Experiment set3IT010 for Pseudomonas simiae WCS417

Compare to:

D-Alanine carbon source

200 most important genes:

  gene name fitness t score description  
PS417_18595 -8.1 -5.6 3-isopropylmalate dehydratase compare
PS417_18600 -6.5 -5.4 isopropylmalate isomerase compare
PS417_01855 -6.3 -5.6 phosphoribosyl-AMP cyclohydrolase compare
PS417_01575 -6.3 -6.0 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PS417_27040 -6.2 -3.4 3-phosphoglycerate dehydrogenase compare
PS417_27705 -6.2 -2.4 amino acid dehydrogenase compare
PS417_23805 -6.0 -7.2 acetolactate synthase 3 regulatory subunit compare
PS417_00185 -5.9 -5.8 tryptophan synthase subunit beta compare
PS417_26740 -5.8 -13.6 homoserine acetyltransferase compare
PS417_25720 -5.7 -9.9 anthranilate synthase component II compare
PS417_23800 -5.5 -14.3 ketol-acid reductoisomerase compare
PS417_02510 -5.5 -11.7 ATP phosphoribosyltransferase regulatory subunit compare
PS417_18560 -5.4 -12.4 N-(5'-phosphoribosyl)anthranilate isomerase compare
PS417_08125 -5.4 -2.1 prephenate dehydratase compare
PS417_04415 -5.4 -11.9 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PS417_01565 -5.3 -5.6 imidazole glycerol phosphate synthase compare
PS417_25725 -5.2 -15.1 anthranilate synthase component I compare
PS417_28220 -5.1 -3.8 LysR family transcriptional regulator compare
PS417_27795 -5.1 -2.0 orotate phosphoribosyltransferase compare
PS417_23810 -5.1 -13.3 acetolactate synthase 3 catalytic subunit compare
PS417_04420 -5.0 -12.2 histidinol dehydrogenase compare
PS417_23545 -5.0 -5.9 gamma-glutamyl kinase compare
PS417_06375 -5.0 -2.0 deoxycytidine triphosphate deaminase compare
PS417_00180 -5.0 -4.8 tryptophan synthase subunit alpha compare
PS417_18585 -4.9 -8.7 3-isopropylmalate dehydrogenase compare
PS417_26745 -4.8 -7.1 methionine biosynthesis protein MetW compare
PS417_01850 -4.7 -12.1 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PS417_01605 -4.7 -3.2 phosphoglycerate mutase compare
PS417_18530 -4.6 -10.4 O-succinylhomoserine sulfhydrylase compare
PS417_12290 -4.2 -11.2 sulfite reductase compare
PS417_07640 -4.2 -3.8 glyceraldehyde-3-phosphate dehydrogenase compare
PS417_01580 -4.1 -2.0 imidazole glycerol phosphate synthase compare
PS417_16465 -3.9 -11.1 sirohydrochlorin ferrochelatase compare
PS417_25715 -3.9 -7.1 anthranilate phosphoribosyltransferase compare
PS417_20125 -3.9 -6.8 phosphoribosylglycinamide formyltransferase compare
PS417_24745 -3.9 -7.4 gamma-glutamyl phosphate reductase compare
PS417_02005 -3.8 -16.5 glutamate synthase compare
PS417_27835 -3.8 -6.7 endoribonuclease compare
PS417_26730 -3.7 -2.0 pyrroline-5-carboxylate reductase compare
PS417_27195 -3.6 -2.8 N-acetylglutamate synthase compare
PS417_02000 -3.6 -17.7 glutamate synthase compare
PS417_02415 -3.5 -6.1 phosphoserine phosphatase compare
PS417_23110 -3.5 -7.3 2-isopropylmalate synthase compare
PS417_25710 -3.5 -2.7 indole-3-glycerol-phosphate synthase compare
PS417_12855 -3.4 -7.5 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_20160 -3.4 -4.2 cysteine synthase compare
