Experiment set3IT007 for Agrobacterium fabrum C58

Compare to:

Sodium nitrate nitrogen source

200 most important genes:

  gene name fitness t score description  
Atu0017 -6.0 -4.1 N-(5-phosphoribosyl) anthranilate isomerase compare
Atu3707 -5.7 -5.5 phosphoserine aminotransferase compare
Atu3706 -5.4 -11.6 D-3-phosphoglycerate dehydrogenase compare
Atu1445 -5.2 -8.6 two component sensor kinase compare
Atu0346 -5.0 -5.8 uridylyltransferase/uridylyl-removing enzyme UTase compare
Atu0043 -4.6 -4.4 imidazoleglycerol-phosphate dehydratase compare
Atu2791 -4.6 -12.5 3-isopropylmalate dehydrogenase compare
Atu3739 -4.6 -4.5 phosphoglycerate kinase compare
Atu0041 -4.5 -4.4 glutamine amidotransferase compare
Atu1687 -4.3 -11.2 anthranilate phosphoribosyltransferase compare
Atu2790 -4.2 -3.9 3-isopropylmalate dehydratase, small subunit compare
Atu1030 -4.0 -3.6 GTP pyrophosphohydrolase/synthetase, RelA/SpoT family compare
Atu0679 -3.9 -7.0 ATP phosphoribosyltransferase compare
Atu0099 -3.9 -13.3 prephenate dehydratase compare
Atu3740 -3.9 -10.5 fructose bisphosphate aldolase compare
Atu0035 -3.9 -10.7 phosphoenolpyruvate carboxykinase compare
Atu0678 -3.9 -8.2 histidyl-tRNA synthetase compare
Atu1688 -3.8 -9.3 indole-3-glycerol-phosphate synthase compare
Atu3469 -3.7 -4.1 phosphoglyceromutase compare
Atu4505 -3.7 -10.6 LacI family transcriptional regulator compare
Atu2709 -3.6 -18.9 3-isopropylmalate dehydratase, large subunit compare
Atu1446 -3.6 -3.1 two component response regulator compare
Atu0039 -3.5 -3.2 imidazoleglycerol-phosphate synthase cyclase compare
Atu2650 -3.4 -16.1 glycerol-3-phosphate dehydrogenase compare
Atu2036 -3.4 -16.6 acetolactate synthase III, large subunit compare
Atu0332 -3.4 -15.2 RNA polymerase sigma-54 factor compare
Atu2289 -3.4 -21.9 anthranilate synthase component I and II compare
Atu2264 -3.4 -14.2 2-isopropylmalate synthase compare
Atu1750 -3.4 -10.2 phosphoribosyl c-AMP cyclohydrolase compare
Atu0537 -3.2 -9.4 histidinol dehydrogenase compare
Atu1620 -3.2 -13.2 triosephosphate isomerase compare
Atu2040 -3.2 -4.5 phosphoserine phosphatase compare
Atu0038 -3.1 -4.9 phosphoribosyl-ATP pyrophosphohydrolase compare
Atu3901 -3.0 -11.9 nitrite reductase small subunit conserved
Atu0040 -3.0 -1.7 phosphoribosylformino-5-aminoimidazole carboxamide ribotide isomerase compare
Atu3902 -3.0 -21.4 nitrite reductase large subunit conserved
Atu3754 -2.9 -11.5 phosphoribosylaminoimidazole carboxylase catalytic subunit compare
Atu1588 -2.9 -10.6 homoserine dehydrogenase compare
Atu3904 -2.9 -14.0 nitrate ABC transporter permease compare
Atu1844 -2.9 -5.1 Phosphoribosylformylglycinamidine synthetase compare
Atu1205 -2.9 -14.5 threonine dehydratase compare
Atu1455 -2.8 -7.3 hypothetical protein compare
Atu3905 -2.8 -18.2 nitrate ABC transporter substrate-binding protein conserved
Atu0647 -2.8 -9.8 phosphoribosylamine--glycine ligase compare
Atu0400 -2.8 -6.6 orotate phosphoribosyltransferase compare
