Experiment set3IT006 for Pseudomonas simiae WCS417

Compare to:

L-Valine carbon source

200 most important genes:

  gene name fitness t score description  
PS417_01565 -9.0 -3.4 imidazole glycerol phosphate synthase compare
PS417_17565 -7.4 -2.4 branched-chain amino acid aminotransferase compare
PS417_18600 -7.3 -2.4 isopropylmalate isomerase compare
PS417_26740 -7.1 -6.6 homoserine acetyltransferase compare
PS417_01855 -7.0 -2.3 phosphoribosyl-AMP cyclohydrolase compare
PS417_01570 -7.0 -2.3 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase compare
PS417_28220 -7.0 -2.3 LysR family transcriptional regulator compare
PS417_18560 -6.8 -8.8 N-(5'-phosphoribosyl)anthranilate isomerase compare
PS417_27835 -6.7 -6.0 endoribonuclease compare
PS417_02510 -6.4 -4.7 ATP phosphoribosyltransferase regulatory subunit compare
PS417_01575 -6.2 -3.4 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PS417_18585 -6.1 -4.8 3-isopropylmalate dehydrogenase compare
PS417_25705 -6.0 -2.5 lipoate--protein ligase compare
PS417_23800 -6.0 -7.1 ketol-acid reductoisomerase compare
PS417_18595 -6.0 -2.9 3-isopropylmalate dehydratase compare
PS417_00185 -6.0 -2.9 tryptophan synthase subunit beta compare
PS417_04420 -5.9 -10.1 histidinol dehydrogenase compare
PS417_04415 -5.7 -7.4 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PS417_01850 -5.6 -5.9 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PS417_07640 -5.6 -2.8 glyceraldehyde-3-phosphate dehydrogenase compare
PS417_05595 -5.5 -11.2 ornithine carbamoyltransferase compare
PS417_18530 -5.5 -5.4 O-succinylhomoserine sulfhydrylase compare
PS417_25725 -5.3 -10.9 anthranilate synthase component I compare
PS417_12290 -5.3 -8.3 sulfite reductase compare
PS417_21065 -5.3 -1.4 3-methylitaconate isomerase compare
PS417_24745 -5.1 -2.9 gamma-glutamyl phosphate reductase compare
PS417_27040 -5.1 -2.3 3-phosphoglycerate dehydrogenase compare
PS417_26745 -5.0 -6.1 methionine biosynthesis protein MetW compare
PS417_23810 -5.0 -10.4 acetolactate synthase 3 catalytic subunit compare
PS417_27795 -4.9 -0.9 orotate phosphoribosyltransferase compare
PS417_23725 -4.9 -2.0 methylmalonate-semialdehyde dehydrogenase compare
PS417_17795 -4.9 -1.6 ABC transporter permease compare
PS417_23805 -4.8 -4.6 acetolactate synthase 3 regulatory subunit compare
PS417_21750 -4.7 -22.0 acetyl-CoA synthetase compare
PS417_26995 -4.6 -10.2 phosphoserine phosphatase compare
PS417_16465 -4.6 -6.4 sirohydrochlorin ferrochelatase compare
PS417_23995 -4.6 -0.9 preprotein translocase subunit SecG compare
PS417_00180 -4.5 -2.6 tryptophan synthase subunit alpha compare
PS417_20125 -4.5 -3.2 phosphoribosylglycinamide formyltransferase compare
PS417_23545 -4.5 -2.9 gamma-glutamyl kinase compare
PS417_17560 -4.5 -3.0 Dihydrolipoyl dehydrogenase (EC 1.8.1.4) (from data) compare
PS417_21275 -4.4 -11.7 GntR family transcriptional regulator conserved
PS417_22520 -4.2 -2.2 histidine kinase compare
PS417_25720 -4.2 -5.5 anthranilate synthase component II compare
PS417_24155 -4.2 -2.5 ATP-binding protein compare
