Experiment set3IT005 for Pseudomonas simiae WCS417

Compare to:

L-Alanine carbon source

200 most detrimental genes:

  gene name fitness t score description  
PS417_19825 +1.4 8.9 ATPase AAA compare
PS417_08920 +1.2 7.8 branched-chain amino acid ABC transporter substrate-binding protein conserved
PS417_27245 +1.1 5.4 aminotransferase DegT compare
PS417_14755 +0.9 1.9 UV damage repair endonuclease UvdE compare
PS417_11950 +0.9 1.9 hypothetical protein compare
PS417_01410 +0.9 3.3 transporter compare
PS417_27135 +0.9 1.6 glutamine synthetase compare
PS417_02485 +0.9 5.5 tRNA delta(2)-isopentenylpyrophosphate transferase compare
PS417_00705 +0.9 2.8 MarR family transcriptional regulator compare
PS417_21740 +0.9 5.3 ABC transporter for L-Arginine, permease component 1 (from data) compare
PS417_01405 +0.9 2.9 sugar transporter compare
PS417_17550 +0.9 3.1 branched-chain alpha-ketoacid dehydrogenase, E1 component beta subunit (EC 1.2.4.4) (from data) compare
PS417_05975 +0.8 1.0 chemotaxis protein CheW compare
PS417_02270 +0.8 3.5 carbamoyltransferase compare
PS417_01420 +0.8 6.1 histidine kinase compare
PS417_04650 +0.8 2.1 D-alanine--D-alanine ligase compare
PS417_15035 +0.8 1.7 alkylhydroperoxidase compare
PS417_03810 +0.8 1.7 hypothetical protein compare
PS417_26275 +0.8 2.2 glycine/betaine ABC transporter substrate-binding protein compare
PS417_11535 +0.8 1.9 nicotinate phosphoribosyltransferase compare
PS417_05445 +0.8 1.6 DNA mismatch repair protein MutT compare
PS417_28050 +0.7 2.8 hypothetical protein compare
PS417_08825 +0.7 1.9 TetR family transcriptional regulator compare
PS417_11230 +0.7 3.6 hydroxyacid dehydrogenase compare
PS417_01395 +0.7 5.8 biofilm formation protein PelB compare
PS417_19605 +0.7 1.6 hypothetical protein compare
PS417_01390 +0.7 5.2 PbsX family transcriptional regulator compare
PS417_21745 +0.7 4.2 ABC transporter for L-Arginine, substrate-binding component (from data) compare
PS417_21735 +0.7 5.3 ABC transporter for L-Arginine, permease component 2 (from data) compare
PS417_18755 +0.7 1.1 CrtK compare
PS417_07865 +0.7 1.3 hypothetical protein compare
PS417_14110 +0.7 3.0 2-nitropropane dioxygenase compare
PS417_07870 +0.7 2.2 hypothetical protein compare
PS417_06365 +0.7 4.4 RNA polymerase sigma factor compare
PS417_08025 +0.7 1.5 acetylornithine aminotransferase compare
PS417_14995 +0.7 2.5 serine/threonine protein kinase compare
PS417_28135 +0.7 4.7 sodium:alanine symporter compare
PS417_06335 +0.7 1.9 S-formylglutathione hydrolase compare
PS417_17490 +0.7 1.4 ABC transporter ATP-binding protein compare
PS417_08335 +0.7 1.5 hypothetical protein compare
PS417_02365 +0.7 2.0 hypothetical protein compare
PS417_19830 +0.7 1.8 flagellar assembly protein FliT compare
PS417_16160 +0.7 2.1 ABC transporter substrate-binding protein compare
PS417_01400 +0.6 2.1 hypothetical protein compare
PS417_03525 +0.6 1.4 hypothetical protein compare
PS417_04530 +0.6 1.9 glycerate dehydrogenase compare
PS417_01825 +0.6 1.7 chemotaxis protein compare
PS417_17840 +0.6 1.2 betaine-aldehyde dehydrogenase compare