Atu1456 -2.8 -13.3 sulfite reductase (NADPH) hemoprotein beta-component compare
Atu0432 -2.8 -11.7 O-succinylhomoserine sulfhydrylase compare
Atu2747 -2.8 -15.3 hypothetical protein compare
Atu0399 -2.7 -6.5 dihydroorotase compare
Atu3885 -2.7 -11.4 inositol monophosphatase compare
Atu2718 -2.7 -10.4 homoserine O-succinyltransferase compare
Atu1454 -2.7 -9.5 siroheme synthase compare
Atu3907 -2.7 -14.6 two component response regulator conserved
Atu3903 -2.6 -14.1 nitrate ABC transporter ATPase conserved
Atu0486 -2.6 -8.6 dihydroorotate dehydrogenase compare
Atu3755 -2.6 -8.0 phosphoribosylaminoimidazole carboxylase ATPase subunit compare
Atu0030 -2.6 -2.5 phosphocarrier protein HPr compare
Atu0322 -2.6 -7.2 enoyl CoA hydratase compare
Atu1307 -2.5 -9.2 dihydroorotase compare
Atu1140 -2.5 -7.9 phosphoribosyalaminoimidazole-succinocarboxamide synthase compare
Atu1308 -2.5 -6.0 aspartate carbamoyl transferase catalytic subunit compare
Atu0298 -2.4 -7.1 orotidine 5 compare
Atu3296 -2.4 -11.1 two component response regulator for C4-dicarboxylate transport compare
Atu1686 -2.3 -14.5 peptidyl-prolyl cis-trans isomerse D compare
Atu1850 -2.3 -3.9 phosphoribosylformylglycinamidine synthetase II compare
Atu2183 -2.3 -8.2 lipopolysaccharide core biosynthesis mannosyltransferase compare
Atu4614 -2.2 -9.7 glycosyltransferase compare
Atu2115 -2.2 -9.7 pyrophosphate--fructose-6-phosphate 1-phosphotransferase compare
Atu2015 -2.2 -10.9 aminotransferase compare
Atu1075 -2.2 -7.4 amidophosphoribosyltransferase compare
Atu4618 -2.2 -13.9 dTDP-rhamnose-3,5-epimerase compare
Atu1845 -2.1 -6.7 phosphoribosylformylglycinamidine synthase I compare
Atu3353 -2.1 -11.7 mannose-1-phosphate guanylyltransferase compare
Atu0029 -2.1 -5.8 S-adenosylhomocysteine hydrolase compare
Atu1141 -2.1 -6.3 Phosphoribosylglycinamide synthetase compare
Atu3297 -2.1 -11.5 two component sensor kinase for C4-dicarboxylate transport compare
Atu3298 -2.0 -12.1 C4-dicarboxylate transporter DctA compare
Atu3311 -2.0 -14.5 phosphomannose isomerase compare
Atu1457 -2.0 -2.9 hypothetical protein compare
Atu4617 -1.9 -9.4 dTDP-D-glucose-4,6-dehydratase compare
Atu2640 -1.9 -6.3 hypothetical protein compare
Atu4615 -1.9 -9.5 glucose-1-phosphate thymidylyltransferase compare
Atu4166 -1.9 -4.3 UDP-glucose 4-epimerase compare
Atu4613 -1.9 -12.9 glycosyltransferase compare
Atu0723 -1.9 -3.0 FAD dependent oxidoreductase compare
Atu1444 -1.8 -5.8 nitrogen regulation protein compare
Atu1359 -1.8 -1.7 dnaK deletion suppressor protein compare
Atu4217 -1.8 -3.4 TetR family transcriptional regulator compare
Atu3014 -1.8 -2.6 hypothetical protein compare
Atu1685 -1.7 -1.6 hypothetical protein compare
Atu4616 -1.7 -1.6 dTDP-4-dehydrorhamnose reductase compare
Atu0876 -1.7 -3.2 superoxide dismutase compare
Atu5451 -1.6 -0.9 hypothetical protein compare
Atu3783 -1.6 -9.8 glutamate synthase subunit beta compare
Atu3784 -1.6 -13.9 glutamate synthase large subunit compare
Atu0671 -1.6 -5.8 hypothetical protein compare