PS417_12855 -4.1 -4.1 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_13835 -4.1 -7.8 3-hydroxyisobutyryl-CoA hydrolase (EC 3.1.2.4) (from data) conserved
PS417_27195 -4.0 -1.1 N-acetylglutamate synthase compare
PS417_21070 -4.0 -2.8 aconitate hydratase compare
PS417_25710 -4.0 -1.1 indole-3-glycerol-phosphate synthase compare
PS417_23730 -4.0 -11.2 LysR family transcriptional regulator conserved
PS417_19335 -4.0 -2.3 isochorismatase compare
PS417_15935 -3.9 -2.2 Rrf2 family transcriptional regulator compare
PS417_16570 -3.9 -9.5 isocitrate lyase compare
PS417_27605 -3.9 -5.7 hypothetical protein compare
PS417_22060 -3.9 -1.0 hypothetical protein compare
PS417_10535 -3.9 -5.4 hypothetical protein compare
PS417_01580 -3.9 -1.0 imidazole glycerol phosphate synthase compare
PS417_20160 -3.9 -3.8 cysteine synthase compare
PS417_00900 -3.8 -2.5 4-aminobutyrate aminotransferase compare
PS417_25715 -3.8 -4.5 anthranilate phosphoribosyltransferase compare
PS417_05570 -3.6 -4.5 DeoR faimly transcriptional regulator compare
PS417_01560 -3.6 -2.5 imidazoleglycerol-phosphate dehydratase compare
PS417_03465 -3.6 -1.5 type III secretion protein compare
PS417_18690 -3.5 -3.0 aromatic amino acid aminotransferase compare
PS417_26890 -3.5 -4.5 dihydroxy-acid dehydratase compare
PS417_08365 -3.4 -0.9 hypothetical protein compare
PS417_06375 -3.3 -0.9 deoxycytidine triphosphate deaminase compare
PS417_05840 -3.3 -3.0 LuxR family transcriptional regulator compare
PS417_12665 -3.2 -6.5 hypothetical protein conserved
PS417_08155 -3.1 -1.7 integration host factor subunit beta compare
PS417_12660 -3.1 -1.2 hypothetical protein compare
PS417_13840 -3.1 -5.9 isobutyryl-CoA dehydrogenase (EC 1.3.8.5) (from data) conserved
PS417_08125 -3.1 -1.0 prephenate dehydratase compare
PS417_04410 -3.1 -1.9 hypothetical protein compare
PS417_01180 -3.0 -7.2 ribosomal protein S6 modification protein compare
PS417_19735 -2.9 -3.8 flagellar biosynthesis protein FliQ compare
PS417_13510 -2.9 -1.0 polyketide cyclase compare
PS417_26900 -2.8 -1.9 L-cystine transporter tcyP compare
PS417_14980 -2.8 -0.9 universal stress protein UspA compare
PS417_17610 -2.8 -1.2 AsnC family transcriptional regulator compare
PS417_00355 -2.8 -3.0 metal ABC transporter permease compare
PS417_04650 -2.8 -1.2 D-alanine--D-alanine ligase compare
PS417_23770 -2.7 -2.5 exodeoxyribonuclease V subunit alpha compare
PS417_17545 -2.7 -2.2 2-oxoisovalerate dehydrogenase compare
PS417_27010 -2.7 -9.6 threonine dehydratase compare
PS417_07700 -2.7 -1.9 chromosome partitioning protein ParA compare
PS417_20610 -2.7 -1.0 hypothetical protein compare
PS417_23110 -2.7 -4.4 2-isopropylmalate synthase compare
PS417_27610 -2.7 -5.5 hypothetical protein compare
PS417_04365 -2.7 -1.0 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase compare
PS417_22375 -2.6 -0.8 cold-shock protein compare
PS417_26040 -2.6 -2.7 malate synthase compare
PS417_08230 -2.5 -1.5 lipopolysaccharide biosynthesis protein RfbH compare
PS417_26730 -2.5 -0.9 pyrroline-5-carboxylate reductase compare
PS417_27005 -2.5 -0.9 membrane protein compare
