Experiment set3IT009 for Agrobacterium fabrum C58

Compare to:

Urea nitrogen source

200 most important genes:

  gene name fitness t score description  
Atu3707 -6.3 -4.3 phosphoserine aminotransferase compare
Atu0678 -5.9 -5.7 histidyl-tRNA synthetase compare
Atu0537 -5.6 -6.7 histidinol dehydrogenase compare
Atu2040 -5.5 -6.6 phosphoserine phosphatase compare
Atu3706 -5.5 -9.8 D-3-phosphoglycerate dehydrogenase compare
Atu0679 -5.4 -9.0 ATP phosphoribosyltransferase compare
Atu1030 -5.3 -3.6 GTP pyrophosphohydrolase/synthetase, RelA/SpoT family compare
Atu0400 -5.3 -6.2 orotate phosphoribosyltransferase compare
Atu0041 -5.2 -3.6 glutamine amidotransferase compare
Atu1687 -5.2 -13.8 anthranilate phosphoribosyltransferase compare
Atu2289 -5.1 -18.9 anthranilate synthase component I and II compare
Atu1750 -5.0 -7.6 phosphoribosyl c-AMP cyclohydrolase compare
Atu0035 -5.0 -10.3 phosphoenolpyruvate carboxykinase compare
Atu1205 -4.9 -16.6 threonine dehydratase compare
Atu3469 -4.9 -3.3 phosphoglyceromutase compare
Atu3740 -4.8 -12.6 fructose bisphosphate aldolase compare
Atu0017 -4.8 -4.6 N-(5-phosphoribosyl) anthranilate isomerase compare
Atu2650 -4.7 -13.2 glycerol-3-phosphate dehydrogenase compare
Atu2791 -4.7 -9.0 3-isopropylmalate dehydrogenase compare
Atu2709 -4.6 -21.2 3-isopropylmalate dehydratase, large subunit compare
Atu1688 -4.6 -9.2 indole-3-glycerol-phosphate synthase compare
Atu0039 -4.6 -3.1 imidazoleglycerol-phosphate synthase cyclase compare
Atu2718 -4.5 -9.9 homoserine O-succinyltransferase compare
Atu1620 -4.5 -16.1 triosephosphate isomerase compare
Atu0099 -4.4 -12.5 prephenate dehydratase compare
Atu2264 -4.4 -13.8 2-isopropylmalate synthase compare
Atu0486 -4.3 -7.8 dihydroorotate dehydrogenase compare
Atu4505 -4.3 -12.7 LacI family transcriptional regulator compare
Atu0432 -4.2 -8.4 O-succinylhomoserine sulfhydrylase compare
Atu1686 -4.2 -18.4 peptidyl-prolyl cis-trans isomerse D compare
Atu2036 -4.1 -17.3 acetolactate synthase III, large subunit compare
Atu1850 -4.1 -5.6 phosphoribosylformylglycinamidine synthetase II compare
Atu0399 -4.0 -9.1 dihydroorotase compare
Atu1844 -4.0 -5.0 Phosphoribosylformylglycinamidine synthetase compare
Atu1141 -3.7 -7.9 Phosphoribosylglycinamide synthetase compare
Atu0647 -3.6 -8.5 phosphoribosylamine--glycine ligase compare
Atu1446 -3.6 -3.6 two component response regulator compare
Atu1588 -3.5 -10.9 homoserine dehydrogenase compare
Atu2790 -3.5 -3.6 3-isopropylmalate dehydratase, small subunit compare
Atu2115 -3.5 -15.4 pyrophosphate--fructose-6-phosphate 1-phosphotransferase compare
Atu0043 -3.5 -4.7 imidazoleglycerol-phosphate dehydratase compare
Atu2747 -3.5 -13.5 hypothetical protein compare
Atu2015 -3.5 -13.0 aminotransferase compare
Atu1307 -3.4 -7.6 dihydroorotase compare
Atu3885 -3.4 -11.8 inositol monophosphatase compare
Atu3784 -3.3 -22.8 glutamate synthase large subunit compare
Atu1075 -3.3 -9.8 amidophosphoribosyltransferase compare
