Experiment set3IT008 for Pseudomonas simiae WCS417

Compare to:

L-Leucine carbon source

200 most important genes:

  gene name fitness t score description  
PS417_17565 -8.1 -5.2 branched-chain amino acid aminotransferase compare
PS417_23805 -7.9 -5.4 acetolactate synthase 3 regulatory subunit compare
PS417_07640 -7.3 -5.1 glyceraldehyde-3-phosphate dehydrogenase compare
PS417_25720 -7.1 -9.7 anthranilate synthase component II compare
PS417_04415 -7.0 -6.8 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PS417_04420 -6.6 -11.1 histidinol dehydrogenase compare
PS417_00185 -6.3 -4.4 tryptophan synthase subunit beta compare
PS417_18560 -6.2 -10.5 N-(5'-phosphoribosyl)anthranilate isomerase compare
PS417_24765 -6.2 -6.0 membrane protein compare
PS417_27040 -6.1 -3.3 3-phosphoglycerate dehydrogenase compare
PS417_01575 -6.1 -5.8 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PS417_02510 -6.0 -8.6 ATP phosphoribosyltransferase regulatory subunit compare
PS417_25725 -6.0 -15.1 anthranilate synthase component I compare
PS417_23800 -5.5 -11.2 ketol-acid reductoisomerase compare
PS417_24745 -5.4 -5.3 gamma-glutamyl phosphate reductase compare
PS417_01855 -5.3 -5.0 phosphoribosyl-AMP cyclohydrolase compare
PS417_23810 -5.3 -12.4 acetolactate synthase 3 catalytic subunit compare
PS417_25715 -5.3 -7.2 anthranilate phosphoribosyltransferase compare
PS417_27795 -5.0 -1.9 orotate phosphoribosyltransferase compare
PS417_16570 -4.9 -10.7 isocitrate lyase compare
PS417_23545 -4.8 -3.6 gamma-glutamyl kinase compare
PS417_17550 -4.8 -8.5 branched-chain alpha-ketoacid dehydrogenase, E1 component beta subunit (EC 1.2.4.4) (from data) conserved
PS417_23995 -4.7 -1.8 preprotein translocase subunit SecG compare
PS417_12855 -4.6 -6.9 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_01850 -4.6 -7.7 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PS417_16465 -4.5 -12.9 sirohydrochlorin ferrochelatase compare
PS417_01565 -4.4 -3.8 imidazole glycerol phosphate synthase compare
PS417_20125 -4.3 -5.8 phosphoribosylglycinamide formyltransferase compare
PS417_27195 -4.1 -2.2 N-acetylglutamate synthase compare
PS417_00180 -4.1 -4.5 tryptophan synthase subunit alpha compare
PS417_08125 -4.1 -2.2 prephenate dehydratase compare
PS417_26740 -3.9 -13.8 homoserine acetyltransferase compare
PS417_17015 -3.9 -8.9 Isovaleryl-CoA dehydrogenase (EC 1.3.8.4) (from data) conserved
PS417_18530 -3.7 -11.6 O-succinylhomoserine sulfhydrylase compare
PS417_20160 -3.7 -3.9 cysteine synthase compare
PS417_05595 -3.7 -6.6 ornithine carbamoyltransferase compare
PS417_01605 -3.6 -3.5 phosphoglycerate mutase compare
PS417_26730 -3.6 -1.9 pyrroline-5-carboxylate reductase compare
PS417_12290 -3.4 -7.2 sulfite reductase compare
PS417_01950 -3.4 -6.8 malate dehydrogenase compare
PS417_26040 -3.4 -3.8 malate synthase compare
PS417_17545 -3.4 -3.6 2-oxoisovalerate dehydrogenase compare
PS417_25710 -3.3 -2.5 indole-3-glycerol-phosphate synthase compare
PS417_24100 -3.3 -10.1 transcriptional regulator PdhR compare
PS417_02415 -3.0 -5.7 phosphoserine phosphatase compare
