Experiment set3IT010 for Pontibacter actiniarum KMM 6156, DSM 19842

Compare to:

marine broth with D-Cycloserine 0.032 mg/ml

200 most detrimental genes:

  gene name fitness t score description  
CA264_17915 +2.2 9.2 LPS biosynthesis protein WbpP compare
CA264_12365 +1.9 17.0 asparagine synthetase B compare
CA264_15880 +1.8 3.8 5-formyltetrahydrofolate cyclo-ligase compare
CA264_12370 +1.7 13.1 hypothetical protein compare
CA264_15050 +1.7 15.5 3-hydroxyacyl-CoA dehydrogenase compare
CA264_02055 +1.5 3.0 hypothetical protein compare
CA264_12350 +1.5 10.7 glycosyltransferase family 1 protein compare
CA264_07030 +1.5 10.6 UDP-glucose 4-epimerase compare
CA264_13015 +1.4 11.5 sensor histidine kinase compare
CA264_12355 +1.4 10.3 polysaccharide deacetylase compare
CA264_17760 +1.4 10.5 leucine dehydrogenase compare
CA264_12345 +1.4 7.1 lipid carrier--UDP-N-acetylgalactosaminyltransferase compare
CA264_15045 +1.4 6.1 acetyl-CoA acetyltransferase compare
CA264_04045 +1.4 12.9 hypothetical protein compare
CA264_07245 +1.4 6.8 hypothetical protein compare
CA264_00015 +1.4 6.8 hypothetical protein compare
CA264_17905 +1.4 10.1 UDP-glucose 4-epimerase GalE compare
CA264_17680 +1.4 9.3 CoB--CoM heterodisulfide reductase compare
CA264_12385 +1.3 9.4 glycosyl transferase compare
CA264_12435 +1.3 8.4 GlcNAc-PI de-N-acetylase compare
CA264_08265 +1.3 3.5 iron-sulfur cluster assembly accessory protein compare
CA264_12400 +1.3 8.9 hypothetical protein compare
CA264_12465 +1.2 7.7 NAD-dependent dehydratase compare
CA264_08120 +1.2 7.9 electron transfer flavoprotein subunit alpha compare
CA264_15035 +1.2 9.6 acyl-CoA dehydrogenase compare
CA264_12410 +1.2 2.5 serine acetyltransferase compare
CA264_12390 +1.2 9.4 hypothetical protein compare
CA264_01385 +1.2 8.5 iron ABC transporter substrate-binding protein compare
CA264_18775 +1.1 1.8 hypothetical protein compare
CA264_12325 +1.1 7.6 polysaccharide biosynthesis protein compare
CA264_12155 +1.1 2.7 histidine phosphatase family protein compare
CA264_12375 +1.1 7.7 hypothetical protein compare
CA264_05645 +1.1 4.6 L-serine dehydratase, iron-sulfur-dependent subunit beta compare
CA264_12300 +1.1 3.6 RNase III inhibitor compare
CA264_08115 +1.0 5.2 electron transfer flavoprotein subunit alpha compare
CA264_04610 +1.0 8.3 chain length determinant protein compare
CA264_17675 +1.0 6.3 Fe-S oxidoreductase compare
CA264_10920 +1.0 7.6 helix-turn-helix-type transcriptional regulator compare
CA264_00410 +1.0 6.1 enoyl-CoA hydratase compare
CA264_19150 +1.0 7.5 TonB dependent receptor compare
CA264_12150 +1.0 3.0 hypothetical protein compare
CA264_13130 +1.0 4.7 peptidase S1 compare
CA264_10005 +1.0 2.6 hypothetical protein compare
CA264_17640 +1.0 4.0 acyl-CoA dehydrogenase compare
CA264_20660 +1.0 4.7 methylmalonyl Co-A mutase-associated GTPase MeaB compare
CA264_14475 +1.0 5.7 hypothetical protein compare
CA264_12425 +0.9 4.7 CMP-N-acetylneuraminic acid synthetase compare
CA264_01390 +0.9 6.3 iron ABC transporter permease compare
CA264_20570 +0.9 2.7 inorganic pyrophosphatase compare
CA264_12430 +0.9 5.6 nucleotidyltransferase compare
CA264_12335 +0.9 5.1 pyridoxal phosphate-dependent aminotransferase compare
CA264_13340 +0.9 2.3 iron-sulfur cluster assembly accessory protein compare
CA264_12210 +0.9 5.4 hypothetical protein compare
CA264_12415 +0.9 6.6 hypothetical protein compare
CA264_06600 +0.9 6.2 glycosyltransferase compare
CA264_06355 +0.9 6.6 ergothioneine biosynthesis protein EgtB compare
CA264_12405 +0.9 6.5 hypothetical protein compare
CA264_18135 +0.9 5.0 ABC transporter ATP-binding protein compare
CA264_06250 +0.9 2.2 N-acetyl-gamma-glutamyl-phosphate reductase compare
CA264_06345 +0.9 7.2 hypothetical protein compare
CA264_19005 +0.9 6.7 SusC/RagA family TonB-linked outer membrane protein compare
CA264_11305 +0.9 5.2 transcriptional regulator compare
