Experiment set3IT006 for Agrobacterium fabrum C58

Compare to:

Sodium nitrate nitrogen source

200 most important genes:

  gene name fitness t score description  
Atu3707 -5.7 -5.5 phosphoserine aminotransferase compare
Atu0346 -5.1 -6.0 uridylyltransferase/uridylyl-removing enzyme UTase compare
Atu2040 -4.7 -8.5 phosphoserine phosphatase compare
Atu3706 -4.7 -12.9 D-3-phosphoglycerate dehydrogenase compare
Atu0043 -4.6 -4.5 imidazoleglycerol-phosphate dehydratase compare
Atu0041 -4.6 -4.4 glutamine amidotransferase compare
Atu0537 -4.4 -9.8 histidinol dehydrogenase compare
Atu1750 -4.4 -6.1 phosphoribosyl c-AMP cyclohydrolase compare
Atu0099 -4.4 -16.8 prephenate dehydratase compare
Atu0678 -4.3 -7.9 histidyl-tRNA synthetase compare
Atu1687 -4.2 -11.7 anthranilate phosphoribosyltransferase compare
Atu0035 -4.1 -11.7 phosphoenolpyruvate carboxykinase compare
Atu0679 -4.1 -6.2 ATP phosphoribosyltransferase compare
Atu1030 -4.1 -2.6 GTP pyrophosphohydrolase/synthetase, RelA/SpoT family compare
Atu3740 -4.0 -13.1 fructose bisphosphate aldolase compare
Atu1844 -3.8 -6.1 Phosphoribosylformylglycinamidine synthetase compare
Atu2289 -3.8 -20.3 anthranilate synthase component I and II compare
Atu2791 -3.8 -8.7 3-isopropylmalate dehydrogenase compare
Atu0723 -3.8 -3.6 FAD dependent oxidoreductase compare
Atu1588 -3.7 -11.8 homoserine dehydrogenase compare
Atu4505 -3.7 -11.5 LacI family transcriptional regulator compare
Atu2709 -3.7 -18.9 3-isopropylmalate dehydratase, large subunit compare
Atu3739 -3.7 -2.8 phosphoglycerate kinase compare
Atu1445 -3.6 -9.5 two component sensor kinase compare
Atu2036 -3.5 -17.7 acetolactate synthase III, large subunit compare
Atu2650 -3.4 -14.9 glycerol-3-phosphate dehydrogenase compare
Atu1620 -3.3 -16.1 triosephosphate isomerase compare
Atu3885 -3.3 -12.2 inositol monophosphatase compare
Atu2264 -3.3 -15.4 2-isopropylmalate synthase compare
Atu2790 -3.3 -4.6 3-isopropylmalate dehydratase, small subunit compare
Atu1456 -3.2 -12.8 sulfite reductase (NADPH) hemoprotein beta-component compare
Atu2718 -3.2 -11.3 homoserine O-succinyltransferase compare
Atu2747 -3.2 -15.1 hypothetical protein compare
Atu3469 -3.2 -4.2 phosphoglyceromutase compare
Atu1688 -3.1 -7.9 indole-3-glycerol-phosphate synthase compare
Atu0040 -3.0 -1.7 phosphoribosylformino-5-aminoimidazole carboxamide ribotide isomerase compare
Atu0647 -3.0 -9.4 phosphoribosylamine--glycine ligase compare
Atu3905 -3.0 -19.6 nitrate ABC transporter substrate-binding protein conserved
Atu0017 -3.0 -4.4 N-(5-phosphoribosyl) anthranilate isomerase compare
Atu1845 -3.0 -7.5 phosphoribosylformylglycinamidine synthase I compare
Atu0038 -3.0 -8.2 phosphoribosyl-ATP pyrophosphohydrolase compare
Atu0332 -3.0 -12.9 RNA polymerase sigma-54 factor compare
Atu3902 -2.9 -21.4 nitrite reductase large subunit conserved
Atu1850 -2.9 -5.8 phosphoribosylformylglycinamidine synthetase II compare
