Experiment set3IT007 for Pontibacter actiniarum KMM 6156, DSM 19842

Compare to:

marine broth with Lomefloxacin hydrochloride 0.002 mM

200 most detrimental genes:

  gene name fitness t score description  
CA264_19005 +1.5 12.4 SusC/RagA family TonB-linked outer membrane protein compare
CA264_03635 +1.5 8.8 DoxX family protein compare
CA264_19925 +1.3 7.9 peptidyl-prolyl cis-trans isomerase compare
CA264_12400 +1.2 9.0 hypothetical protein compare
CA264_03640 +1.2 3.4 TetR family transcriptional regulator compare
CA264_12355 +1.2 7.4 polysaccharide deacetylase compare
CA264_12370 +1.1 9.7 hypothetical protein compare
CA264_12365 +1.1 9.7 asparagine synthetase B compare
CA264_12405 +1.0 8.3 hypothetical protein compare
CA264_12350 +1.0 7.4 glycosyltransferase family 1 protein compare
CA264_17915 +1.0 2.8 LPS biosynthesis protein WbpP compare
CA264_07185 +0.9 5.9 TetR family transcriptional regulator compare
CA264_12375 +0.9 6.7 hypothetical protein compare
CA264_12325 +0.9 6.8 polysaccharide biosynthesis protein compare
CA264_12385 +0.9 6.6 glycosyl transferase compare
CA264_14815 +0.9 2.3 transcriptional regulator compare
CA264_08220 +0.8 5.0 hypothetical protein compare
CA264_20950 +0.8 1.5 hypothetical protein compare
CA264_15670 +0.7 1.3 DUF4295 domain-containing protein compare
CA264_06345 +0.7 6.2 hypothetical protein compare
CA264_06180 +0.7 4.8 pseudouridylate synthase compare
CA264_01990 +0.7 2.2 tRNA-Lys compare
CA264_03870 +0.7 2.3 transcription elongation factor GreA compare
CA264_01790 +0.7 2.4 hypothetical protein compare
CA264_13470 +0.6 0.8 cysteine synthase A compare
CA264_02880 +0.6 1.4 hypothetical protein compare
CA264_15650 +0.6 2.4 hypothetical protein compare
CA264_11890 +0.6 1.7 NADH oxidase compare
CA264_09285 +0.6 3.0 anti-anti-sigma factor compare
CA264_20845 +0.6 1.0 hypothetical protein compare
CA264_07245 +0.6 3.2 hypothetical protein compare
CA264_03285 +0.6 1.0 hypothetical protein compare
CA264_14200 +0.6 1.2 NADH-quinone oxidoreductase subunit A compare
CA264_03905 +0.6 2.9 polysaccharide deacetylase family protein compare
CA264_13025 +0.6 1.5 hypothetical protein compare
CA264_18060 +0.6 3.8 hypothetical protein compare
CA264_15235 +0.6 3.9 hypothetical protein compare
CA264_12390 +0.6 4.5 hypothetical protein compare
CA264_21440 +0.5 2.3 metal transporter compare
CA264_04460 +0.5 1.6 ABC transporter compare
CA264_06185 +0.5 2.9 hypothetical protein compare
CA264_11665 +0.5 2.4 DDE transposase compare
CA264_21445 +0.5 1.9 metal transporter compare
CA264_09245 +0.5 3.1 hypothetical protein compare
CA264_19085 +0.5 3.5 RNA polymerase subunit sigma-24 compare
CA264_00325 +0.5 1.9 hypothetical protein compare
CA264_05535 +0.5 3.7 hypothetical protein compare
CA264_12710 +0.5 1.8 SAM-dependent methyltransferase compare
CA264_00660 +0.5 3.4 hypothetical protein compare
CA264_17180 +0.5 3.0 hypothetical protein compare
CA264_18055 +0.5 3.9 hypothetical protein compare
CA264_15850 +0.5 2.8 IclR family transcriptional regulator compare
CA264_03625 +0.5 3.5 proline iminopeptidase compare
CA264_19895 +0.5 2.5 phosphoribosyltransferase compare
CA264_04475 +0.5 1.1 cold-shock protein compare
CA264_18270 +0.5 0.9 hypothetical protein compare
CA264_17565 +0.5 0.9 hypothetical protein compare
CA264_14560 +0.5 1.0 VanZ family protein compare
CA264_08860 +0.5 1.1 hypothetical protein compare
CA264_13020 +0.5 1.8 hypothetical protein compare
CA264_11215 +0.5 2.6 N-acetyltransferase compare
CA264_02595 +0.5 1.7 oxidoreductase compare
CA264_11620 +0.5 3.7 hypothetical protein compare
CA264_12280 +0.5 1.2 hypothetical protein compare
CA264_09820 +0.5 1.8 hypothetical protein compare
CA264_04385 +0.5 1.5 hypothetical protein compare
CA264_08665 +0.5 1.8 N-acetylmuramoyl-L-alanine amidase compare