PS417_16555 -2.5 -2.1 cupin compare
PS417_02415 -2.5 -4.7 phosphoserine phosphatase compare
PS417_17505 -2.5 -2.8 LuxR family transcriptional regulator compare
PS417_18590 -2.4 -2.5 SAM-dependent methyltransferase compare
PS417_04220 -2.4 -1.1 4-carboxymuconolactone decarboxylase compare
PS417_06710 -2.4 -1.4 beta-ketoadipyl CoA thiolase compare
PS417_24615 -2.4 -1.1 hypothetical protein compare
PS417_21700 -2.4 -4.8 arginine N-succinyltransferase compare
PS417_00650 -2.4 -0.8 LysR family transcriptional regulator compare
PS417_05165 -2.4 -3.5 cytosol aminopeptidase compare
PS417_23025 -2.4 -5.6 murein transglycosylase compare
PS417_27210 -2.3 -4.8 AsnC family transcriptional regulator conserved
PS417_16195 -2.3 -0.8 AraC family transcriptional regulator compare
PS417_25790 -2.3 -4.8 aminoglycoside phosphotransferase compare
PS417_13050 -2.3 -1.7 N-acetylglucosamine-6-sulfatase compare
PS417_15975 -2.3 -1.5 glutamate carboxypeptidase compare
PS417_20580 -2.3 -12.1 isocitrate dehydrogenase compare
PS417_12035 -2.2 -2.3 dihydroxyacetone kinase compare
PS417_19730 -2.2 -1.8 flagellar biosynthesis protein FliR compare
PS417_21125 -2.2 -4.8 phosphoadenosine phosphosulfate reductase compare
PS417_23690 -2.2 -4.7 Anthranilate 1,2-dioxygenase (deaminating, decarboxylating) (EC 1.14.12.1) (from data) compare
PS417_22445 -2.2 -3.4 ATP-dependent DNA helicase RuvB compare
PS417_19805 -2.2 -2.5 flagellar M-ring protein FliF compare
PS417_17000 -2.2 -2.2 MerR family transcriptional regulator compare
PS417_26005 -2.2 -8.0 biotin synthase compare
PS417_09460 -2.1 -2.5 alkanesulfonate monooxygenase compare
PS417_27300 -2.1 -0.7 cell division protein ZapA compare
PS417_23775 -2.1 -1.7 exodeoxyribonuclease V subunit beta compare
PS417_23315 -2.1 -0.9 transcriptional regulator compare
PS417_25650 -2.1 -3.4 anhydro-N-acetylmuramic acid kinase compare
PS417_05905 -2.1 -1.7 hypothetical protein compare
PS417_24265 -2.1 -4.2 ABC transporter ATP-binding protein compare
PS417_04305 -2.1 -1.1 aspartate ammonia-lyase compare
PS417_26645 -2.0 -2.4 chemotaxis protein compare
PS417_24370 -2.0 -0.6 (2Fe-2S)-binding protein compare
PS417_22840 -2.0 -1.5 tRNA-Met compare
PS417_28145 -1.9 -2.4 AraC family transcriptional regulator compare
PS417_19965 -1.9 -9.7 histidine kinase compare
PS417_21705 -1.9 -4.8 arginine N-succinyltransferase compare
PS417_01920 -1.9 -1.3 ATP-dependent protease subunit HslV compare
PS417_19790 -1.9 -1.6 ATP synthase compare
PS417_01710 -1.9 -3.7 histidine utilization repressor compare
PS417_21570 -1.9 -2.4 flagellar basal body rod protein FlgB compare
PS417_25985 -1.9 -1.5 dethiobiotin synthetase compare
PS417_07620 -1.9 -1.6 beta-hexosaminidase compare
PS417_05535 -1.9 -1.4 Fis family transcriptional regulator compare
PS417_09930 -1.8 -1.2 hypothetical protein compare
PS417_08540 -1.8 -2.0 RNA helicase compare
PS417_19755 -1.8 -1.0 flagellar motor switch protein FliM compare
PS417_26530 -1.8 -0.9 hypothetical protein compare
PS417_27045 -1.8 -2.2 ATPase compare
PS417_22870 -1.8 -2.0 lipoprotein compare