PS417_26995 -2.9 -11.5 phosphoserine phosphatase compare
PS417_01580 -2.8 -1.5 imidazole glycerol phosphate synthase compare
PS417_17560 -2.8 -5.9 Dihydrolipoyl dehydrogenase (EC 1.8.1.4) (from data) conserved
PS417_27875 -2.7 -8.4 histidine kinase compare
PS417_26745 -2.6 -4.7 methionine biosynthesis protein MetW compare
PS417_26005 -2.6 -8.5 biotin synthase compare
PS417_21750 -2.6 -18.7 acetyl-CoA synthetase compare
PS417_27815 -2.5 -3.0 hypothetical protein compare
PS417_27435 -2.5 -8.7 polyphosphate kinase compare
PS417_22520 -2.4 -3.4 histidine kinase compare
PS417_24155 -2.4 -3.4 ATP-binding protein compare
PS417_26890 -2.4 -3.4 dihydroxy-acid dehydratase compare
PS417_14940 -2.4 -3.6 LysR family transcriptional regulator compare
PS417_23770 -2.2 -4.3 exodeoxyribonuclease V subunit alpha compare
PS417_26985 -2.1 -6.1 phosphoenolpyruvate-protein phosphotransferase compare
PS417_09725 -2.0 -9.6 transporter compare
PS417_16990 -1.9 -6.2 acyl-CoA dehydrogenase compare
PS417_27035 -1.9 -7.2 FAD-linked oxidase compare
PS417_03730 -1.7 -6.8 phosphate acetyltransferase conserved
PS417_08730 -1.7 -3.2 cytochrome C compare
PS417_24835 -1.6 -6.1 hypothetical protein compare
PS417_01560 -1.6 -1.8 imidazoleglycerol-phosphate dehydratase compare
PS417_08230 -1.5 -2.0 lipopolysaccharide biosynthesis protein RfbH compare
PS417_09210 -1.5 -1.7 TetR family transcriptional regulator compare
PS417_01570 -1.5 -1.0 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase compare
PS417_22445 -1.5 -3.5 ATP-dependent DNA helicase RuvB compare
PS417_04180 -1.5 -5.1 GntR family transcriptional regulator compare
PS417_27835 -1.5 -7.3 endoribonuclease compare
PS417_08155 -1.5 -2.7 integration host factor subunit beta compare
PS417_03925 -1.5 -8.6 nicotinate-nucleotide pyrophosphorylase compare
PS417_07620 -1.4 -2.3 beta-hexosaminidase compare
PS417_01210 -1.4 -6.6 hypothetical protein compare
PS417_17420 -1.4 -6.2 ethanol oxidation regulatory protein ercA (from data) compare
PS417_22450 -1.4 -2.0 ATP-dependent DNA helicase RuvA compare
PS417_01710 -1.4 -3.8 histidine utilization repressor compare
PS417_20985 -1.4 -3.8 porin compare
PS417_17505 -1.4 -2.6 LuxR family transcriptional regulator compare
PS417_23725 -1.3 -2.4 methylmalonate-semialdehyde dehydrogenase compare
PS417_08225 -1.3 -4.1 acetolactate synthase compare
PS417_02560 -1.3 -2.0 23S rRNA methyltransferase compare
PS417_21125 -1.3 -4.7 phosphoadenosine phosphosulfate reductase compare
PS417_21510 -1.2 -2.1 histidine kinase compare
PS417_21000 -1.2 -1.5 CrfX protein compare
PS417_22570 -1.2 -1.4 H-NS histone compare
PS417_08580 -1.2 -6.8 histidine kinase compare
PS417_16510 -1.2 -4.0 Clp protease ClpX compare
PS417_20610 -1.2 -1.7 hypothetical protein compare
PS417_13510 -1.2 -1.6 polyketide cyclase compare
PS417_20665 -1.2 -5.8 hypothetical protein compare
PS417_28510 -1.2 -3.9 chromosome partitioning protein compare
PS417_21010 -1.2 -5.4 ribonuclease activity regulator protein RraA compare
PS417_08205 -1.2 -3.7 acetyltransferase compare
PS417_19720 -1.2 -1.7 DNA-binding protein compare