Atu8054 -1.6 -0.6 hypothetical protein compare
Atu1589 -1.5 -5.1 aminotransferase, class I compare
Atu0769 -1.5 -2.3 protoheme IX farnesyltransferase compare
Atu2155 -1.5 -11.3 methionine synthase compare
Atu4890 -1.4 -2.3 IS426 transposase compare
Atu2787 -1.3 -1.5 hypothetical protein compare
Atu0031 -1.3 -1.8 PTS system, IIA component compare
Atu3005 -1.3 -1.2 hypothetical protein compare
Atu4882 -1.2 -1.9 hypothetical protein compare
Atu1217 -1.2 -5.0 cysteine synthase compare
Atu2379 -1.2 -6.7 phosphomannomutase compare
Atu2548 -1.2 -8.4 phosphoribosylaminoimidazole-succinocarboxamide synthase compare
Atu4896 -1.2 -1.8 acetyltransferase compare
Atu2207 -1.1 -3.4 two component sensor kinase compare
Atu4773 -1.1 -2.3 two component response regulator compare
Atu2376 -1.1 -0.9 hypothetical protein compare
Atu3482 -1.1 -6.3 pantoate--beta-alanine ligase compare
Atu1028 -1.1 -2.2 hypothetical protein compare
Atu3730 -1.1 -1.3 hypothetical protein compare
Atu1774 -1.1 -5.5 ABC transporter, substrate binding protein (peptide) compare
Atu2733 -1.1 -3.7 hypothetical protein compare
Atu3483 -1.1 -5.2 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
Atu0422 -1.1 -1.3 ABC transporter, membrane spanning protein compare
Atu0291 -1.0 -6.2 hypothetical protein compare
Atu3121 -1.0 -1.6 cold shock protein compare
Atu1439 -1.0 -2.3 hypothetical protein compare
Atu4096 -1.0 -5.0 nicotinate-nucleotide pyrophosphorylase compare
Atu3009 -1.0 -1.3 exopolysaccharide production protein compare
Atu0421 -1.0 -1.4 ABC transporter, membrane spanning protein compare
Atu4873 -1.0 -4.5 TetR family transcriptional regulator compare
Atu4897 -1.0 -1.3 hypothetical protein compare
Atu1462 -1.0 -6.9 glycine cleavage system protein P2 compare
Atu4502 -0.9 -5.5 cobalamin synthesis protein compare
Atu3731 -0.9 -5.4 5-formyltetrahydrofolate cyclo-ligase compare
Atu4317 -0.8 -2.5 TetR family transcriptional regulator compare
Atu5452 -0.8 -2.3 ABC transporter nucleotide binding/ATPase compare
Atu6123 -0.8 -2.0 conserved hypothetical protein compare
Atu2209 -0.8 -3.4 pyrroline-5-carboxylate reductase compare
Atu0354 -0.8 -1.6 ferric uptake regulator compare
Atu0361 -0.8 -1.6 transcriptional regulator compare
Atu0142 -0.8 -2.4 cytochrome o ubiquinol oxidase subunit II compare
Atu3496 -0.8 -2.8 hypothetical protein compare
Atu4098 -0.8 -4.9 quinolinate synthetase compare
Atu8115 -0.8 -3.3 Hypothetical Protein compare
Atu3289 -0.8 -2.9 thiamine-phosphate pyrophosphorylase compare
Atu3008 -0.8 -0.8 hypothetical protein compare
Atu3036 -0.8 -3.3 dipeptide ABC transporter permease compare
Atu2800 -0.7 -2.8 precorrin-3B C17-methyltransferase compare
Atu2113 -0.7 -1.8 N-acetylmuramoyl-L-alanine amidase compare
Atu1163 -0.7 -1.8 exopolysaccharide II synthesis transcriptional activator ExpG compare
Atu3001 -0.7 -1.4 hypothetical protein compare
Atu4887 -0.7 -3.0 hypothetical protein compare
Atu4711 -0.7 -2.9 two component sensor kinase compare
