Experiment set3IT005 for Pseudomonas simiae WCS417

Compare to:

L-Alanine carbon source

200 most important genes:

  gene name fitness t score description  
PS417_01855 -7.3 -4.7 phosphoribosyl-AMP cyclohydrolase compare
PS417_28220 -7.2 -5.0 LysR family transcriptional regulator compare
PS417_18595 -6.3 -5.1 3-isopropylmalate dehydratase compare
PS417_18600 -6.1 -4.3 isopropylmalate isomerase compare
PS417_27705 -6.0 -2.4 amino acid dehydrogenase compare
PS417_27040 -6.0 -3.3 3-phosphoglycerate dehydrogenase compare
PS417_18585 -6.0 -7.1 3-isopropylmalate dehydrogenase compare
PS417_07640 -5.9 -5.3 glyceraldehyde-3-phosphate dehydrogenase compare
PS417_23545 -5.7 -4.0 gamma-glutamyl kinase compare
PS417_26740 -5.6 -13.1 homoserine acetyltransferase compare
PS417_04415 -5.6 -9.3 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PS417_25725 -5.5 -17.2 anthranilate synthase component I compare
PS417_23800 -5.4 -12.5 ketol-acid reductoisomerase compare
PS417_18560 -5.3 -14.2 N-(5'-phosphoribosyl)anthranilate isomerase compare
PS417_24745 -5.3 -5.1 gamma-glutamyl phosphate reductase compare
PS417_23805 -5.3 -7.2 acetolactate synthase 3 regulatory subunit compare
PS417_25720 -5.1 -9.0 anthranilate synthase component II compare
PS417_27795 -5.0 -2.0 orotate phosphoribosyltransferase compare
PS417_23810 -4.9 -11.3 acetolactate synthase 3 catalytic subunit compare
PS417_00185 -4.9 -4.7 tryptophan synthase subunit beta compare
PS417_04420 -4.8 -10.6 histidinol dehydrogenase compare
PS417_01565 -4.8 -5.0 imidazole glycerol phosphate synthase compare
PS417_02005 -4.8 -10.6 glutamate synthase compare
PS417_21705 -4.7 -7.2 arginine N-succinyltransferase compare
PS417_02510 -4.7 -5.2 ATP phosphoribosyltransferase regulatory subunit compare
PS417_02000 -4.6 -14.3 glutamate synthase compare
PS417_23995 -4.6 -1.8 preprotein translocase subunit SecG compare
PS417_05595 -4.6 -10.0 ornithine carbamoyltransferase compare
PS417_01575 -4.6 -5.1 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PS417_01850 -4.5 -10.1 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PS417_25715 -4.5 -6.4 anthranilate phosphoribosyltransferase compare
PS417_26745 -4.3 -7.1 methionine biosynthesis protein MetW compare
PS417_27710 -4.2 -8.0 AsnC family transcriptional regulator conserved
PS417_27195 -4.1 -2.2 N-acetylglutamate synthase compare
PS417_25710 -4.1 -2.3 indole-3-glycerol-phosphate synthase compare
PS417_18530 -3.9 -4.9 O-succinylhomoserine sulfhydrylase compare
PS417_24155 -3.9 -3.8 ATP-binding protein compare
PS417_27835 -3.9 -10.3 endoribonuclease compare
PS417_26730 -3.5 -2.0 pyrroline-5-carboxylate reductase compare
PS417_01605 -3.5 -3.4 phosphoglycerate mutase compare
PS417_23110 -3.4 -7.0 2-isopropylmalate synthase compare
PS417_26995 -3.4 -10.4 phosphoserine phosphatase compare
PS417_12855 -3.4 -7.0 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_04365 -3.4 -1.7 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase compare
PS417_02415 -3.3 -6.3 phosphoserine phosphatase compare
PS417_05405 -3.3 -12.9 L-alanine and D-alanine permease (from data) conserved
