Experiment set3IT007 for Pseudomonas simiae WCS417

Compare to:

L-Isoleucine carbon source

200 most important genes:

  gene name fitness t score description  
PS417_18600 -7.9 -5.3 isopropylmalate isomerase compare
PS417_28220 -7.2 -4.9 LysR family transcriptional regulator compare
PS417_13180 -6.7 -8.7 AraC family transcriptional regulator conserved
PS417_04415 -6.6 -7.8 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PS417_17565 -6.5 -5.6 branched-chain amino acid aminotransferase compare
PS417_18560 -6.4 -10.3 N-(5'-phosphoribosyl)anthranilate isomerase compare
PS417_17550 -6.3 -6.1 branched-chain alpha-ketoacid dehydrogenase, E1 component beta subunit (EC 1.2.4.4) (from data) conserved
PS417_23110 -6.1 -13.6 2-isopropylmalate synthase compare
PS417_07640 -6.0 -4.8 glyceraldehyde-3-phosphate dehydrogenase compare
PS417_26740 -5.9 -12.0 homoserine acetyltransferase compare
PS417_01575 -5.9 -7.7 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PS417_25720 -5.9 -8.6 anthranilate synthase component II compare
PS417_23805 -5.8 -6.2 acetolactate synthase 3 regulatory subunit compare
PS417_23545 -5.8 -4.0 gamma-glutamyl kinase compare
PS417_23800 -5.8 -11.1 ketol-acid reductoisomerase compare
PS417_16465 -5.8 -11.1 sirohydrochlorin ferrochelatase compare
PS417_18585 -5.7 -7.9 3-isopropylmalate dehydrogenase compare
PS417_01565 -5.7 -6.7 imidazole glycerol phosphate synthase compare
PS417_25725 -5.7 -14.7 anthranilate synthase component I compare
PS417_13850 -5.7 -5.5 2-methylbutanoyl-CoA dehydrogenase (EC 1.3.8.5) (from data) conserved
PS417_04420 -5.6 -12.0 histidinol dehydrogenase compare
PS417_00180 -5.4 -3.7 tryptophan synthase subunit alpha compare
PS417_24745 -5.3 -5.1 gamma-glutamyl phosphate reductase compare
PS417_18530 -5.0 -5.8 O-succinylhomoserine sulfhydrylase compare
PS417_17560 -4.9 -5.8 Dihydrolipoyl dehydrogenase (EC 1.8.1.4) (from data) conserved
PS417_23810 -4.9 -10.0 acetolactate synthase 3 catalytic subunit compare
PS417_00185 -4.8 -4.7 tryptophan synthase subunit beta compare
PS417_27040 -4.8 -5.5 3-phosphoglycerate dehydrogenase compare
PS417_20125 -4.8 -4.8 phosphoribosylglycinamide formyltransferase compare
PS417_01850 -4.8 -4.5 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PS417_23995 -4.6 -1.8 preprotein translocase subunit SecG compare
PS417_01855 -4.6 -4.9 phosphoribosyl-AMP cyclohydrolase compare
PS417_05595 -4.6 -8.5 ornithine carbamoyltransferase compare
PS417_13855 -4.5 -2.5 acetyl-CoA acetyltransferase compare
PS417_02510 -4.5 -3.3 ATP phosphoribosyltransferase regulatory subunit compare
PS417_12290 -4.5 -11.9 sulfite reductase compare
PS417_16570 -4.2 -10.6 isocitrate lyase compare
PS417_27195 -4.0 -2.1 N-acetylglutamate synthase compare
PS417_27435 -4.0 -9.6 polyphosphate kinase compare
PS417_25710 -4.0 -2.2 indole-3-glycerol-phosphate synthase compare
PS417_18595 -3.8 -3.8 3-isopropylmalate dehydratase compare
PS417_21070 -3.8 -3.2 aconitate hydratase compare
PS417_26040 -3.8 -4.2 malate synthase compare