PS417_05595 -3.4 -7.0 ornithine carbamoyltransferase compare
PS417_26995 -3.2 -8.5 phosphoserine phosphatase compare
PS417_08230 -3.2 -4.3 lipopolysaccharide biosynthesis protein RfbH compare
PS417_26890 -3.1 -4.9 dihydroxy-acid dehydratase compare
PS417_01570 -2.9 -2.0 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase compare
PS417_23995 -2.8 -1.9 preprotein translocase subunit SecG compare
PS417_27710 -2.8 -4.5 AsnC family transcriptional regulator conserved
PS417_20610 -2.6 -2.5 hypothetical protein compare
PS417_04365 -2.5 -1.4 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase compare
PS417_08200 -2.4 -6.1 hypothetical protein compare
PS417_01560 -2.3 -2.5 imidazoleglycerol-phosphate dehydratase compare
PS417_01210 -2.1 -10.0 hypothetical protein compare
PS417_24155 -2.1 -3.1 ATP-binding protein compare
PS417_01710 -1.9 -8.2 histidine utilization repressor compare
PS417_23380 -1.9 -3.4 cytochrome o ubiquinol oxidase subunit III compare
PS417_24835 -1.8 -6.3 hypothetical protein compare
PS417_07170 -1.8 -4.3 hypothetical protein compare
PS417_21705 -1.8 -6.9 arginine N-succinyltransferase compare
PS417_21700 -1.8 -5.6 arginine N-succinyltransferase compare
PS417_05405 -1.7 -9.4 L-alanine and D-alanine permease (from data) conserved
PS417_20985 -1.7 -3.2 porin compare
PS417_23770 -1.6 -2.8 exodeoxyribonuclease V subunit alpha compare
PS417_05570 -1.6 -7.2 DeoR faimly transcriptional regulator compare
PS417_03925 -1.6 -7.5 nicotinate-nucleotide pyrophosphorylase compare
PS417_26985 -1.6 -6.2 phosphoenolpyruvate-protein phosphotransferase compare
PS417_08245 -1.5 -1.6 CDP-6-deoxy-L-threo-D-glycero-4-hexulose-3- dehydrase reductase compare
PS417_18690 -1.5 -4.4 aromatic amino acid aminotransferase compare
PS417_26695 -1.5 -1.6 uracil phosphoribosyltransferase compare
PS417_22385 -1.5 -9.3 quinolinate synthase A compare
PS417_21020 -1.4 -9.4 phosphoenolpyruvate synthase conserved
PS417_21655 -1.4 -1.7 aspartate kinase compare
PS417_18590 -1.4 -2.7 SAM-dependent methyltransferase compare
PS417_08225 -1.4 -6.0 acetolactate synthase compare
PS417_26040 -1.4 -5.2 malate synthase compare
PS417_21125 -1.3 -6.6 phosphoadenosine phosphosulfate reductase compare
PS417_20665 -1.3 -6.9 hypothetical protein compare
PS417_08195 -1.3 -6.7 hypothetical protein compare
PS417_27435 -1.3 -7.1 polyphosphate kinase compare
PS417_05165 -1.3 -2.1 cytosol aminopeptidase compare
PS417_26725 -1.3 -4.3 hypothetical protein compare
PS417_08205 -1.3 -4.1 acetyltransferase compare
PS417_04270 -1.2 -7.2 ribonuclease G compare
PS417_23375 -1.2 -2.1 cytochrome C oxidase compare
PS417_26005 -1.2 -8.1 biotin synthase compare
PS417_08580 -1.2 -4.9 histidine kinase compare
PS417_27010 -1.2 -6.9 threonine dehydratase compare
PS417_21690 -1.2 -4.0 N-succinylarginine dihydrolase compare
PS417_04180 -1.1 -2.9 GntR family transcriptional regulator compare
PS417_08365 -1.1 -1.3 hypothetical protein compare
PS417_23390 -1.1 -5.9 ubiquinol oxidase subunit II compare