Atu1446 -2.9 -3.3 two component response regulator compare
Atu3754 -2.9 -8.5 phosphoribosylaminoimidazole carboxylase catalytic subunit compare
Atu3907 -2.9 -15.2 two component response regulator conserved
Atu0432 -2.8 -13.2 O-succinylhomoserine sulfhydrylase compare
Atu3904 -2.8 -11.9 nitrate ABC transporter permease compare
Atu0039 -2.8 -3.6 imidazoleglycerol-phosphate synthase cyclase compare
Atu3901 -2.8 -9.4 nitrite reductase small subunit conserved
Atu0399 -2.7 -8.5 dihydroorotase compare
Atu1205 -2.7 -13.2 threonine dehydratase compare
Atu3903 -2.6 -14.9 nitrate ABC transporter ATPase conserved
Atu1307 -2.6 -6.0 dihydroorotase compare
Atu1454 -2.6 -13.0 siroheme synthase compare
Atu0400 -2.6 -7.8 orotate phosphoribosyltransferase compare
Atu1140 -2.6 -6.5 phosphoribosyalaminoimidazole-succinocarboxamide synthase compare
Atu1455 -2.6 -6.3 hypothetical protein compare
Atu0486 -2.5 -6.4 dihydroorotate dehydrogenase compare
Atu0322 -2.5 -8.9 enoyl CoA hydratase compare
Atu1308 -2.5 -7.1 aspartate carbamoyl transferase catalytic subunit compare
Atu1141 -2.5 -8.7 Phosphoribosylglycinamide synthetase compare
Atu0422 -2.4 -3.6 ABC transporter, membrane spanning protein compare
Atu2015 -2.3 -12.1 aminotransferase compare
Atu0769 -2.3 -2.7 protoheme IX farnesyltransferase compare
Atu1686 -2.3 -14.1 peptidyl-prolyl cis-trans isomerse D compare
Atu0298 -2.2 -9.8 orotidine 5 compare
Atu0030 -2.2 -2.5 phosphocarrier protein HPr compare
Atu2115 -2.2 -11.7 pyrophosphate--fructose-6-phosphate 1-phosphotransferase compare
Atu2640 -2.1 -6.7 hypothetical protein compare
Atu3298 -2.1 -13.0 C4-dicarboxylate transporter DctA compare
Atu3296 -2.1 -11.9 two component response regulator for C4-dicarboxylate transport compare
Atu1075 -2.0 -7.9 amidophosphoribosyltransferase compare
Atu3297 -1.9 -11.3 two component sensor kinase for C4-dicarboxylate transport compare
Atu1589 -1.9 -9.3 aminotransferase, class I compare
Atu1457 -1.9 -2.5 hypothetical protein compare
Atu3755 -1.9 -5.6 phosphoribosylaminoimidazole carboxylase ATPase subunit compare
Atu4616 -1.9 -2.8 dTDP-4-dehydrorhamnose reductase compare
Atu0029 -1.8 -6.1 S-adenosylhomocysteine hydrolase compare
Atu8054 -1.7 -0.7 hypothetical protein compare
Atu6114 -1.7 -1.9 hypothetical protein compare
Atu1444 -1.6 -3.6 nitrogen regulation protein compare
Atu1359 -1.6 -1.7 dnaK deletion suppressor protein compare
Atu3783 -1.6 -11.2 glutamate synthase subunit beta compare
Atu4614 -1.6 -7.1 glycosyltransferase compare
Atu3784 -1.5 -12.8 glutamate synthase large subunit compare
Atu4618 -1.5 -9.4 dTDP-rhamnose-3,5-epimerase compare
Atu2183 -1.5 -9.7 lipopolysaccharide core biosynthesis mannosyltransferase compare
Atu2155 -1.4 -10.9 methionine synthase compare
Atu3730 -1.3 -2.2 hypothetical protein compare
Atu4217 -1.3 -3.0 TetR family transcriptional regulator compare
Atu0031 -1.3 -1.8 PTS system, IIA component compare
Atu0671 -1.3 -6.5 hypothetical protein conserved