PS417_26890 -3.2 -7.5 dihydroxy-acid dehydratase compare
PS417_08220 -3.0 -1.7 epimerase compare
PS417_01580 -3.0 -2.8 imidazole glycerol phosphate synthase compare
PS417_01560 -3.0 -4.4 imidazoleglycerol-phosphate dehydratase compare
PS417_00180 -2.9 -4.4 tryptophan synthase subunit alpha compare
PS417_12290 -2.9 -6.9 sulfite reductase compare
PS417_23770 -2.9 -4.1 exodeoxyribonuclease V subunit alpha compare
PS417_06375 -2.7 -1.8 deoxycytidine triphosphate deaminase compare
PS417_08125 -2.7 -2.1 prephenate dehydratase compare
PS417_20160 -2.6 -2.9 cysteine synthase compare
PS417_20985 -2.4 -3.8 porin compare
PS417_27435 -2.3 -9.4 polyphosphate kinase compare
PS417_21700 -2.3 -6.6 arginine N-succinyltransferase compare
PS417_26985 -2.1 -5.6 phosphoenolpyruvate-protein phosphotransferase compare
PS417_08230 -1.9 -3.2 lipopolysaccharide biosynthesis protein RfbH compare
PS417_15285 -1.9 -1.8 type VI secretion protein compare
PS417_01210 -1.9 -10.7 hypothetical protein compare
PS417_01570 -1.8 -1.2 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase compare
PS417_06175 -1.8 -5.7 cysteine sulfinate desulfinase compare
PS417_16465 -1.8 -5.2 sirohydrochlorin ferrochelatase compare
PS417_01710 -1.7 -5.5 histidine utilization repressor compare
PS417_03925 -1.7 -7.2 nicotinate-nucleotide pyrophosphorylase compare
PS417_07170 -1.6 -3.2 hypothetical protein compare
PS417_26695 -1.6 -1.8 uracil phosphoribosyltransferase compare
PS417_21690 -1.6 -4.1 N-succinylarginine dihydrolase compare
PS417_05570 -1.5 -6.2 DeoR faimly transcriptional regulator compare
PS417_09210 -1.5 -2.0 TetR family transcriptional regulator compare
PS417_06165 -1.5 -4.0 thiamine biosynthesis protein ThiF compare
PS417_26850 -1.5 -1.2 twin-arginine translocation pathway signal protein compare
PS417_24835 -1.4 -5.7 hypothetical protein compare
PS417_18690 -1.4 -3.0 aromatic amino acid aminotransferase compare
PS417_23380 -1.4 -2.8 cytochrome o ubiquinol oxidase subunit III compare
PS417_21020 -1.4 -9.0 phosphoenolpyruvate synthase conserved
PS417_19095 -1.4 -1.6 hypothetical protein compare
PS417_22385 -1.4 -8.2 quinolinate synthase A compare
PS417_13140 -1.4 -2.5 oxidoreductase compare
PS417_21125 -1.3 -5.3 phosphoadenosine phosphosulfate reductase compare
PS417_05455 -1.3 -4.9 XRE family transcriptional regulator compare
PS417_08195 -1.3 -6.6 hypothetical protein compare
PS417_14070 -1.3 -1.5 hypothetical protein compare
PS417_05165 -1.3 -3.0 cytosol aminopeptidase compare
PS417_26005 -1.2 -7.1 biotin synthase compare
PS417_08130 -1.2 -2.0 aspartate aminotransferase compare
PS417_22445 -1.2 -3.8 ATP-dependent DNA helicase RuvB compare
PS417_15935 -1.2 -2.1 Rrf2 family transcriptional regulator compare
PS417_02690 -1.1 -5.6 N-acylglucosamine 2-epimerase compare
PS417_25985 -1.1 -2.4 dethiobiotin synthetase compare
PS417_04180 -1.1 -4.0 GntR family transcriptional regulator compare
PS417_18590 -1.1 -2.6 SAM-dependent methyltransferase compare
PS417_12730 -1.1 -1.8 glycosyltransferase compare