PS417_17240 -1.1 -3.4 trigger factor compare
PS417_25155 -1.1 -2.1 hypothetical protein compare
PS417_01640 -1.1 -4.1 histidine kinase compare
PS417_03260 -1.1 -2.6 5S ribosomal RNA compare
PS417_02690 -1.0 -5.4 N-acylglucosamine 2-epimerase compare
PS417_26990 -1.0 -1.6 RNA pyrophosphohydrolase compare
PS417_23370 -1.0 -3.3 protoheme IX farnesyltransferase compare
PS417_05850 -1.0 -3.1 LysR family transcriptional regulator compare
PS417_06145 -1.0 -1.3 hypothetical protein compare
PS417_06200 -1.0 -4.0 protein-PII uridylyltransferase compare
PS417_03310 -1.0 -3.9 carbonate dehydratase compare
PS417_22570 -0.9 -1.2 H-NS histone compare
PS417_13510 -0.9 -1.4 polyketide cyclase compare
PS417_16990 -0.9 -4.2 acyl-CoA dehydrogenase compare
PS417_20635 -0.9 -1.1 ABC transporter ATP-binding protein compare
PS417_22445 -0.9 -3.1 ATP-dependent DNA helicase RuvB compare
PS417_23950 -0.9 -3.4 polynucleotide phosphorylase/polyadenylase compare
PS417_18780 -0.9 -2.0 flavin reductase compare
PS417_14070 -0.9 -1.2 hypothetical protein compare
PS417_05455 -0.9 -4.4 XRE family transcriptional regulator compare
PS417_20620 -0.9 -4.1 glycosyl transferase family 2 compare
PS417_23900 -0.9 -4.7 poly(A) polymerase compare
PS417_08220 -0.9 -0.9 epimerase compare
PS417_03935 -0.9 -3.5 N-acetyl-anhydromuranmyl-L-alanine amidase compare
PS417_23775 -0.9 -2.3 exodeoxyribonuclease V subunit beta compare
PS417_14755 -0.8 -1.9 UV damage repair endonuclease UvdE compare
PS417_08135 -0.8 -4.2 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_21355 -0.8 -2.8 hypothetical protein compare
PS417_23385 -0.8 -5.7 cytochrome o ubiquinol oxidase subunit I compare
PS417_06945 -0.8 -0.9 membrane protein compare
PS417_25990 -0.8 -3.6 malonyl-CoA O-methyltransferase compare
PS417_02280 -0.8 -2.3 GlcNAc-PI de-N-acetylase compare
PS417_27035 -0.8 -3.4 FAD-linked oxidase compare
PS417_17495 -0.8 -5.1 multidrug ABC transporter permease compare
PS417_12375 -0.8 -2.0 serine/threonine protein phosphatase compare
PS417_28070 -0.8 -4.2 phosphate ABC transporter ATP-binding protein compare
PS417_17480 -0.8 -3.7 branched-chain amino acid ABC transporter substrate-binding protein compare
PS417_10055 -0.8 -2.0 hypothetical protein compare
PS417_21015 -0.8 -2.3 EstX protein compare
PS417_24810 -0.7 -4.8 aldehyde dehydrogenase compare
PS417_05815 -0.7 -3.2 recombinase RecA compare
PS417_22795 -0.7 -2.1 exclusion suppressor FxsA compare
PS417_01280 -0.7 -1.7 peptidoglycan-binding protein LysM compare
PS417_11810 -0.7 -2.4 oxidoreductase compare
PS417_02980 -0.7 -1.2 chemotaxis protein compare
PS417_07010 -0.7 -1.6 pseudouridine synthase compare
PS417_10995 -0.7 -2.1 GntR family transcriptional regulator compare
PS417_27640 -0.7 -1.5 TetR family transcriptional regulator compare
PS417_09245 -0.7 -1.6 recombinase RdgC compare
PS417_05695 -0.7 -2.9 transcriptional regulator compare
PS417_06095 -0.7 -1.6 energy transducer TonB compare
PS417_26240 -0.7 -1.6 N-methylproline demethylase compare
PS417_09010 -0.7 -2.2 phosphohistidine phosphatase compare