CA264_08225 +0.5 3.3 zinc-binding oxidoreductase compare
CA264_06260 +0.5 2.9 N-acetyltransferase compare
CA264_03630 +0.4 3.5 PAS domain-containing sensor histidine kinase compare
CA264_10170 +0.4 2.6 endonuclease compare
CA264_02665 +0.4 2.3 hypothetical protein compare
CA264_04285 +0.4 1.3 hypothetical protein compare
CA264_03855 +0.4 3.1 magnesium transporter compare
CA264_02055 +0.4 0.5 hypothetical protein compare
CA264_10535 +0.4 1.1 cyclic pyranopterin monophosphate synthase MoaC compare
CA264_03670 +0.4 1.8 polyisoprenoid-binding protein compare
CA264_09730 +0.4 1.8 hypothetical protein compare
CA264_19245 +0.4 2.6 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit compare
CA264_00015 +0.4 2.4 hypothetical protein compare
CA264_20095 +0.4 1.3 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB compare
CA264_04150 +0.4 1.9 hypothetical protein compare
CA264_03300 +0.4 1.5 hypothetical protein compare
CA264_09445 +0.4 2.6 3-isopropylmalate dehydrogenase compare
CA264_01605 +0.4 2.8 arginase compare
CA264_19010 +0.4 3.2 SusD/RagB family nutrient-binding outer membrane lipoprotein compare
CA264_16565 +0.4 2.0 hypothetical protein compare
CA264_02480 +0.4 2.1 3-dehydroquinate synthase compare
CA264_14920 +0.4 2.2 hypothetical protein compare
CA264_00085 +0.4 1.5 hypothetical protein compare
CA264_13085 +0.4 2.6 methylmalonyl-CoA carboxyltransferase compare
CA264_18665 +0.4 1.9 prenyltransferase compare
CA264_16440 +0.4 1.3 hypothetical protein compare
CA264_20330 +0.4 2.1 hypothetical protein compare
CA264_17905 +0.4 2.5 UDP-glucose 4-epimerase GalE compare
CA264_09240 +0.4 2.5 aldehyde dehydrogenase compare
CA264_06990 +0.4 3.0 PA-phosphatase compare
CA264_21300 +0.4 0.7 hypothetical protein compare
CA264_21225 +0.4 1.1 hypothetical protein compare
CA264_14580 +0.4 1.2 hypothetical protein compare
CA264_08925 +0.4 2.2 23S rRNA pseudouridine synthase F compare
CA264_07195 +0.4 1.0 hypothetical protein compare
CA264_19955 +0.4 1.7 SAM-dependent methyltransferase compare
CA264_15880 +0.4 1.0 5-formyltetrahydrofolate cyclo-ligase compare
CA264_05185 +0.4 1.1 hypothetical protein compare
CA264_07635 +0.4 2.3 SOS mutagenesis and repair protein UmuC compare
CA264_06400 +0.4 3.1 hypothetical protein compare
CA264_03590 +0.4 1.0 hypothetical protein compare
CA264_16870 +0.4 2.3 N-acetyltransferase compare
CA264_08530 +0.4 1.6 hypothetical protein compare
CA264_10045 +0.4 1.5 hypothetical protein compare
CA264_04075 +0.4 1.8 hypothetical protein compare
CA264_06405 +0.4 3.0 VWA domain-containing protein compare
CA264_20570 +0.4 0.6 inorganic pyrophosphatase compare
CA264_05040 +0.4 1.7 bifunctional imidazole glycerol-phosphate dehydratase/histidinol phosphatase compare
CA264_18105 +0.4 1.6 hypothetical protein compare
CA264_14995 +0.4 1.6 A/G-specific adenine glycosylase compare
CA264_17935 +0.4 2.2 hypothetical protein compare
CA264_02305 +0.4 1.2 LuxR family transcriptional regulator compare
CA264_17640 +0.4 2.1 acyl-CoA dehydrogenase compare
CA264_14190 +0.3 1.4 hypothetical protein compare
CA264_06600 +0.3 2.8 glycosyltransferase compare
CA264_12345 +0.3 1.7 lipid carrier--UDP-N-acetylgalactosaminyltransferase compare
CA264_07005 +0.3 2.7 CDP-diacylglycerol--inositol 3-phosphatidyltransferase compare
CA264_12010 +0.3 1.7 ATP-binding protein compare
CA264_11995 +0.3 1.1 hypothetical protein compare
CA264_18165 +0.3 2.4 S1/P1 Nuclease compare
CA264_08305 +0.3 1.3 OsmC family peroxiredoxin compare
CA264_07735 +0.3 0.8 hypothetical protein compare
CA264_16200 +0.3 1.2 hypothetical protein compare
CA264_14755 +0.3 1.9 hypothetical protein compare
CA264_14765 +0.3 2.4 hypothetical protein compare
CA264_00190 +0.3 2.7 RagB/SusD family nutrient uptake outer membrane protein compare