CA264_12475 +0.8 5.3 alanine dehydrogenase compare
CA264_18285 +0.8 7.2 hypothetical protein compare
CA264_15670 +0.8 1.5 DUF4295 domain-containing protein compare
CA264_16995 +0.8 5.8 hypothetical protein compare
CA264_05185 +0.8 3.6 hypothetical protein compare
CA264_16710 +0.8 1.6 transcriptional regulator compare
CA264_03270 +0.8 2.2 hypothetical protein compare
CA264_20930 +0.8 1.4 hypothetical protein compare
CA264_18415 +0.8 5.7 alanine dehydrogenase compare
CA264_08780 +0.8 5.3 hypothetical protein compare
CA264_17565 +0.7 1.3 hypothetical protein compare
CA264_14480 +0.7 3.9 large-conductance mechanosensitive channel compare
CA264_14560 +0.7 1.5 VanZ family protein compare
CA264_18515 +0.7 2.1 GntR family transcriptional regulator compare
CA264_08260 +0.7 3.1 pseudouridine synthase compare
CA264_20700 +0.7 4.3 hypothetical protein compare
CA264_00170 +0.7 2.6 ATP:cob(I)alamin adenosyltransferase compare
CA264_20980 +0.7 2.8 conjugal transfer protein compare
CA264_07620 +0.7 2.5 hypothetical protein compare
CA264_20050 +0.7 3.5 hypothetical protein compare
CA264_16785 +0.7 6.1 methionine synthase compare
CA264_12115 +0.7 4.2 hypothetical protein compare
CA264_02120 +0.7 2.8 GNAT family N-acetyltransferase compare
CA264_03160 +0.7 2.6 metallophosphoesterase compare
CA264_00405 +0.7 1.1 transcriptional repressor compare
CA264_02105 +0.7 3.9 hypothetical protein compare
CA264_04495 +0.7 4.5 histidine kinase compare
CA264_09115 +0.6 2.7 hypothetical protein compare
CA264_06385 +0.6 3.9 tRNA-binding protein compare
CA264_18730 +0.6 2.8 phosphate ABC transporter ATP-binding protein compare
CA264_20120 +0.6 1.3 hypothetical protein compare
CA264_21315 +0.6 1.6 four-helix bundle copper-binding protein compare
CA264_13145 +0.6 2.4 hypothetical protein compare
CA264_13560 +0.6 1.9 membrane protein insertion efficiency factor YidD compare
CA264_00400 +0.6 1.5 alkyl hydroperoxide reductase compare
CA264_03155 +0.6 2.9 hypothetical protein compare
CA264_02565 +0.6 2.6 hypothetical protein compare
CA264_14350 +0.6 3.5 hemolysin compare
CA264_11605 +0.6 1.8 hypothetical protein compare
CA264_06590 +0.6 3.9 3-hydroxybutyryl-CoA dehydrogenase compare
CA264_19145 +0.6 4.6 hypothetical protein compare
CA264_16120 +0.6 2.8 sensor histidine kinase compare
CA264_06610 +0.6 1.4 iron-dependent repressor compare
CA264_15260 +0.6 1.1 glutamine amidotransferase compare
CA264_09985 +0.6 0.6 hypothetical protein compare
CA264_10285 +0.6 1.5 hypothetical protein compare
CA264_14925 +0.6 1.3 hypothetical protein compare
CA264_18495 +0.6 2.4 four helix bundle protein compare
CA264_10995 +0.6 3.6 hypothetical protein compare
CA264_21225 +0.6 1.0 hypothetical protein compare
CA264_07625 +0.6 1.9 phosphohistidine phosphatase compare
CA264_12215 +0.6 2.5 cupin compare
CA264_16770 +0.6 2.7 hypothetical protein compare
CA264_18295 +0.6 4.3 iron-sulfur cluster-binding protein compare
CA264_18275 +0.6 2.2 hypothetical protein compare
CA264_07890 +0.6 1.7 hypothetical protein compare
CA264_01970 +0.6 2.5 multidrug ABC transporter ATP-binding protein compare
CA264_17000 +0.6 4.0 phytoene dehydrogenase compare
CA264_12985 +0.6 3.7 hypothetical protein compare
CA264_07800 +0.6 2.8 hypothetical protein compare
CA264_19685 +0.6 0.8 DNA-binding response regulator compare
CA264_10275 +0.6 2.4 transcriptional regulator compare
CA264_17685 +0.6 3.0 hypothetical protein compare
CA264_15290 +0.5 4.3 alpha/beta hydrolase compare
CA264_17005 +0.5 2.9 hypothetical protein compare
CA264_13995 +0.5 3.1 carbohydrate kinase compare
CA264_08130 +0.5 0.9 antibiotic biosynthesis monooxygenase compare
CA264_20685 +0.5 2.6 transposase compare
CA264_17925 +0.5 3.1 chromate transporter compare
CA264_20950 +0.5 1.1 hypothetical protein compare
CA264_15875 +0.5 4.4 bacillithiol biosynthesis cysteine-adding enzyme BshC compare