Atu3731 -1.3 -5.5 5-formyltetrahydrofolate cyclo-ligase compare
Atu2548 -1.2 -9.1 phosphoribosylaminoimidazole-succinocarboxamide synthase compare
Atu0876 -1.2 -1.4 superoxide dismutase compare
Atu0026 -1.2 -1.4 hypothetical protein compare
Atu4615 -1.2 -8.5 glucose-1-phosphate thymidylyltransferase compare
Atu4617 -1.2 -8.9 dTDP-D-glucose-4,6-dehydratase compare
Atu4166 -1.2 -3.5 UDP-glucose 4-epimerase compare
Atu4613 -1.2 -8.3 glycosyltransferase compare
Atu3012 -1.2 -2.4 hypothetical protein compare
Atu3353 -1.1 -8.3 mannose-1-phosphate guanylyltransferase compare
Atu5430 -1.1 -1.0 hypothetical protein compare
Atu3311 -1.1 -9.6 phosphomannose isomerase compare
Atu1217 -1.1 -4.5 cysteine synthase compare
Atu8082 -1.1 -2.8 hypothetical protein compare
Atu4773 -1.1 -2.2 two component response regulator compare
Atu4896 -1.0 -2.1 acetyltransferase compare
Atu3482 -1.0 -5.7 pantoate--beta-alanine ligase compare
Atu3496 -1.0 -2.1 hypothetical protein compare
Atu5519 -1.0 -2.1 hypothetical protein compare
Atu2733 -0.9 -3.1 hypothetical protein compare
Atu3483 -0.9 -2.8 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
Atu6036 -0.9 -0.5 entry-exclusion protein compare
Atu4346 -0.9 -4.3 hypothetical protein compare
Atu2209 -0.9 -2.9 pyrroline-5-carboxylate reductase compare
Atu3009 -0.9 -1.0 exopolysaccharide production protein compare
Atu1463 -0.9 -4.1 glycine cleavage system component H compare
Atu2376 -0.9 -0.6 hypothetical protein compare
Atu5104 -0.9 -2.6 hypothetical protein compare
Atu4711 -0.9 -3.8 two component sensor kinase compare
Atu1685 -0.9 -1.1 hypothetical protein compare
Atu4502 -0.9 -5.7 cobalamin synthesis protein compare
Atu0086 -0.8 -0.8 ribosome-binding factor A compare
Atu0190 -0.8 -4.1 ABC transporter, nucleotide binding/ATPase protein (peptide) compare
Atu0025 -0.8 -1.4 hypothetical protein compare
Atu2123 -0.8 -3.5 methylenetetrahydrofolate reductase compare
Atu2694 -0.8 -2.5 hypothetical protein compare
Atu3505 -0.8 -5.2 3-hydroxyisobutyryl-CoA hydrolase compare
Atu5088 -0.8 -1.2 hypothetical protein compare
Atu1462 -0.8 -5.4 glycine cleavage system protein P2 compare
Atu2207 -0.8 -2.0 two component sensor kinase compare
Atu2757 -0.8 -3.2 nitrogen regulatory protein PII compare
Atu3468 -0.8 -0.9 hypothetical protein compare
Atu4873 -0.8 -4.9 TetR family transcriptional regulator compare
Atu8115 -0.8 -3.5 Hypothetical Protein compare
Atu4098 -0.8 -5.2 quinolinate synthetase compare
Atu4096 -0.8 -4.7 nicotinate-nucleotide pyrophosphorylase compare
Atu5145 -0.8 -1.8 acetyltransferase compare
Atu1774 -0.8 -4.7 ABC transporter, substrate binding protein (peptide) compare
Atu6165 -0.7 -0.4 hypothetical protein compare
Atu8099 -0.7 -0.8 hypothetical protein compare
Atu6153 -0.7 -1.9 conserved hypothetical protein compare
Atu5142 -0.7 -0.8 hypothetical protein compare
Atu1019 -0.7 -2.4 hypothetical protein compare
Atu1439 -0.7 -1.9 hypothetical protein compare