Atu3739 -3.2 -4.5 phosphoglycerate kinase compare
Atu3783 -3.2 -16.3 glutamate synthase subunit beta compare
Atu3755 -3.2 -7.3 phosphoribosylaminoimidazole carboxylase ATPase subunit compare
Atu3754 -3.1 -7.8 phosphoribosylaminoimidazole carboxylase catalytic subunit compare
Atu0038 -3.0 -7.3 phosphoribosyl-ATP pyrophosphohydrolase compare
Atu0298 -3.0 -7.7 orotidine 5 compare
Atu1845 -3.0 -5.2 phosphoribosylformylglycinamidine synthase I compare
Atu1140 -3.0 -7.3 phosphoribosyalaminoimidazole-succinocarboxamide synthase compare
Atu5430 -2.9 -2.0 hypothetical protein compare
Atu0040 -2.9 -1.7 phosphoribosylformino-5-aminoimidazole carboxamide ribotide isomerase compare
Atu1456 -2.8 -10.7 sulfite reductase (NADPH) hemoprotein beta-component compare
Atu0332 -2.8 -11.5 RNA polymerase sigma-54 factor compare
Atu1308 -2.8 -7.1 aspartate carbamoyl transferase catalytic subunit compare
Atu2640 -2.7 -5.1 hypothetical protein compare
Atu1589 -2.4 -7.7 aminotransferase, class I compare
Atu3296 -2.4 -11.7 two component response regulator for C4-dicarboxylate transport compare
Atu1454 -2.3 -10.6 siroheme synthase compare
Atu3298 -2.3 -11.9 C4-dicarboxylate transporter DctA compare
Atu2548 -2.2 -14.9 phosphoribosylaminoimidazole-succinocarboxamide synthase compare
Atu0723 -2.2 -3.2 FAD dependent oxidoreductase compare
Atu4096 -2.1 -9.2 nicotinate-nucleotide pyrophosphorylase compare
Atu3297 -2.1 -11.5 two component sensor kinase for C4-dicarboxylate transport compare
Atu1455 -2.0 -4.8 hypothetical protein compare
Atu3483 -2.0 -5.6 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
Atu1463 -2.0 -9.6 glycine cleavage system component H compare
Atu3482 -2.0 -8.1 pantoate--beta-alanine ligase compare
Atu3731 -1.9 -9.8 5-formyltetrahydrofolate cyclo-ligase compare
Atu6098 -1.8 -0.8 transcriptional regulator, HTH family compare
Atu8054 -1.8 -0.8 hypothetical protein compare
Atu1685 -1.8 -1.6 hypothetical protein compare
Atu1462 -1.7 -9.8 glycine cleavage system protein P2 compare
Atu1464 -1.6 -8.4 glycine cleavage system T protein, aminomethyltransferase compare
Atu0769 -1.6 -2.8 protoheme IX farnesyltransferase compare
Atu4097 -1.5 -7.8 L-aspartate oxidase compare
Atu0141 -1.5 -1.6 cytochrome O ubiquinol oxidase subunit I compare
Atu0422 -1.5 -2.5 ABC transporter, membrane spanning protein compare
Atu5142 -1.5 -1.7 hypothetical protein compare
Atu8087 -1.4 -1.3 putative peptidoglycan binding protein compare
Atu1748 -1.4 -7.0 NIFU-like protein compare
Atu4098 -1.4 -9.4 quinolinate synthetase compare
Atu5468 -1.4 -1.8 hypothetical protein compare
Atu2155 -1.4 -10.3 methionine synthase compare
Atu0346 -1.4 -1.8 uridylyltransferase/uridylyl-removing enzyme UTase compare
Atu3012 -1.3 -1.3 hypothetical protein compare
Atu8115 -1.3 -4.3 Hypothetical Protein compare
Atu2020 -1.2 -5.8 transcriptional regulator, TetR family compare
Atu0641 -1.2 -3.6 hypothetical protein compare