PS417_01605 -1.8 -1.2 phosphoglycerate mutase compare
PS417_23950 -1.7 -2.0 polynucleotide phosphorylase/polyadenylase compare
PS417_02720 -1.7 -0.6 TetR family transcriptional regulator compare
PS417_22450 -1.7 -1.1 ATP-dependent DNA helicase RuvA compare
PS417_15915 -1.7 -1.0 hypothetical protein compare
PS417_05850 -1.7 -3.2 LysR family transcriptional regulator compare
PS417_24650 -1.7 -1.4 membrane protein compare
PS417_15665 -1.7 -1.3 hypothetical protein compare
PS417_02160 -1.7 -0.8 hypothetical protein compare
PS417_04875 -1.7 -1.2 molybdenum cofactor biosynthesis protein MoaE compare
PS417_19740 -1.7 -2.5 flagellar biosynthesis protein flip compare
PS417_27690 -1.7 -2.3 XRE family transcriptional regulator compare
PS417_26660 -1.7 -3.7 protein PilI compare
PS417_21655 -1.7 -0.9 aspartate kinase compare
PS417_05865 -1.6 -1.8 hypothetical protein compare
PS417_07455 -1.6 -1.3 glutamine amidotransferase compare
PS417_24765 -1.6 -2.5 membrane protein compare
PS417_07070 -1.6 -3.6 membrane protein compare
PS417_07845 -1.6 -1.7 transcriptional regulator compare
PS417_15110 -1.6 -5.0 protein BatD compare
PS417_06685 -1.6 -0.8 beta-ketoadipyl CoA thiolase compare
PS417_11410 -1.6 -1.8 phospholipase compare
PS417_20785 -1.6 -3.9 transcriptional regulator compare
PS417_09880 -1.6 -2.3 hypothetical protein compare
PS417_16490 -1.5 -1.3 cell division protein FtsK compare
PS417_16715 -1.5 -1.1 DoxX family protein compare
PS417_27435 -1.5 -4.0 polyphosphate kinase compare
PS417_19620 -1.5 -1.5 hypothetical protein compare
PS417_15090 -1.5 -2.5 hypothetical protein compare
PS417_17550 -1.5 -1.0 branched-chain alpha-ketoacid dehydrogenase, E1 component beta subunit (EC 1.2.4.4) (from data) compare
PS417_19725 -1.5 -2.5 flagellar biosynthesis protein FlhB compare
PS417_19275 -1.5 -0.7 hypothetical protein compare
PS417_12220 -1.5 -2.3 hydroxyacylglutathione hydrolase compare
PS417_00570 -1.5 -3.2 NADP transhydrogenase subunit alpha compare
PS417_01185 -1.5 -3.2 ribosomal protein S6 modification protein compare
PS417_00175 -1.5 -0.8 CigR compare
PS417_03350 -1.5 -2.1 cytochrome C peroxidase compare
PS417_08940 -1.5 -2.3 thioesterase compare
PS417_22570 -1.5 -0.7 H-NS histone compare
PS417_12730 -1.5 -1.0 glycosyltransferase compare
PS417_01750 -1.5 -2.2 histidine ammonia-lyase compare
PS417_04595 -1.4 -1.8 cell division protein MraZ compare
PS417_05815 -1.4 -3.2 recombinase RecA compare
PS417_07875 -1.4 -0.7 hypothetical protein compare
PS417_03490 -1.4 -2.4 type III secretion system protein SsaR compare
PS417_20635 -1.4 -0.6 ABC transporter ATP-binding protein compare
PS417_15095 -1.4 -1.9 hypothetical protein compare
PS417_27035 -1.4 -3.3 FAD-linked oxidase compare
PS417_00510 -1.4 -0.6 membrane protein compare
PS417_18055 -1.4 -0.9 general secretion pathway protein GspK compare
PS417_03740 -1.4 -2.1 peptidylprolyl isomerase compare
PS417_06145 -1.4 -0.7 hypothetical protein compare


Specific Phenotypes

For 19 genes in this experiment

For carbon source L-Valine in Pseudomonas simiae WCS417

For carbon source L-Valine across organisms