | 1 | 1 |
| catechol degradation I (meta-cleavage pathway) | 5 | 1 | 1 |
| desferrioxamine E biosynthesis | 5 | 1 | 1 |
| lupanine biosynthesis | 5 | 1 | 1 |
| 4-hydroxybenzoate biosynthesis I (eukaryotes) | 5 | 1 | 1 |
| L-tyrosine degradation V (reductive Stickland reaction) | 5 | 1 | 1 |
| desferrioxamine B biosynthesis | 5 | 1 | 1 |
| L-tryptophan degradation XIII (reductive Stickland reaction) | 5 | 1 | 1 |
| C4 photosynthetic carbon assimilation cycle, NAD-ME type | 11 | 6 | 2 |
| superpathway of arginine and polyamine biosynthesis | 17 | 15 | 3 |
| superpathway of L-threonine biosynthesis | 6 | 6 | 1 |
| TCA cycle VIII (Chlamydia) | 6 | 5 | 1 |
| L-lysine degradation X | 6 | 5 | 1 |
| superpathway of pyrimidine deoxyribonucleosides degradation | 6 | 3 | 1 |
| superpathway of sulfolactate degradation | 6 | 2 | 1 |
| triethylamine degradation | 6 | 1 | 1 |
| coenzyme M biosynthesis II | 6 | 1 | 1 |
| superpathway of L-arginine and L-ornithine degradation | 13 | 10 | 2 |
| superpathway of Clostridium acetobutylicum solventogenic fermentation | 13 | 5 | 2 |
| noradrenaline and adrenaline degradation | 13 | 4 | 2 |
| 3-methylbutanol biosynthesis (engineered) | 7 | 6 | 1 |
| superpathway of purine deoxyribonucleosides degradation | 7 | 5 | 1 |
| C4 photosynthetic carbon assimilation cycle, PEPCK type | 14 | 9 | 2 |
| L-lysine degradation I | 7 | 4 | 1 |
| anaerobic energy metabolism (invertebrates, cytosol) | 7 | 4 | 1 |
| serotonin degradation | 7 | 3 | 1 |
| catechol degradation II (meta-cleavage pathway) | 7 | 2 | 1 |
| toluene degradation I (aerobic) (via o-cresol) | 7 | 1 | 1 |
| toluene degradation V (aerobic) (via toluene-cis-diol) | 7 | 1 | 1 |
| mixed acid fermentation | 16 | 12 | 2 |
| superpathway of ornithine degradation | 8 | 6 | 1 |
| butanol and isobutanol biosynthesis (engineered) | 8 | 3 | 1 |
| 3-phenylpropanoate and 3-(3-hydroxyphenyl)propanoate degradation | 8 | 2 | 1 |
| p-cumate degradation | 8 | 1 | 1 |
| superpathway of Clostridium acetobutylicum acidogenic and solventogenic fermentation | 17 | 7 | 2 |
| superpathway of aromatic amino acid biosynthesis | 18 | 18 | 2 |
| folate transformations III (E. coli) | 9 | 9 | 1 |
| heterolactic fermentation | 18 | 14 | 2 |
| superpathway of L-methionine biosynthesis (transsulfuration) | 9 | 7 | 1 |
| photorespiration III | 9 | 5 | 1 |
| reductive glycine pathway of autotrophic CO2 fixation | 9 | 5 | 1 |
| photorespiration I | 9 | 5 | 1 |
| L-phenylalanine degradation IV (mammalian, via side chain) | 9 | 3 | 1 |
| hexitol fermentation to lactate, formate, ethanol and acetate | 19 | 14 | 2 |
| superpathway of L-phenylalanine biosynthesis | 10 | 10 | 1 |
| superpathway of L-tyrosine biosynthesis | 10 | 10 | 1 |
| photorespiration II | 10 | 6 | 1 |
| meta cleavage pathway of aromatic compounds | 10 | 3 | 1 |
| rosmarinic acid biosynthesis I | 10 | 2 | 1 |
| folate transformations II (plants) | 11 | 10 | 1 |
| superpathway of L-arginine, putrescine, and 4-aminobutanoate degradation | 11 | 8 | 1 |
| superpathway of N-acetylneuraminate degradation | 22 | 15 | 2 |
| (S)-reticuline biosynthesis I | 11 | 1 | 1 |
| p-cymene degradation | 11 | 1 | 1 |
| superpathway of L-methionine biosynthesis (by sulfhydrylation) | 12 | 12 | 1 |
| indole-3-acetate biosynthesis II | 12 | 5 | 1 |
| L-tryptophan degradation XII (Geobacillus) | 12 | 4 | 1 |
| L-tryptophan degradation IX | 12 | 4 | 1 |
| naphthalene degradation to acetyl-CoA | 12 | 2 | 1 |
| cob(II)yrinate a,c-diamide biosynthesis II (late cobalt incorporation) | 13 | 13 | 1 |
| superpathway of L-isoleucine biosynthesis I | 13 | 13 | 1 |
| folate transformations I | 13 | 9 | 1 |
| toluene degradation IV (aerobic) (via catechol) | 13 | 4 | 1 |
| L-tryptophan degradation V (side chain pathway) | 13 | 1 | 1 |
| superpathway of rosmarinic acid biosynthesis | 14 | 3 | 1 |
| superpathway of hyoscyamine (atropine) and scopolamine biosynthesis | 16 | 4 | 1 |
| superpathway of anaerobic energy metabolism (invertebrates) | 17 | 9 | 1 |
| superpathway of L-lysine, L-threonine and L-methionine biosynthesis I | 18 | 16 | 1 |
| superpathway of L-threonine metabolism | 18 | 12 | 1 |
| mandelate degradation to acetyl-CoA | 18 | 9 | 1 |
| superpathway of anaerobic sucrose degradation | 19 | 14 | 1 |
| aspartate superpathway | 25 | 22 | 1 |
| anaerobic aromatic compound degradation (Thauera aromatica) | 27 | 3 | 1 |
| superpathway of chorismate metabolism | 59 | 44 | 2 |
| superpathway of aerobic toluene degradation | 30 | 12 | 1 |
| adenosylcobalamin biosynthesis II (aerobic) | 33 | 31 | 1 |
| superpathway of aromatic compound degradation via 3-oxoadipate | 35 | 21 | 1 |
| superpathway of aromatic compound degradation via 2-hydroxypentadienoate | 42 | 15 | 1 |
| superpathway of L-lysine degradation | 43 | 17 | 1 |
| Methanobacterium thermoautotrophicum biosynthetic metabolism | 56 | 20 | 1 |