Atu3290 -0.7 -5.6 phosphomethylpyrimidine kinase compare
Atu4879 -0.7 -3.9 hypothetical protein compare
Atu0153 -0.7 -3.9 transcriptional regulator, Fur family compare
Atu0188 -0.7 -1.6 ABC transporter, membrane spanning protein (peptide) compare
Atu5146 -0.7 -1.0 hypothetical protein compare
Atu4881 -0.7 -3.6 hypothetical protein compare
Atu3008 -0.7 -0.8 hypothetical protein compare
Atu5450 -0.7 -2.6 hypothetical protein compare
Atu8053 -0.7 -1.5 hypothetical protein compare
Atu1464 -0.7 -3.0 glycine cleavage system T protein, aminomethyltransferase compare
Atu2163 -0.7 -1.4 hypothetical protein compare
Atu4097 -0.7 -4.3 L-aspartate oxidase compare
Atu0312 -0.6 -5.0 cysteine synthase compare
Atu3001 -0.6 -1.3 hypothetical protein compare
Atu0405 -0.6 -5.2 long-chain-fatty-acid-CoA-ligase compare
Atu4893 -0.6 -2.6 hypothetical protein compare
Atu4888 -0.6 -2.7 hypothetical protein compare
Atu5136 -0.6 -2.3 transcriptional repressor of the blcABC operon compare
Atu5437 -0.6 -1.7 hypothetical protein compare
Atu1028 -0.6 -1.1 hypothetical protein compare
Atu2379 -0.6 -4.5 phosphomannomutase compare
Atu2456 -0.6 -2.7 lactoylglutathione lyase compare
Atu5443 -0.6 -2.0 TetR family transcriptional regulator compare
Atu0291 -0.6 -3.5 hypothetical protein compare
Atu2238 -0.6 -3.4 ubiquinol-cytochrome c reductase cytochrome b subunit compare
Atu4892 -0.6 -4.5 hypothetical protein compare
Atu4889 -0.6 -2.6 hypothetical protein compare
Atu2131 -0.6 -2.8 hypothetical protein compare
Atu0434 -0.6 -1.3 2'-deoxycytidine 5'-triphosphate deaminase compare
Atu0331 -0.6 -2.3 sigma-54 modulation protein compare
Atu0767 -0.6 -3.5 cytochrome c oxidase subunit II compare
Atu5493 -0.6 -1.3 hypothetical protein compare
Atu2555 -0.6 -3.0 L-lysine 2,3-aminomutase compare
Atu8052 -0.6 -0.5 hypothetical protein compare
Atu0361 -0.6 -1.0 transcriptional regulator compare
Atu0768 -0.6 -4.3 cytochrome-c oxidase chain I compare
Atu3020 -0.6 -2.6 GntR family transcriptional regulator compare
Atu5026 -0.6 -1.5 hypothetical protein compare
Atu3036 -0.6 -2.6 dipeptide ABC transporter permease compare
Atu1570 -0.6 -0.7 hypothetical protein compare
Atu3516 -0.6 -1.9 MutT family NTP pyrophosphatase compare
Atu4869 -0.6 -2.1 hypothetical protein compare
Atu0895 -0.6 -1.6 ABC transporter, substrate binding protein compare
Atu1435 -0.6 -1.5 hypothetical protein compare
Atu6117 -0.6 -2.2 NTP pyrophosphohydrolase, MutT family compare
Atu4075 -0.5 -3.6 glycogen synthase compare
Atu4864 -0.5 -3.0 MarR family transcriptional regulator compare
Atu0690 -0.5 -1.2 hypothetical protein compare
Atu0501 -0.5 -4.4 acyl-CoA dehydrogenase compare
Atu5448 -0.5 -1.8 hypothetical protein compare
Atu0764 -0.5 -3.4 hypothetical protein compare
Atu3288 -0.5 -3.3 hydroxyethylthiazole kinase compare


Specific Phenotypes

For 10 genes in this experiment

For nitrogen source Sodium nitrate in Agrobacterium fabrum C58

For nitrogen source Sodium nitrate across organisms