PS417_00470 +0.6 3.8 glutamate:protein symporter compare
PS417_10855 +0.6 2.4 chemotaxis protein CheY compare
PS417_21625 +0.6 1.0 DNA-binding protein compare
PS417_01440 +0.6 2.7 hypothetical protein compare
PS417_26835 +0.6 1.8 3-mercaptopyruvate sulfurtransferase compare
PS417_26420 +0.6 1.5 hypothetical protein compare
PS417_15840 +0.6 2.8 histidine kinase compare
PS417_18070 +0.6 1.0 general secretion pathway protein GspH compare
PS417_25645 +0.6 3.2 peptidase M23 compare
PS417_08620 +0.6 1.0 hypothetical protein compare
PS417_01385 +0.6 2.9 NAD-dependent dehydratase compare
PS417_11375 +0.6 1.8 hypothetical protein compare
PS417_23405 +0.6 2.0 transcriptional regulator compare
PS417_24675 +0.6 1.8 lipoyl synthase compare
PS417_14890 +0.6 1.2 LysR family transcriptional regulator compare
PS417_09745 +0.6 2.4 peptide ABC transporter substrate-binding protein compare
PS417_03915 +0.6 2.2 tRNA-Thr compare
PS417_03455 +0.6 1.1 type III secretion protein compare
PS417_10810 +0.6 1.3 hypothetical protein compare
PS417_25825 +0.6 1.3 sulfurtransferase compare
PS417_06730 +0.6 0.8 3-carboxy-cis,cis-muconate cycloisomerase compare
PS417_13945 +0.6 2.1 GNAT family acetyltransferase compare
PS417_01945 +0.5 1.6 nuclease compare
PS417_26260 +0.5 0.7 hypothetical protein compare
PS417_01415 +0.5 3.9 glycosyl transferase family 1 compare
PS417_17690 +0.5 2.4 amidase compare
PS417_22620 +0.5 3.4 pyruvate kinase compare
PS417_06865 +0.5 1.4 transporter compare
PS417_15805 +0.5 1.2 transporter compare
PS417_14065 +0.5 2.9 UTP--glucose-1-phosphate uridylyltransferase compare
PS417_18165 +0.5 0.8 membrane protein compare
PS417_02980 +0.5 1.1 chemotaxis protein compare
PS417_26125 +0.5 1.3 glutathione S-transferase compare
PS417_05075 +0.5 3.2 serine dehydratase compare
PS417_17590 +0.5 1.1 ABC transporter substrate-binding protein compare
PS417_21475 +0.5 1.9 HAD family hydrolase compare
PS417_20855 +0.5 1.3 hypothetical protein compare
PS417_21565 +0.5 2.3 flagellar basal body rod protein FlgC compare
PS417_18945 +0.5 2.5 endoribonuclease compare
PS417_24885 +0.5 1.8 transcriptional regulator compare
PS417_05010 +0.5 1.5 IclR family transcriptional regulator compare
PS417_15865 +0.5 1.6 hypothetical protein compare
PS417_12515 +0.5 1.4 lactate dehydrogenase compare
PS417_08590 +0.5 1.5 hypothetical protein compare
PS417_07575 +0.5 2.1 multifunctional fatty acid oxidation complex subunit alpha compare
PS417_27800 +0.5 2.8 exodeoxyribonuclease III compare
PS417_16005 +0.5 1.2 ATPase compare
PS417_23135 +0.5 1.3 GTP-binding protein compare
PS417_02855 +0.5 2.0 histidinol phosphatase compare
PS417_09420 +0.5 1.4 LysR family transcriptional regulator compare
PS417_23465 +0.5 2.9 flavodoxin compare
PS417_22175 +0.5 0.9 amino acid transporter LysE compare
PS417_01790 +0.5 2.8 glucan biosynthesis protein G compare
PS417_13055 +0.5 1.2 aminotransferase compare
PS417_01180 +0.5 3.1 ribosomal protein S6 modification protein compare
PS417_04500 +0.5 1.1 hypothetical protein compare
PS417_06100 +0.5 1.4 SAM-dependent methyltransferase compare