CA264_15255 +0.3 1.5 alpha/beta hydrolase compare
CA264_04895 +0.3 2.5 peptidase M23 compare
CA264_07335 +0.3 1.2 transcriptional regulator compare
CA264_02425 +0.3 2.3 biotin synthase BioB compare
CA264_16710 +0.3 1.3 transcriptional regulator compare
CA264_03370 +0.3 1.7 hypothetical protein compare
CA264_10920 +0.3 2.5 helix-turn-helix-type transcriptional regulator compare
CA264_19630 +0.3 1.8 hypothetical protein compare
CA264_18080 +0.3 1.7 hypothetical protein compare
CA264_21020 +0.3 2.3 conjugative transposon protein TraM compare
CA264_17925 +0.3 1.9 chromate transporter compare
CA264_06530 +0.3 1.4 peptidase compare
CA264_18865 +0.3 2.1 monooxygenase compare
CA264_03890 +0.3 2.1 family 2 glycosyl transferase compare
CA264_15325 +0.3 2.8 hypothetical protein compare
CA264_04145 +0.3 1.4 hypothetical protein compare
CA264_16330 +0.3 1.5 hypothetical protein compare
CA264_09935 +0.3 1.3 conjugative transposon protein TraN compare
CA264_18075 +0.3 2.2 3-dehydro-L-gulonate 2-dehydrogenase compare
CA264_13560 +0.3 0.7 membrane protein insertion efficiency factor YidD compare
CA264_02130 +0.3 1.2 pseudouridine synthase compare
CA264_14740 +0.3 1.7 dihydroorotase compare
CA264_03985 +0.3 1.5 hypothetical protein compare
CA264_15950 +0.3 0.9 hypothetical protein compare
CA264_01425 +0.3 2.5 RelA/SpoT family protein compare
CA264_12790 +0.3 1.6 hypothetical protein compare
CA264_13165 +0.3 1.4 arylesterase compare
CA264_14475 +0.3 1.6 hypothetical protein compare
CA264_11465 +0.3 1.4 transcriptional regulator compare
CA264_14020 +0.3 2.2 hypothetical protein compare
CA264_10940 +0.3 1.8 phenylacetate-CoA oxygenase subunit PaaA compare
CA264_21460 +0.3 0.6 hypothetical protein compare
CA264_05885 +0.3 1.8 hypothetical protein compare
CA264_01145 +0.3 1.5 dienelactone hydrolase compare
CA264_06470 +0.3 1.6 YfcE family phosphodiesterase compare
CA264_21335 +0.3 0.5 hypothetical protein compare
CA264_07860 +0.3 2.1 SAM-dependent methyltransferase compare
CA264_08140 +0.3 1.1 oxidoreductase compare
CA264_18860 +0.3 2.0 TIGR00374 family protein compare
CA264_16390 +0.3 1.4 hypothetical protein compare
CA264_00405 +0.3 1.0 transcriptional repressor compare
CA264_05930 +0.3 1.1 glyoxalase compare
CA264_20690 +0.3 2.3 methylmalonyl-CoA mutase compare
CA264_09740 +0.3 0.7 hypothetical protein compare
CA264_15930 +0.3 1.6 thiol reductase thioredoxin compare
CA264_17500 +0.3 1.3 molecular chaperone DnaK compare
CA264_13825 +0.3 0.7 hypothetical protein compare
CA264_06095 +0.3 0.5 hypothetical protein compare
CA264_04295 +0.3 1.9 hypothetical protein compare
CA264_06190 +0.3 2.1 molecular chaperone DnaJ compare
CA264_06465 +0.3 1.7 orotate phosphoribosyltransferase compare
CA264_09235 +0.3 2.1 short-chain dehydrogenase compare
CA264_16015 +0.3 1.4 DNA-binding protein compare
CA264_05655 +0.3 1.9 FAD-binding protein compare
CA264_12940 +0.3 1.7 alcohol dehydrogenase compare
CA264_03995 +0.3 1.4 hypothetical protein compare
CA264_14150 +0.3 1.3 hypothetical protein compare
CA264_13675 +0.3 1.5 GntR family transcriptional regulator compare
CA264_01995 +0.3 1.8 SH3 domain-containing protein compare
CA264_10185 +0.3 1.1 hypothetical protein compare
CA264_13620 +0.3 1.7 RNA polymerase subunit sigma compare
CA264_16470 +0.3 1.5 hypothetical protein compare
CA264_17560 +0.3 2.1 hypothetical protein compare
CA264_09375 +0.3 0.8 transcriptional regulator compare
CA264_02910 +0.3 1.1 hypothetical protein compare
CA264_03610 +0.3 1.4 hypothetical protein compare
CA264_16865 +0.3 1.6 hypothetical protein compare


Specific Phenotypes

None in this experiment

For Pontibacter actiniarum KMM 6156, DSM 19842 in stress experiments

For stress Lomefloxacin hydrochloride across organisms