PS417_21750 -0.7 -5.8 acetyl-CoA synthetase compare
PS417_27595 -0.7 -1.6 recombinase XerC compare
PS417_12565 -0.7 -2.6 2-dehydro-3-deoxygluconokinase compare
PS417_22520 -0.7 -1.8 histidine kinase compare
PS417_28080 -0.7 -5.1 phosphate ABC transporter permease compare
PS417_04875 -0.7 -1.4 molybdenum cofactor biosynthesis protein MoaE compare
PS417_06645 -0.7 -4.5 RNA polymerase-associated protein RapA compare
PS417_24615 -0.7 -1.2 hypothetical protein compare
PS417_17780 -0.7 -0.7 Ais protein compare
PS417_27875 -0.7 -3.0 histidine kinase compare
PS417_02630 -0.7 -2.4 NAD synthetase compare
PS417_24500 -0.7 -2.1 DEAD/DEAH box helicase compare
PS417_00065 -0.7 -1.0 3-methyladenine DNA glycosylase compare
PS417_20950 -0.7 -2.5 hypothetical protein compare
PS417_23160 -0.7 -2.6 50S rRNA methyltransferase compare
PS417_08990 -0.7 -1.6 ABC transporter substrate-binding protein compare
PS417_17490 -0.7 -1.1 ABC transporter ATP-binding protein compare
PS417_00195 -0.7 -1.9 hypothetical protein compare
PS417_26000 -0.7 -3.5 8-amino-7-oxononanoate synthase compare
PS417_06540 -0.7 -1.0 membrane protein compare
PS417_09085 -0.7 -1.0 hypothetical protein compare
PS417_14200 -0.7 -2.1 hypothetical protein compare
PS417_21025 -0.6 -3.2 PEP synthetase regulatory protein compare
PS417_14240 -0.6 -2.4 isochorismatase compare
PS417_11705 -0.6 -3.9 cyclic peptide transporter compare
PS417_19480 -0.6 -3.9 aminopeptidase compare
PS417_08540 -0.6 -2.1 RNA helicase compare
PS417_10870 -0.6 -1.6 GABA permease compare
PS417_06680 -0.6 -4.4 nuclease PIN compare
PS417_07620 -0.6 -1.7 beta-hexosaminidase compare
PS417_26540 -0.6 -3.9 adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
PS417_02820 -0.6 -1.8 urea ABC transporter ATP-binding protein compare
PS417_21510 -0.6 -1.1 histidine kinase compare
PS417_01505 -0.6 -4.0 gamma-aminobutyrate transporter compare
PS417_02560 -0.6 -1.2 23S rRNA methyltransferase compare
PS417_03705 -0.6 -1.3 2-alkenal reductase compare
PS417_01635 -0.6 -3.4 nitrogen regulation protein NR(I) compare
PS417_19720 -0.6 -0.9 DNA-binding protein compare
PS417_02670 -0.6 -1.9 ABC transporter compare
PS417_22715 -0.6 -2.1 heme oxygenase compare
PS417_15975 -0.6 -0.7 glutamate carboxypeptidase compare
PS417_05160 -0.6 -0.7 DNA polymerase III subunit chi compare
PS417_14045 -0.6 -2.1 alkyl hydroperoxide reductase compare
PS417_02555 -0.6 -4.8 exoribonuclease R compare
PS417_22580 -0.6 -2.4 membrane protein compare
PS417_14555 -0.6 -2.5 AsnC family transcriptional regulator compare
PS417_17015 -0.6 -1.8 Isovaleryl-CoA dehydrogenase (EC 1.3.8.4) (from data) compare
PS417_21210 -0.6 -1.9 amidotransferase compare
PS417_28075 -0.6 -3.2 phosphate ABC transporter permease compare
PS417_11455 -0.6 -1.3 hypothetical protein compare
PS417_12220 -0.6 -1.6 hydroxyacylglutathione hydrolase compare


Specific Phenotypes

For 2 genes in this experiment

For carbon source D-Alanine in Pseudomonas simiae WCS417

For carbon source D-Alanine across organisms