Atu2827 -0.7 -3.2 hypothetical protein compare
Atu4879 -0.7 -4.0 hypothetical protein compare
Atu6189 -0.7 -0.5 protein secretion chaperone compare
Atu2163 -0.7 -1.1 hypothetical protein compare
Atu1810 -0.7 -1.0 hypothetical protein compare
Atu4097 -0.7 -4.7 L-aspartate oxidase compare
Atu0225 -0.7 -0.8 hypothetical protein compare
Atu0501 -0.7 -5.6 acyl-CoA dehydrogenase compare
Atu0153 -0.7 -2.0 transcriptional regulator, Fur family compare
Atu0533 -0.7 -0.8 putative inhibitor of septum formation compare
Atu1026 -0.7 -0.9 hypothetical protein compare
Atu2125 -0.7 -1.3 ABC transporter, nucleotide binding/ATPase protein compare
Atu6027 -0.7 -2.2 ABC transporter, substrate binding protein (nopaline) compare
Atu2131 -0.7 -4.1 hypothetical protein compare
Atu2432 -0.7 -1.6 hypothetical protein compare
Atu5487 -0.6 -1.8 hypothetical protein compare
Atu3015 -0.6 -3.1 hypothetical protein compare
Atu0036 -0.6 -2.1 hypothetical protein compare
Atu3290 -0.6 -3.4 phosphomethylpyrimidine kinase compare
Atu2757 -0.6 -3.0 nitrogen regulatory protein PII compare
Atu2683 -0.6 -1.3 hypothetical protein compare
Atu0188 -0.6 -1.9 ABC transporter, membrane spanning protein (peptide) compare
Atu3011 -0.6 -1.1 ArsR family transcriptional regulator compare
Atu1629 -0.6 -0.9 transcriptional regulator, ArsR family compare
Atu2123 -0.6 -2.2 methylenetetrahydrofolate reductase compare
Atu0190 -0.6 -3.5 ABC transporter, nucleotide binding/ATPase protein (peptide) compare
Atu8162 -0.6 -1.0 hypothetical protein compare
Atu1748 -0.6 -3.6 NIFU-like protein compare
Atu4884 -0.6 -2.0 hypothetical protein compare
Atu4892 -0.6 -4.6 hypothetical protein compare
Atu3019 -0.6 -4.0 hypothetical protein compare
Atu5163 -0.6 -0.9 type IV secretion protein AvhB2 compare
Atu2805 -0.6 -2.9 cobalamin synthesis protein compare
Atu0702 -0.6 -2.0 calcium-binding protein, regucalcin compare
Atu0767 -0.6 -2.6 cytochrome c oxidase subunit II compare
Atu2797 -0.6 -3.2 cobalamin biosynthesis protein compare
Atu0434 -0.6 -0.9 2'-deoxycytidine 5'-triphosphate deaminase compare
Atu4407 -0.6 -1.8 periplasmic nitrate reductase, NapD protein compare
Atu4889 -0.6 -2.9 hypothetical protein compare
Atu5499 -0.6 -2.1 oxidoreductase compare
Atu0312 -0.6 -4.2 cysteine synthase compare
Atu0405 -0.6 -4.6 long-chain-fatty-acid-CoA-ligase compare
Atu3763 -0.6 -1.2 hypothetical protein compare
Atu4877 -0.6 -4.2 short-chain dehydrogenase compare
Atu1372 -0.6 -3.0 hypothetical protein compare
Atu5457 -0.6 -2.2 dihydrodipicolinate synthase compare
Atu4019 -0.6 -3.8 two component response regulator compare
Atu0535 -0.6 -2.1 hypothetical protein compare
Atu1737 -0.6 -1.6 hypothetical protein compare
Atu2678 -0.5 -2.3 2'-5' RNA ligase compare
Atu5007 -0.5 -2.0 santhopine-responsive transcriptional repressor compare


Specific Phenotypes

For 12 genes in this experiment

For nitrogen source Sodium nitrate in Agrobacterium fabrum C58

For nitrogen source Sodium nitrate across organisms