Experiment set3IT006 for Agrobacterium fabrum C58

Compare to:

Sodium nitrate nitrogen source

200 most detrimental genes:

  gene name fitness t score description  
Atu6138 +2.7 10.4 Repressor of the acc and arc operons compare
Atu6131 +1.7 6.1 TraR Antiactivator compare
Atu6098 +1.5 1.4 transcriptional regulator, HTH family compare
Atu3183 +1.0 1.7 hypothetical protein compare
Atu4530 +1.0 3.7 TetR family transcriptional regulator compare
Atu5513 +0.9 1.1 cold shock protein compare
Atu1818 +0.9 2.3 hypothetical protein compare
Atu6195 +0.8 2.5 conserved hypothetical protein compare
Atu1847 +0.8 1.7 hypothetical protein compare
Atu5173 +0.8 1.2 dehydrogenase compare
Atu1701 +0.7 1.7 protein-L-isoaspartate O-methyltransferase compare
Atu5475 +0.7 1.3 hypothetical protein compare
Atu1566 +0.7 1.3 hypothetical protein compare
Atu3884 +0.7 4.8 hypothetical protein compare
Atu0606 +0.7 2.6 hypothetical protein compare
Atu3775 +0.7 2.6 hypothetical protein compare
Atu1301 +0.6 1.6 hypothetical protein compare
Atu4792 +0.6 2.6 hypothetical protein compare
Atu8055 +0.6 1.7 hypothetical protein compare
Atu1287 +0.6 2.2 hypothetical protein compare
Atu3331 +0.6 2.2 hypothetical protein compare
Atu0105 +0.6 1.5 hypothetical protein compare
Atu6053 +0.6 2.1 conserved hypothetical protein compare
Atu1219 +0.6 0.9 hypothetical protein compare
Atu5497 +0.6 2.2 hypothetical protein compare
Atu6159 +0.6 1.2 hypothetical protein compare
Atu0419 +0.6 1.1 two component sensor kinase compare
Atu0630 +0.6 1.3 hypothetical protein compare
Atu0687 +0.5 1.3 hypothetical protein compare
Atu0545 +0.5 3.7 flagella associated protein compare
Atu1127 +0.5 1.4 molybdopterin converting factor small subunit compare
Atu2325 +0.5 2.3 hypothetical protein compare
Atu2017 +0.5 0.9 hypothetical protein compare
Atu2041 +0.5 1.7 acetyltransferase compare
Atu5107 +0.5 0.9 hypothetical protein compare
Atu5470 +0.5 0.9 hypothetical protein compare
Atu5480 +0.5 1.8 ABC transporter nucleotide binding/ATPase compare
Atu2063 +0.5 1.6 hypothetical protein compare
Atu3733 +0.5 1.9 hypothetical protein compare
Atu0272 +0.5 3.1 transcriptional regulator, MarR family compare
Atu6033 +0.5 1.6 conjugal transfer protein compare
Atu8087 +0.5 0.7 putative peptidoglycan binding protein compare
Atu0824 +0.5 0.9 hypothetical protein compare
Atu5489 +0.5 0.8 hypothetical protein compare
Atu1175 +0.5 1.1 hypothetical protein compare
Atu1517 +0.5 2.2 hypothetical protein compare
Atu6179 +0.5 1.7 virA/G regulated protein compare
Atu0842 +0.4 1.3 hypothetical protein compare
Atu3721 +0.4 1.6 hypothetical protein compare
Atu1830 +0.4 2.1 bacterioferritin comigratory protein compare
Atu3510 +0.4 1.5 amidohydrolase compare
Atu2491 +0.4 1.9 hypothetical protein compare
Atu1911 +0.4 2.8 hypothetical protein compare
Atu4187 +0.4 0.9 tRNA-Met compare
Atu0924 +0.4 1.3 hypothetical protein compare
Atu6040 +0.4 1.3 conjugal transfer protein compare
Atu6104 +0.4 1.8 conserved hypothetical protein compare
Atu6180 +0.4 2.1 virA/G regulated protein compare
Atu0011 +0.4 1.3 transcriptional regulator compare
Atu0515 +0.4 1.8 hypothetical protein compare
Atu1888 +0.4 3.0 two component sensor kinase compare
Atu5075 +0.4 2.0 GntR family transcriptional regulator compare
Atu0507 +0.4 3.1 potassium efflux system protein compare
Atu5043 +0.4 1.3 hypothetical protein compare
Atu0795 +0.4 1.4 hypothetical protein compare
Atu8018 +0.4 0.5 hypothetical protein compare
Atu3678 +0.4 2.2 siderophore biosynthesis protein compare