Atu2209 -1.2 -2.9 pyrroline-5-carboxylate reductase compare
Atu1163 -1.1 -2.2 exopolysaccharide II synthesis transcriptional activator ExpG compare
Atu5164 -1.1 -0.7 type IV secretion protein AvhB3 compare
Atu2376 -1.1 -1.1 hypothetical protein compare
Atu0029 -1.1 -4.5 S-adenosylhomocysteine hydrolase compare
Atu4166 -1.1 -2.6 UDP-glucose 4-epimerase compare
Atu3008 -1.0 -1.0 hypothetical protein compare
Atu5470 -1.0 -1.8 hypothetical protein compare
Atu3496 -1.0 -2.2 hypothetical protein compare
Atu0031 -1.0 -1.4 PTS system, IIA component compare
Atu1457 -1.0 -1.6 hypothetical protein compare
Atu2286 -1.0 -1.4 hypothetical protein compare
Atu3763 -0.9 -1.4 hypothetical protein compare
Atu0361 -0.9 -2.2 transcriptional regulator compare
Atu2205 -0.9 -2.9 transcriptional regulator, MarR family compare
Atu5485 -0.9 -1.1 hypothetical protein compare
Atu1026 -0.9 -1.8 hypothetical protein compare
Atu4317 -0.9 -2.8 TetR family transcriptional regulator compare
Atu6189 -0.9 -0.7 protein secretion chaperone compare
Atu0188 -0.9 -2.7 ABC transporter, membrane spanning protein (peptide) compare
Atu3290 -0.9 -4.7 phosphomethylpyrimidine kinase compare
Atu2439 -0.9 -1.5 hypothetical protein compare
Atu5455 -0.9 -1.9 hypothetical protein compare
Atu3032 -0.9 -3.1 hypothetical protein compare
Atu1445 -0.8 -3.6 two component sensor kinase compare
Atu2125 -0.8 -1.5 ABC transporter, nucleotide binding/ATPase protein compare
Atu5114 -0.8 -1.1 hypothetical protein compare
Atu5471 -0.8 -2.0 hypothetical protein compare
Atu2728 -0.8 -3.5 beta (1-->2) glucan export ATP-binding protein compare
Atu3997 -0.8 -5.5 biotin synthetase compare
Atu5493 -0.8 -1.4 hypothetical protein compare
Atu0501 -0.8 -5.9 acyl-CoA dehydrogenase compare
Atu0421 -0.8 -1.2 ABC transporter, membrane spanning protein compare
Atu0861 -0.8 -1.2 hypothetical protein compare
Atu2710 -0.8 -4.0 hypothetical protein compare
Atu2800 -0.8 -3.3 precorrin-3B C17-methyltransferase compare
Atu5186 -0.8 -1.1 hypothetical protein compare
Atu1354 -0.7 -0.8 6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase compare
Atu3120 -0.7 -1.3 hypothetical protein compare
Atu0434 -0.7 -2.1 2'-deoxycytidine 5'-triphosphate deaminase compare
Atu4072 -0.7 -1.5 nodulation protein N compare
Atu0413 -0.7 -1.2 stress induced protein compare
Atu5163 -0.7 -1.2 type IV secretion protein AvhB2 compare
Atu1470 -0.7 -1.0 Camphor resistance protein compare
Atu4001 -0.7 -4.5 3-oxoacyl-ACP synthase compare
Atu1439 -0.7 -1.6 hypothetical protein compare
Atu5166 -0.7 -1.5 type IV secretion protein AvhB5 compare
Atu0331 -0.7 -2.4 sigma-54 modulation protein compare
Atu2344 -0.7 -1.8 lactoylglutathione lyase compare
Atu0354 -0.7 -1.5 ferric uptake regulator compare
Atu4866 -0.7 -3.9 hypothetical protein compare
Atu0690 -0.7 -1.5 hypothetical protein compare
Atu5145 -0.7 -1.4 acetyltransferase compare
Atu5034 -0.7 -0.7 hypothetical protein compare
Atu1774 -0.7 -3.9 ABC transporter, substrate binding protein (peptide) compare