PS417_12855 -3.7 -6.5 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_17545 -3.6 -3.6 2-oxoisovalerate dehydrogenase compare
PS417_27795 -3.5 -2.0 orotate phosphoribosyltransferase compare
PS417_26730 -3.5 -1.9 pyrroline-5-carboxylate reductase compare
PS417_26995 -3.5 -11.5 phosphoserine phosphatase compare
PS417_02415 -3.4 -8.4 phosphoserine phosphatase compare
PS417_27135 -3.3 -1.8 glutamine synthetase compare
PS417_25715 -3.3 -4.3 anthranilate phosphoribosyltransferase compare
PS417_22520 -3.2 -4.7 histidine kinase compare
PS417_20160 -3.2 -3.9 cysteine synthase compare
PS417_21065 -3.2 -4.2 3-methylitaconate isomerase compare
PS417_26745 -3.2 -3.3 methionine biosynthesis protein MetW compare
PS417_24155 -3.1 -4.6 ATP-binding protein compare
PS417_26890 -3.0 -4.3 dihydroxy-acid dehydratase compare
PS417_08230 -2.8 -3.0 lipopolysaccharide biosynthesis protein RfbH compare
PS417_01605 -2.8 -3.2 phosphoglycerate mutase compare
PS417_01580 -2.7 -1.5 imidazole glycerol phosphate synthase compare
PS417_01560 -2.7 -3.4 imidazoleglycerol-phosphate dehydratase compare
PS417_23775 -2.5 -2.7 exodeoxyribonuclease V subunit beta compare
PS417_08155 -2.3 -3.8 integration host factor subunit beta compare
PS417_21275 -2.2 -11.3 GntR family transcriptional regulator conserved
PS417_22385 -2.2 -9.2 quinolinate synthase A compare
PS417_08125 -2.2 -2.0 prephenate dehydratase compare
PS417_03925 -2.0 -8.3 nicotinate-nucleotide pyrophosphorylase compare
PS417_06375 -2.0 -1.6 deoxycytidine triphosphate deaminase compare
PS417_24765 -2.0 -6.2 membrane protein compare
PS417_23770 -1.9 -3.3 exodeoxyribonuclease V subunit alpha compare
PS417_11430 -1.9 -9.2 EamA compare
PS417_22570 -1.8 -1.7 H-NS histone compare
PS417_01210 -1.8 -8.8 hypothetical protein compare
PS417_16990 -1.8 -7.3 acyl-CoA dehydrogenase compare
PS417_08245 -1.8 -1.6 CDP-6-deoxy-L-threo-D-glycero-4-hexulose-3- dehydrase reductase compare
PS417_24835 -1.7 -5.2 hypothetical protein compare
PS417_26990 -1.7 -1.9 RNA pyrophosphohydrolase compare
PS417_04180 -1.7 -5.9 GntR family transcriptional regulator compare
PS417_01570 -1.6 -1.8 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase compare
PS417_08220 -1.6 -1.3 epimerase compare
PS417_22450 -1.5 -2.0 ATP-dependent DNA helicase RuvA compare
PS417_10535 -1.5 -5.9 hypothetical protein compare
PS417_08205 -1.5 -4.2 acetyltransferase compare
PS417_27875 -1.5 -9.5 histidine kinase compare
PS417_15935 -1.5 -2.9 Rrf2 family transcriptional regulator compare
PS417_18690 -1.4 -3.4 aromatic amino acid aminotransferase compare
PS417_27610 -1.4 -3.7 hypothetical protein compare
PS417_01710 -1.4 -6.3 histidine utilization repressor compare
PS417_23950 -1.4 -2.7 polynucleotide phosphorylase/polyadenylase compare
PS417_04365 -1.4 -1.7 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase compare
PS417_23105 -1.4 -2.1 hypothetical protein compare
PS417_21750 -1.4 -10.4 acetyl-CoA synthetase compare
PS417_08195 -1.3 -7.3 hypothetical protein compare
PS417_04860 -1.3 -6.1 ATPase compare
PS417_18730 -1.3 -4.1 ABC transporter permease compare