PS417_22385 -1.2 -7.5 quinolinate synthase A compare
PS417_11845 -1.1 -4.5 RpiR family transcriptional regulator compare
PS417_05570 -1.1 -4.2 DeoR faimly transcriptional regulator compare
PS417_12375 -1.1 -2.4 serine/threonine protein phosphatase compare
PS417_02805 -1.1 -1.4 urease subunit gamma compare
PS417_17485 -1.0 -5.6 membrane protein compare
PS417_10515 -1.0 -6.2 acetyl-CoA acetyltransferase compare
PS417_22565 -1.0 -1.4 formyltetrahydrofolate deformylase compare
PS417_06375 -1.0 -1.1 deoxycytidine triphosphate deaminase compare
PS417_09010 -1.0 -2.7 phosphohistidine phosphatase compare
PS417_22780 -1.0 -2.3 XRE family transcriptional regulator compare
PS417_19965 -1.0 -6.4 histidine kinase compare
PS417_21705 -1.0 -3.9 arginine N-succinyltransferase compare
PS417_10245 -1.0 -1.5 hypothetical protein compare
PS417_12730 -1.0 -1.7 glycosyltransferase compare
PS417_27910 -1.0 -1.8 PppA compare
PS417_04270 -1.0 -5.5 ribonuclease G compare
PS417_10520 -1.0 -4.0 succinyl-CoA:3-ketoacid-CoA transferase compare
PS417_02655 -1.0 -7.4 amino acid ABC transporter substrate-binding protein compare
PS417_17455 -1.0 -3.3 cytochrome C compare
PS417_14305 -0.9 -3.5 hydroxyproline-2-epimerase compare
PS417_08195 -0.9 -6.3 hypothetical protein compare
PS417_04595 -0.9 -2.8 cell division protein MraZ compare
PS417_27940 -0.9 -1.1 type VI secretion protein compare
PS417_22230 -0.9 -3.1 class I peptide chain release factor compare
PS417_15780 -0.9 -2.3 membrane protein compare
PS417_02660 -0.9 -7.0 branched-chain amino acid transporter permease subunit LivH compare
PS417_06605 -0.9 -5.1 leucine/isoleucine/valine transporter permease subunit compare
PS417_16195 -0.9 -1.1 AraC family transcriptional regulator compare
PS417_15135 -0.9 -1.7 hypothetical protein compare
PS417_25940 -0.9 -3.9 pyrroloquinoline quinone biosynthesis protein PqqE compare
PS417_11440 -0.9 -0.9 hypothetical protein compare
PS417_17415 -0.9 -2.1 histidine kinase compare
PS417_02670 -0.9 -2.8 ABC transporter compare
PS417_06615 -0.9 -5.0 ABC transporter for branched-chain amino acids, substrate-binding component (from data) compare
PS417_17480 -0.9 -4.3 branched-chain amino acid ABC transporter substrate-binding protein compare
PS417_22840 -0.9 -2.1 tRNA-Met compare
PS417_05905 -0.9 -2.4 hypothetical protein compare
PS417_24615 -0.9 -1.3 hypothetical protein compare
PS417_08540 -0.9 -2.6 RNA helicase compare
PS417_25930 -0.9 -5.1 pyrroloquinoline quinone biosynthesis protein PqqC compare
PS417_15465 -0.9 -2.2 carboxynorspermidine decarboxylase compare
PS417_06200 -0.8 -2.9 protein-PII uridylyltransferase compare
PS417_26990 -0.8 -1.2 RNA pyrophosphohydrolase compare
PS417_17495 -0.8 -2.8 multidrug ABC transporter permease compare
PS417_10535 -0.8 -3.0 hypothetical protein compare
PS417_04875 -0.8 -1.4 molybdenum cofactor biosynthesis protein MoaE compare
PS417_02720 -0.8 -0.8 TetR family transcriptional regulator compare
PS417_25650 -0.8 -3.6 anhydro-N-acetylmuramic acid kinase compare
PS417_22815 -0.8 -4.1 permease compare
PS417_02150 -0.8 -4.8 potassium/proton antiporter compare