Atu3727 -0.7 -2.5 hypothetical protein compare
Atu0190 -0.7 -4.0 ABC transporter, nucleotide binding/ATPase protein (peptide) compare
Atu6030 -0.7 -1.7 ORF13 hypothetical protein compare
Atu2017 -0.7 -0.9 hypothetical protein compare
Atu4000 -0.6 -5.1 adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
Atu6153 -0.6 -1.6 conserved hypothetical protein compare
Atu0702 -0.6 -1.8 calcium-binding protein, regucalcin compare
Atu3998 -0.6 -4.6 8-amino-7-oxononanoate synthase compare
Atu4890 -0.6 -1.2 IS426 transposase compare
Atu6009 -0.6 -1.7 indole-3-lactate synthase compare
Atu6067 -0.6 -2.0 conserved hypothetical protein compare
Atu4837 -0.6 -2.7 hypothetical protein compare
Atu3579 -0.6 -2.2 lactoylglutathione lyase compare
Atu6120 -0.6 -2.0 HNS-type DNA binding protein compare
Atu2569 -0.6 -4.5 thiamine biosynthesis protein compare
Atu1775 -0.6 -2.4 polyketide biosynthesis associated protein compare
Atu4617 -0.6 -4.2 dTDP-D-glucose-4,6-dehydratase compare
Atu4613 -0.6 -4.6 glycosyltransferase compare
Atu5197 -0.6 -2.0 LysR family transcriptional regulator compare
Atu0767 -0.6 -2.2 cytochrome c oxidase subunit II compare
Atu4874 -0.6 -3.2 hypothetical protein compare
Atu5078 -0.6 -2.4 LacI family transcription regulator compare
Atu2802 -0.6 -3.2 precorrin-8X methylmutase compare
Atu0876 -0.6 -1.1 superoxide dismutase compare
Atu6103 -0.6 -3.0 plasmid partitioning protein compare
Atu5141 -0.6 -2.8 AraC family transcriptional regulator compare
Atu2127 -0.6 -3.8 L-carnitine dehydratase compare
Atu6197 -0.6 -1.5 agrocinopine phosphodiesterase compare
Atu4618 -0.6 -4.0 dTDP-rhamnose-3,5-epimerase compare
Atu0771 -0.6 -2.8 cytochrome c oxidase subunit III compare
Atu5447 -0.6 -2.4 zinc-binding oxidoreductase compare
Atu6133 -0.6 -1.1 conserved hypothetical protein compare
Atu4876 -0.5 -3.3 oxidoreductase compare
Atu1359 -0.5 -0.7 dnaK deletion suppressor protein compare
Atu3015 -0.5 -2.0 hypothetical protein compare
Atu2207 -0.5 -1.7 two component sensor kinase compare
Atu0025 -0.5 -1.1 hypothetical protein compare
Atu4614 -0.5 -3.6 glycosyltransferase compare
Atu4418 -0.5 -2.9 glutaryl-CoA dehydrogenase compare
Atu3036 -0.5 -2.8 dipeptide ABC transporter permease compare
Atu5173 -0.5 -0.7 dehydrogenase compare
Atu1028 -0.5 -1.7 hypothetical protein compare
Atu2442 -0.5 -1.0 hypothetical protein compare
Atu4873 -0.5 -2.3 TetR family transcriptional regulator compare
Atu3712 -0.5 -1.1 hypothetical protein compare
Atu1339 -0.5 -2.2 ribonuclease E compare
Atu0291 -0.5 -3.0 hypothetical protein compare
Atu5449 -0.5 -1.6 heat-shock protein compare
Atu4872 -0.5 -3.3 LysR family transcriptional regulator compare
Atu3121 -0.5 -0.8 cold shock protein compare
Atu3289 -0.5 -2.2 thiamine-phosphate pyrophosphorylase compare


Specific Phenotypes

For 3 genes in this experiment

For nitrogen source Urea in Agrobacterium fabrum C58

For nitrogen source Urea across organisms