CA264_14000 +0.5 3.1 xylose isomerase compare
CA264_17030 +0.5 3.9 hypothetical protein compare
CA264_04150 +0.5 1.9 hypothetical protein compare
CA264_07965 +0.5 4.5 UDP-2,4-diacetamido-2,4, 6-trideoxy-beta-L-altropyranose hydrolase compare
CA264_07425 +0.5 4.2 AI-2E family transporter compare
CA264_16965 +0.5 2.5 hypothetical protein compare
CA264_07900 +0.5 2.4 hypothetical protein compare
CA264_16100 +0.5 1.2 hypothetical protein compare
CA264_10955 +0.5 1.5 phenylacetate-CoA oxygenase subunit PaaJ compare
CA264_15330 +0.5 4.5 SusD/RagB family nutrient-binding outer membrane lipoprotein compare
CA264_11215 +0.5 1.8 N-acetyltransferase compare
CA264_09800 +0.5 2.7 DNA-binding response regulator compare
CA264_04145 +0.5 2.1 hypothetical protein compare
CA264_00865 +0.5 1.7 dihydroorotate dehydrogenase (quinone) compare
CA264_03185 +0.5 3.7 hypothetical protein compare
CA264_02595 +0.5 1.5 oxidoreductase compare
CA264_02500 +0.5 1.0 hypothetical protein compare
CA264_11275 +0.5 2.6 hypothetical protein compare
CA264_01605 +0.5 3.5 arginase compare
CA264_15265 +0.5 3.6 colicin v production protein compare
CA264_10905 +0.5 3.3 phytoene synthase compare
CA264_16085 +0.5 4.2 death-on-curing protein compare
CA264_06605 +0.5 1.9 ketoacyl-ACP synthase III compare
CA264_19680 +0.5 1.8 two-component sensor histidine kinase compare
CA264_14470 +0.5 2.0 hypothetical protein compare
CA264_12160 +0.5 1.2 transcriptional regulator compare
CA264_17350 +0.5 3.3 hypothetical protein compare
CA264_11020 +0.5 1.5 PadR family transcriptional regulator compare
CA264_15270 +0.5 2.5 glutamyl-tRNA amidotransferase compare
CA264_12940 +0.5 2.7 alcohol dehydrogenase compare
CA264_02125 +0.5 2.4 alpha/beta hydrolase compare
CA264_07000 +0.5 2.7 DUF4833 domain-containing protein compare
CA264_14405 +0.5 1.5 hypothetical protein compare
CA264_20375 +0.5 1.4 hypothetical protein compare
CA264_13990 +0.5 2.7 1,4-beta-xylanase compare
CA264_16115 +0.5 2.7 hypothetical protein compare
CA264_17160 +0.5 2.6 ketosteroid isomerase compare
CA264_14935 +0.5 2.2 sec-independent protein translocase TatC compare
CA264_18190 +0.5 2.1 hypothetical protein compare
CA264_17020 +0.5 1.8 methyltransferase type 11 compare
CA264_10325 +0.5 1.2 plasmid mobilization relaxosome protein MobC compare
CA264_14200 +0.5 0.8 NADH-quinone oxidoreductase subunit A compare
CA264_04460 +0.4 0.9 ABC transporter compare
CA264_07885 +0.4 2.2 phenazine biosynthesis protein PhzF family protein compare
CA264_01935 +0.4 2.2 DNA-binding response regulator compare
CA264_18210 +0.4 1.9 L-serine dehydratase, iron-sulfur-dependent subunit alpha compare
CA264_17190 +0.4 0.9 methionine-R-sulfoxide reductase compare
CA264_01815 +0.4 1.1 N-acetyltransferase compare
CA264_03070 +0.4 3.1 group 1 glycosyl transferase compare
CA264_13825 +0.4 1.0 hypothetical protein compare
CA264_20945 +0.4 0.8 hypothetical protein compare
CA264_05400 +0.4 2.3 MarR family transcriptional regulator compare
CA264_00220 +0.4 2.1 pyrophosphatase compare
CA264_00780 +0.4 0.9 glyoxalase compare
CA264_06445 +0.4 1.2 NUDIX hydrolase compare
CA264_00730 +0.4 1.4 hypothetical protein compare
CA264_18095 +0.4 2.6 hypothetical protein compare
CA264_05640 +0.4 3.1 transporter compare
CA264_21640 +0.4 1.6 DDE transposase compare
CA264_21090 +0.4 1.9 hypothetical protein compare
CA264_13000 +0.4 0.9 cupin compare
CA264_16440 +0.4 1.1 hypothetical protein compare
CA264_05425 +0.4 2.2 spheroidene monooxygenase compare
CA264_14850 +0.4 2.9 hypothetical protein compare
CA264_19670 +0.4 1.8 NADPH:quinone oxidoreductase compare
CA264_15055 +0.4 2.3 MarR family transcriptional regulator compare
CA264_09375 +0.4 1.0 transcriptional regulator compare


Specific Phenotypes

For 11 genes in this experiment

For stress D-Cycloserine in Pontibacter actiniarum KMM 6156, DSM 19842

For stress D-Cycloserine across organisms