PS417_25920 -0.8 -5.0 pyrroloquinoline quinone biosynthesis protein PqqF compare
PS417_08380 -0.8 -3.7 ABC transporter ATP-binding protein compare
PS417_26230 -0.8 -2.6 electron transfer flavoprotein subunit alpha compare
PS417_05540 -0.8 -3.1 histidine kinase compare
PS417_23775 -0.8 -1.1 exodeoxyribonuclease V subunit beta compare
PS417_27515 -0.8 -2.7 heme biosynthesis protein HemY compare
PS417_08365 -0.8 -1.0 hypothetical protein compare
PS417_20055 -0.8 -2.0 cob(II)yrinic acid a,c-diamide reductase compare
PS417_04910 -0.8 -3.5 amino acid ABC transporter permease compare
PS417_20580 -0.8 -5.6 isocitrate dehydrogenase compare
PS417_03560 -0.8 -1.4 GTP-binding protein compare
PS417_21210 -0.8 -2.4 amidotransferase compare
PS417_18690 -0.8 -1.6 aromatic amino acid aminotransferase compare
PS417_00295 -0.8 -5.1 hypothetical protein compare
PS417_08200 -0.8 -2.1 hypothetical protein compare
PS417_21090 -0.8 -1.3 hypothetical protein compare
PS417_08990 -0.8 -2.3 ABC transporter substrate-binding protein compare
PS417_02665 -0.8 -5.4 branched-chain amino acid ABC transporter permease compare
PS417_21655 -0.8 -0.8 aspartate kinase compare
PS417_22115 -0.7 -2.1 transcriptional regulator compare
PS417_06680 -0.7 -5.1 nuclease PIN compare
PS417_19520 -0.7 -1.9 transcriptional regulator compare
PS417_24115 -0.7 -1.5 hypothetical protein compare
PS417_09245 -0.7 -1.6 recombinase RdgC compare
PS417_15710 -0.7 -2.1 nitrate reductase compare
PS417_10275 -0.7 -1.0 histidine kinase compare
PS417_16555 -0.7 -1.3 cupin compare
PS417_14515 -0.7 -1.5 acetylglucosaminylphosphatidylinositol deacetylase compare
PS417_13140 -0.7 -1.7 oxidoreductase compare
PS417_17240 -0.7 -2.8 trigger factor compare
PS417_06620 -0.7 -2.0 hypothetical protein compare
PS417_26000 -0.7 -3.7 8-amino-7-oxononanoate synthase compare
PS417_17450 -0.7 -2.5 amino acid ABC transporter substrate-binding protein compare
PS417_18425 -0.7 -0.8 sporulation protein compare
PS417_02425 -0.7 -2.9 thiosulfate sulfurtransferase compare
PS417_14530 -0.7 -3.6 acetylglucosaminylphosphatidylinositol deacetylase compare
PS417_28070 -0.7 -3.1 phosphate ABC transporter ATP-binding protein compare
PS417_17435 -0.7 -4.2 dehydrogenase compare
PS417_05695 -0.7 -2.9 transcriptional regulator compare
PS417_15935 -0.7 -1.4 Rrf2 family transcriptional regulator compare
PS417_27585 -0.7 -1.0 diaminopimelate epimerase compare
PS417_18825 -0.7 -2.9 TetR family transcriptional regulator compare
PS417_00085 -0.7 -2.0 16S rRNA methyltransferase compare
PS417_23915 -0.7 -2.1 pantoate--beta-alanine ligase compare
PS417_17630 -0.7 -2.0 RNA polymerase sigma factor compare
PS417_23475 -0.7 -1.2 hypothetical protein compare
PS417_26250 -0.6 -2.2 peptidase M19 compare
PS417_07770 -0.6 -1.5 hypothetical protein compare
PS417_28515 -0.6 -1.2 16S rRNA methyltransferase compare
PS417_22775 -0.6 -3.8 histidine kinase compare
PS417_10640 -0.6 -2.7 GNAT family acetyltransferase compare


Specific Phenotypes

For 6 genes in this experiment

For carbon source L-Leucine in Pseudomonas simiae WCS417

For carbon source L-Leucine across organisms