PS417_13510 -1.1 -1.4 polyketide cyclase compare
PS417_01095 -1.1 -1.3 amino acid ABC transporter ATP-binding protein compare
PS417_08155 -1.1 -2.7 integration host factor subunit beta compare
PS417_20635 -1.1 -1.1 ABC transporter ATP-binding protein compare
PS417_01995 -1.1 -1.9 hypothetical protein compare
PS417_08245 -1.1 -1.1 CDP-6-deoxy-L-threo-D-glycero-4-hexulose-3- dehydrase reductase compare
PS417_19065 -1.0 -1.2 monooxygenase compare
PS417_04875 -1.0 -1.4 molybdenum cofactor biosynthesis protein MoaE compare
PS417_20125 -1.0 -2.8 phosphoribosylglycinamide formyltransferase compare
PS417_05100 -1.0 -1.9 RNA polymerase sigma factor compare
PS417_22945 -1.0 -2.3 phosphoribosylglycinamide formyltransferase compare
PS417_09605 -1.0 -2.2 glycosyl transferase compare
PS417_15135 -1.0 -1.7 hypothetical protein compare
PS417_13755 -1.0 -2.1 oxidoreductase compare
PS417_08410 -1.0 -2.8 hypothetical protein compare
PS417_23315 -1.0 -1.4 transcriptional regulator compare
PS417_23900 -1.0 -5.6 poly(A) polymerase compare
PS417_08380 -0.9 -4.0 ABC transporter ATP-binding protein compare
PS417_23390 -0.9 -3.8 ubiquinol oxidase subunit II compare
PS417_24260 -0.9 -4.5 glutamate dehydrogenase compare
PS417_26000 -0.9 -5.2 8-amino-7-oxononanoate synthase compare
PS417_17855 -0.9 -1.8 major facilitator transporter compare
PS417_08225 -0.9 -3.9 acetolactate synthase compare
PS417_07595 -0.9 -2.6 PasA protein compare
PS417_09695 -0.9 -1.4 hydrolase compare
PS417_26040 -0.9 -2.5 malate synthase compare
PS417_06200 -0.9 -2.7 protein-PII uridylyltransferase compare
PS417_19675 -0.9 -3.0 chemotaxis protein CheY compare
PS417_15470 -0.9 -3.4 saccharopine dehydrogenase compare
PS417_06645 -0.9 -5.1 RNA polymerase-associated protein RapA compare
PS417_04860 -0.9 -4.2 ATPase compare
PS417_23370 -0.8 -3.5 protoheme IX farnesyltransferase compare
PS417_05815 -0.8 -3.5 recombinase RecA compare
PS417_20140 -0.8 -1.6 nucleoprotein/polynucleotide-associated enzyme compare
PS417_08205 -0.8 -1.7 acetyltransferase compare
PS417_22210 -0.8 -1.4 AraC family transcriptional regulator compare
PS417_16055 -0.8 -1.9 biopolymer transporter TolR compare
PS417_17240 -0.8 -2.4 trigger factor compare
PS417_22060 -0.8 -1.4 hypothetical protein compare
PS417_19885 -0.8 -1.6 flagellar basal body rod protein FlgG compare
PS417_19335 -0.8 -2.1 isochorismatase compare
PS417_09915 -0.8 -1.5 hypothetical protein compare
PS417_06830 -0.8 -1.9 hypothetical protein compare
PS417_20665 -0.8 -3.4 hypothetical protein compare
PS417_23385 -0.8 -3.8 cytochrome o ubiquinol oxidase subunit I compare
PS417_01715 -0.8 -1.3 hypothetical protein compare
PS417_03260 -0.8 -1.4 5S ribosomal RNA compare
PS417_03045 -0.7 -1.8 hypothetical protein compare
PS417_21510 -0.7 -1.6 histidine kinase compare
PS417_08580 -0.7 -3.1 histidine kinase compare
PS417_26540 -0.7 -4.8 adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
PS417_16990 -0.7 -4.1 acyl-CoA dehydrogenase compare
PS417_11180 -0.7 -2.2 TetR family transcriptional regulator compare
PS417_05825 -0.7 -2.1 cytochrome D ubiquinol oxidase subunit II compare