PS417_28515 -1.3 -2.2 16S rRNA methyltransferase compare
PS417_09245 -1.3 -2.1 recombinase RdgC compare
PS417_21705 -1.2 -4.8 arginine N-succinyltransferase compare
PS417_12730 -1.2 -1.9 glycosyltransferase compare
PS417_09210 -1.2 -2.6 TetR family transcriptional regulator compare
PS417_27605 -1.2 -5.7 hypothetical protein compare
PS417_19065 -1.2 -1.3 monooxygenase compare
PS417_05570 -1.2 -5.1 DeoR faimly transcriptional regulator compare
PS417_21125 -1.2 -5.4 phosphoadenosine phosphosulfate reductase compare
PS417_08225 -1.2 -4.5 acetolactate synthase compare
PS417_06145 -1.1 -1.3 hypothetical protein compare
PS417_17000 -1.1 -3.3 MerR family transcriptional regulator compare
PS417_09010 -1.1 -3.4 phosphohistidine phosphatase compare
PS417_20985 -1.1 -3.2 porin compare
PS417_11845 -1.1 -3.5 RpiR family transcriptional regulator compare
PS417_06200 -1.0 -3.7 protein-PII uridylyltransferase compare
PS417_17495 -1.0 -4.6 multidrug ABC transporter permease compare
PS417_22445 -1.0 -3.2 ATP-dependent DNA helicase RuvB compare
PS417_16715 -1.0 -1.7 DoxX family protein compare
PS417_08200 -1.0 -2.9 hypothetical protein compare
PS417_09150 -1.0 -2.3 energy transducer TonB compare
PS417_13305 -1.0 -1.1 hypothetical protein compare
PS417_08320 -0.9 -1.5 metal-chelation protein CHAD compare
PS417_12840 -0.9 -2.8 TetR family transcriptional regulator compare
PS417_13510 -0.9 -1.3 polyketide cyclase compare
PS417_08380 -0.9 -4.2 ABC transporter ATP-binding protein compare
PS417_26005 -0.9 -5.8 biotin synthase compare
PS417_26145 -0.9 -1.8 hypothetical protein compare
PS417_06045 -0.9 -1.2 membrane protein compare
PS417_23095 -0.9 -1.1 exodeoxyribonuclease compare
PS417_06710 -0.9 -1.5 beta-ketoadipyl CoA thiolase compare
PS417_19520 -0.9 -3.2 transcriptional regulator compare
PS417_10995 -0.9 -2.3 GntR family transcriptional regulator compare
PS417_27815 -0.9 -1.1 hypothetical protein compare
PS417_03310 -0.9 -3.9 carbonate dehydratase compare
PS417_27110 -0.9 -3.4 spermidine/putrescine ABC transporter permease compare
PS417_09915 -0.9 -1.2 hypothetical protein compare
PS417_08435 -0.9 -1.4 pilus assembly protein PilZ compare
PS417_21510 -0.9 -1.4 histidine kinase compare
PS417_11160 -0.9 -2.2 6-aminohexanoate hydrolase compare
PS417_20620 -0.8 -2.8 glycosyl transferase family 2 compare
PS417_23475 -0.8 -1.5 hypothetical protein compare
PS417_00195 -0.8 -2.0 hypothetical protein compare
PS417_07995 -0.8 -4.3 LOG family protein compare
PS417_19425 -0.8 -0.9 allantoicase compare
PS417_20170 -0.8 -2.9 hypothetical protein compare
PS417_08135 -0.8 -3.2 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_26175 -0.8 -1.0 sarcosine oxidase subunit gamma compare
PS417_19705 -0.8 -1.5 flagellar biosynthesis regulator FlhF compare
PS417_18590 -0.8 -1.7 SAM-dependent methyltransferase compare
PS417_05985 -0.8 -3.3 chemotaxis protein CheY compare
PS417_11445 -0.8 -2.1 enoyl-CoA hydratase compare
PS417_14240 -0.8 -1.8 isochorismatase compare
PS417_08130 -0.8 -1.6 aspartate aminotransferase compare
PS417_17485 -0.8 -2.9 membrane protein compare