Atu4423 +0.4 2.5 ABC transporter permease compare
Atu0803 +0.4 3.6 pyruvate,orthophosphate dikinase compare
Atu6149 +0.4 1.1 hypothetical protein compare
Atu2658 +0.4 1.9 GMP synthase - glutamine amidotransferase protein compare
Atu0536 +0.4 2.3 hypothetical protein compare
Atu8024 +0.4 2.0 hypothetical protein compare
Atu0470 +0.4 1.1 hypothetical protein compare
Atu0558 +0.4 2.4 flagellar basal body rod protein compare
Atu4582 +0.4 2.4 ferredoxin compare
Atu0966 +0.4 1.5 hypothetical protein compare
Atu0467 +0.4 1.9 hypothetical protein compare
Atu1969 +0.4 2.1 hypothetical protein compare
Atu1007 +0.4 1.3 hypothetical protein compare
Atu6157 +0.4 1.8 conserved hypothetical protein compare
Atu5413 +0.4 1.7 ABC transporter membrane spanning protein compare
Atu2684 +0.4 0.6 hypothetical protein compare
Atu4409 +0.4 1.5 periplasmic nitrate reductase small subunit compare
Atu2187 +0.4 1.2 transcriptional regulator, ArsR family compare
Atu4840 +0.4 2.0 hypothetical protein compare
Atu2675 +0.4 1.4 hypothetical protein compare
Atu0997 +0.4 1.2 hypothetical protein compare
Atu1952 +0.4 1.0 hypothetical protein compare
Atu1327 +0.4 1.6 NADH-ubiquinone oxidoreductase compare
Atu0859 +0.4 1.7 hypothetical protein compare
Atu1260 +0.4 0.8 hypothetical protein compare
Atu4133 +0.4 2.1 hypothetical protein compare
Atu0562 +0.4 1.5 flagellar motor switch protein FliN compare
Atu1225 +0.4 0.7 hypothetical protein compare
Atu0447 +0.4 1.4 hypothetical protein compare
Atu1222 +0.4 2.7 hypothetical protein compare
Atu8170 +0.4 0.7 hypothetical protein compare
Atu8085 +0.4 2.1 hypothetical protein compare
Atu1968 +0.4 1.0 hypothetical protein compare
Atu0917 +0.4 1.7 hypothetical protein compare
Atu1998 +0.4 1.5 hypothetical protein compare
Atu8057 +0.4 1.2 hypothetical protein compare
Atu1469 +0.3 1.3 hypothetical protein compare
Atu2526 +0.3 2.0 hypothetical protein compare
Atu6194 +0.3 1.9 conserved hypothetical protein compare
Atu4360 +0.3 2.1 sugar ABC transporter permease compare
Atu0564 +0.3 2.4 flagellar biosynthetic protein compare
Atu0049 +0.3 1.6 hypothetical protein compare
Atu0590 +0.3 2.4 transcriptional regulator repressor compare
Atu5149 +0.3 1.2 acetyltransferase compare
Atu5429 +0.3 1.3 transcriptional regulator compare
Atu1640 +0.3 1.5 hypothetical protein compare
Atu8116 +0.3 1.6 hypothetical protein compare
Atu1884 +0.3 1.8 ABC transporter, substrate binding protein (aliphatic sulfonate) compare
Atu3466 +0.3 0.9 ArsR family transcriptional regulator compare
Atu8191 +0.3 1.1 hypothetical protein compare
Atu0556 +0.3 1.3 hypothetical protein compare
Atu8169 +0.3 2.2 hypothetical protein compare
Atu2657 +0.3 1.0 hypothetical protein compare
Atu3365 +0.3 2.1 hypothetical protein compare
Atu3764 +0.3 2.5 sigma 54 dependent transcriptional activator compare
Atu2484 +0.3 0.8 hypothetical protein compare
Atu4053 +0.3 0.9 succinoglycan biosynthesis protein compare
Atu0751 +0.3 1.3 ABC transporter, nucleotide binding/ATPase protein (cobalt) compare
Atu0684 +0.3 1.7 hypothetical protein compare
Atu2067 +0.3 0.5 hypothetical protein compare
Atu0257 +0.3 2.1 hypothetical protein compare
Atu4160 +0.3 1.9 RNA polymerase sigma factor compare
Atu4435 +0.3 2.2 oligopeptide ABC transporter ATPase compare
Atu4424 +0.3 2.2 spermidine/putrescine ABC transporter ATPase compare
Atu3226 +0.3 1.7 GntR family transcriptional regulator compare
Atu8025 +0.3 0.6 hypothetical protein compare
Atu6071 +0.3 1.6 Zn-dependent hydrolases compare
Atu2626 +0.3 1.5 hypothetical protein compare