PS417_19425 -0.7 -0.8 allantoicase compare
PS417_08945 -0.7 -3.6 heat shock protein 90 compare
PS417_14515 -0.7 -1.4 acetylglucosaminylphosphatidylinositol deacetylase compare
PS417_21595 -0.7 -2.6 flagellar biosynthesis protein FlgN compare
PS417_27870 -0.7 -2.5 ATP-dependent DNA helicase RecG compare
PS417_09830 -0.7 -2.9 6-carboxy-5,6,7,8-tetrahydropterin synthase compare
PS417_25990 -0.7 -4.2 malonyl-CoA O-methyltransferase compare
PS417_17350 -0.7 -2.1 copper resistance protein CopD compare
PS417_04050 -0.7 -1.5 peptide ABC transporter ATP-binding protein compare
PS417_08365 -0.7 -0.8 hypothetical protein compare
PS417_25380 -0.7 -2.0 hypothetical protein compare
PS417_14305 -0.7 -2.6 hydroxyproline-2-epimerase compare
PS417_17780 -0.7 -1.1 Ais protein compare
PS417_18040 -0.6 -1.2 general secretion pathway protein GspN compare
PS417_20055 -0.6 -1.3 cob(II)yrinic acid a,c-diamide reductase compare
PS417_00650 -0.6 -0.7 LysR family transcriptional regulator compare
PS417_22580 -0.6 -1.7 membrane protein compare
PS417_15780 -0.6 -1.9 membrane protein compare
PS417_04435 -0.6 -4.3 uracil phosphoribosyltransferase compare
PS417_08200 -0.6 -2.5 hypothetical protein compare
PS417_12945 -0.6 -2.1 sulfonate ABC transporter ATP-binding protein compare
PS417_10025 -0.6 -1.1 bacteriophage lambda NinG family protein compare
PS417_20915 -0.6 -2.0 hypothetical protein compare
PS417_18025 -0.6 -1.8 cytochrome C compare
PS417_26560 -0.6 -4.0 amino acid dehydrogenase compare
PS417_05695 -0.6 -3.1 transcriptional regulator compare
PS417_19840 -0.6 -4.0 flagellar cap protein FliD compare
PS417_22570 -0.6 -0.8 H-NS histone compare
PS417_15915 -0.6 -1.0 hypothetical protein compare
PS417_03560 -0.6 -1.7 GTP-binding protein compare
PS417_17580 -0.6 -2.3 citrulline utilization hydrolase (from data) compare
PS417_28515 -0.6 -1.9 16S rRNA methyltransferase compare
PS417_19860 -0.6 -4.6 flagellar hook protein FlgL compare
PS417_09160 -0.6 -2.0 GNAT family acetyltransferase compare
PS417_24585 -0.6 -4.5 AMP nucleosidase compare
PS417_08180 -0.6 -4.0 glycosyl transferase compare
PS417_16195 -0.6 -0.8 AraC family transcriptional regulator compare
PS417_15225 -0.6 -2.1 alpha/beta hydrolase compare
PS417_27815 -0.6 -1.0 hypothetical protein compare
PS417_26515 -0.6 -2.2 hypothetical protein compare
PS417_19835 -0.6 -1.0 flagellar biosynthesis protein FliS compare
PS417_14940 -0.6 -1.4 LysR family transcriptional regulator compare
PS417_11280 -0.6 -2.1 HxcX atypical pseudopilin compare
PS417_14235 -0.6 -2.9 hypothetical protein compare
PS417_24630 -0.6 -2.3 ATP-binding protein compare
PS417_27930 -0.6 -2.2 type VI secretion protein compare
PS417_05965 -0.6 -1.8 chemotaxis protein CheW compare
PS417_24230 -0.6 -3.3 ATP-dependent protease compare
PS417_15885 -0.6 -0.6 GCN5 family acetyltransferase compare
PS417_17595 -0.6 -1.9 amino acid ABC transporter permease compare


Specific Phenotypes

For 5 genes in this experiment

For carbon source L-Alanine in Pseudomonas simiae WCS417

For carbon source L-Alanine across organisms