PS417_28510 -0.8 -3.7 chromosome partitioning protein compare
PS417_21255 -0.8 -2.6 hypothetical protein compare
PS417_14070 -0.8 -1.0 hypothetical protein compare
PS417_11435 -0.8 -3.1 asparagine synthase compare
PS417_17480 -0.8 -3.6 branched-chain amino acid ABC transporter substrate-binding protein compare
PS417_12520 -0.8 -1.2 hypothetical protein compare
PS417_12735 -0.8 -1.6 peroxidase compare
PS417_20610 -0.8 -1.2 hypothetical protein compare
PS417_07620 -0.8 -1.9 beta-hexosaminidase compare
PS417_11510 -0.7 -1.4 AraC family transcriptional regulator compare
PS417_04315 -0.7 -3.1 superoxide dismutase compare
PS417_17350 -0.7 -2.5 copper resistance protein CopD compare
PS417_19675 -0.7 -3.2 chemotaxis protein CheY compare
PS417_15325 -0.7 -1.1 type VI secretion protein compare
PS417_20665 -0.7 -3.9 hypothetical protein compare
PS417_21210 -0.7 -2.5 amidotransferase compare
PS417_07245 -0.7 -1.9 2-deoxy-D-ribonate 3-dehydrogenase (from data) compare
PS417_24100 -0.7 -3.5 transcriptional regulator PdhR compare
PS417_12565 -0.7 -2.8 2-dehydro-3-deoxygluconokinase compare
PS417_01180 -0.7 -3.1 ribosomal protein S6 modification protein compare
PS417_27690 -0.7 -2.2 XRE family transcriptional regulator compare
PS417_27490 -0.7 -1.4 hypothetical protein compare
PS417_19965 -0.7 -5.1 histidine kinase compare
PS417_18060 -0.7 -1.5 general secretion pathway protein GspJ compare
PS417_05540 -0.7 -3.5 histidine kinase compare
PS417_08730 -0.7 -1.6 cytochrome C compare
PS417_11405 -0.7 -1.8 precorrin 6A synthase compare
PS417_17420 -0.7 -1.8 ethanol oxidation regulatory protein ercA (from data) compare
PS417_21655 -0.7 -1.2 aspartate kinase compare
PS417_02225 -0.7 -1.8 bifunctional glutamine-synthetase adenylyltransferase/deadenyltransferase compare
PS417_02670 -0.7 -2.4 ABC transporter compare
PS417_18780 -0.7 -1.1 flavin reductase compare
PS417_17890 -0.7 -3.0 3-oxoacyl-ACP reductase compare
PS417_11450 -0.7 -1.3 AraC family transcriptional regulator compare
PS417_23915 -0.7 -2.2 pantoate--beta-alanine ligase compare
PS417_02675 -0.7 -2.6 ABC transporter ATP-binding protein compare
PS417_17435 -0.7 -3.8 dehydrogenase compare
PS417_27035 -0.7 -1.8 FAD-linked oxidase compare
PS417_05825 -0.7 -3.0 cytochrome D ubiquinol oxidase subunit II compare
PS417_13425 -0.7 -2.0 cupin compare
PS417_04875 -0.7 -1.2 molybdenum cofactor biosynthesis protein MoaE compare
PS417_06895 -0.7 -2.1 DNA-binding protein compare
PS417_20340 -0.7 -1.9 hypothetical protein compare
PS417_24585 -0.7 -4.5 AMP nucleosidase compare
PS417_07195 -0.7 -2.3 hypothetical protein compare
PS417_24265 -0.7 -3.3 ABC transporter ATP-binding protein compare
PS417_05850 -0.7 -3.3 LysR family transcriptional regulator compare
PS417_17455 -0.7 -2.4 cytochrome C compare
PS417_08545 -0.7 -1.3 aromatic ring-opening dioxygenase LigB compare
PS417_24570 -0.7 -3.2 AsnC family transcriptional regulator compare


Specific Phenotypes

For 7 genes in this experiment

For carbon source L-Isoleucine in Pseudomonas simiae WCS417

For carbon source L-Isoleucine across organisms