Atu6137 +0.3 1.9 hypothetical protein compare
Atu4076 +0.3 2.3 glucose-1-phosphate adenylyltransferase compare
Atu2582 +0.3 1.6 UDP-glucose/GDP-mannose dehydrogenase compare
Atu1409 +0.3 1.8 ureidoglycolate hydrolase compare
Atu1973 +0.3 1.9 hypothetical protein compare
Atu1869 +0.3 1.8 hypothetical protein compare
Atu2560 +0.3 2.2 oxidoreductase compare
Atu1481 +0.3 1.3 hypothetical protein compare
Atu1607 +0.3 0.9 DNA repair protein compare
Atu1191 +0.3 1.5 hypothetical protein compare
Atu1043 +0.3 1.3 hypothetical protein compare
Atu1264 +0.3 1.8 hypothetical protein compare
Atu4245 +0.3 1.2 polyamine ABC transporter permease compare
Atu1983 +0.3 2.0 hypothetical protein compare
Atu5144 +0.3 1.0 putative peptidase compare
Atu1634 +0.3 0.9 hypothetical protein compare
Atu4094 +0.3 1.4 hypothetical protein compare
Atu1490 +0.3 1.0 arsenate reductase compare
Atu0546 +0.3 1.6 flagellar biosynthetic protein compare
Atu4006 +0.3 1.5 AsnC family transcriptional regulator compare
Atu4079 +0.3 1.4 hypothetical protein compare
Atu1874 +0.3 1.2 RecA protein compare
Atu3150 +0.3 1.6 sugar ABC transporter permease compare
Atu0528 +0.3 1.1 large conductance mechanosensitive channel protein compare
Atu3583 +0.3 1.3 hypothetical protein compare
Atu5207 +0.3 1.2 hypothetical protein compare
Atu3605 +0.3 1.7 hypothetical protein compare
Atu2299 +0.3 1.8 hypothetical protein compare
Atu1305 +0.3 1.9 DNA processing chain A compare
Atu1302 +0.3 0.8 hypothetical protein compare
Atu1023 +0.3 0.9 hypothetical protein compare
Atu2121 +0.3 1.8 glycosyl hydrolase/lysozyme compare
Atu2293 +0.3 0.9 hypothetical protein compare
Atu4583 +0.3 1.7 superoxide dismutase compare
Atu2208 +0.3 1.9 secretion chaperone compare
Atu3230 +0.3 1.7 hypothetical protein compare
Atu4671 +0.3 0.8 response regulator compare
Atu6075 +0.3 1.3 ABC transporter, membrane spanning protein (peptide) compare
Atu1831 +0.3 1.8 hypothetical protein compare
Atu2316 +0.3 1.7 hypothetical protein compare
Atu2773 +0.3 1.6 hypothetical protein compare
Atu1816 +0.3 1.9 ABC transporter, nucleotide binding/ATPase protein compare
Atu0953 +0.3 0.5 hypothetical protein compare
Atu0892 +0.3 1.2 hypothetical protein compare
Atu3381 +0.3 1.5 LysR family transcriptional regulator compare
Atu3757 +0.3 0.6 hypothetical protein compare
Atu2013 +0.3 2.1 ABC transporter, membrane spanning protein compare
Atu0267 +0.3 1.4 hypothetical protein compare
Atu3878 +0.3 2.1 transcriptional regulator compare
Atu4338 +0.3 1.4 hypothetical protein compare
Atu5158 +0.3 0.9 hypothetical protein compare
Atu3017 +0.3 0.5 phosphoglyceromutase compare
Atu0070 +0.3 2.0 ribonucleoside-diphosphate reductase 2 alpha chain compare
Atu4100 +0.3 1.6 hypothetical protein compare
Atu0431 +0.3 1.2 apaG protein compare
Atu0781 +0.3 0.9 hypothetical protein compare
Atu5505 +0.3 1.2 two component response regulator compare
Atu2113 +0.3 0.9 N-acetylmuramoyl-L-alanine amidase compare
Atu1398 +0.3 1.4 ABC transporter, membrane spanning protein (amino acid) compare
Atu5008 +0.3 1.1 hypothetical protein compare
Atu1500 +0.3 1.6 rare lipoprotein A compare
Atu3168 +0.3 1.1 sorbitol/mannitol ABC transporter permease compare
Atu2583 +0.3 2.0 glycosyltransferase compare
Atu3986 +0.3 1.5 hypothetical protein compare
Atu3158 +0.3 1.4 ABC transporter substrate binding protein compare


Specific Phenotypes

For 10 genes in this experiment

For nitrogen source Sodium nitrate in Agrobacterium fabrum C58

For nitrogen source Sodium nitrate across organisms