PS417_05365 +0.5 1.0 FAD-binding protein compare
PS417_12110 +0.5 1.4 ATP-binding protein compare
PS417_27940 +0.5 0.8 type VI secretion protein compare
PS417_03400 +0.5 2.2 D-alanine--D-alanine ligase compare
PS417_15750 +0.5 1.8 protease compare
PS417_22690 +0.5 1.4 phosphogluconate dehydratase compare
PS417_12455 +0.5 1.1 hydrolase compare
PS417_14315 +0.5 1.1 2,5-dioxovalerate dehydrogenase compare
PS417_17925 +0.5 1.2 acyl-CoA dehydrogenase compare
PS417_16720 +0.5 0.7 membrane protein compare
PS417_09595 +0.5 1.9 membrane protein compare
PS417_17680 +0.5 1.0 ABC transporter compare
PS417_13645 +0.5 1.1 ABC transporter compare
PS417_05080 +0.5 2.6 LysR family transcriptional regulator compare
PS417_10920 +0.5 1.0 LysR family transcriptional regulator compare
PS417_15875 +0.4 1.0 LuxR family transcriptional regulator compare
PS417_21065 +0.4 1.4 3-methylitaconate isomerase compare
PS417_20650 +0.4 2.6 hypothetical protein compare
PS417_01305 +0.4 1.8 Fis family transcriptional regulator compare
PS417_26750 +0.4 2.2 homoserine acetyltransferase compare
PS417_23715 +0.4 1.3 cupin compare
PS417_20880 +0.4 1.3 GntR family transcriptional regulator compare
PS417_07140 +0.4 1.9 peptidase M48 compare
PS417_27445 +0.4 3.2 membrane protein compare
PS417_18355 +0.4 3.3 DNA-binding protein compare
PS417_14280 +0.4 0.9 hypothetical protein compare
PS417_26470 +0.4 1.4 cytochrome C compare
PS417_01435 +0.4 0.8 hypothetical protein compare
PS417_01970 +0.4 1.2 pilus assembly protein compare
PS417_15045 +0.4 2.2 cupin compare
PS417_28010 +0.4 2.2 pyridine nucleotide-disulfide oxidoreductase compare
PS417_26530 +0.4 0.9 hypothetical protein compare
PS417_10575 +0.4 1.7 DNA alkylation repair protein compare
PS417_20720 +0.4 1.5 cbb3-type cytochrome c oxidase subunit I compare
PS417_22705 +0.4 1.1 glycerol-3-phosphate ABC transporter substrate-binding protein compare
PS417_17545 +0.4 1.7 2-oxoisovalerate dehydrogenase compare
PS417_00755 +0.4 0.5 biofilm PGA synthesis protein PgaD compare
PS417_14605 +0.4 0.9 adenylate kinase compare
PS417_27315 +0.4 0.8 hypothetical protein compare
PS417_08185 +0.4 2.0 glycosyl transferase compare
PS417_20520 +0.4 1.0 3-phosphoglycerate kinase compare
PS417_17440 +0.4 1.2 beta-lactamase compare
PS417_00510 +0.4 0.7 membrane protein compare
PS417_07465 +0.4 2.1 LysR family transcriptional regulator compare
PS417_05830 +0.4 2.1 hypothetical protein compare
PS417_23635 +0.4 2.3 membrane protein compare
PS417_01915 +0.4 0.7 ATP-dependent protease ATP-binding subunit HslU compare
PS417_05500 +0.4 2.1 2,3-diketo-5-methylthio-1-phosphopentane phosphatase compare
PS417_06480 +0.4 1.3 hypothetical protein compare
PS417_10675 +0.4 0.7 TetR family transcriptional regulator compare
PS417_10370 +0.4 1.1 ATPase compare
PS417_18865 +0.4 1.6 hypothetical protein compare
PS417_00550 +0.4 0.7 hypothetical protein compare
PS417_16285 +0.4 2.4 diguanylate cyclase compare
PS417_13640 +0.4 1.3 ribose ABC transporter permease compare
PS417_01795 +0.4 3.0 glucosyltransferase MdoH compare
PS417_10330 +0.4 1.4 histidine kinase compare
PS417_15325 +0.4 0.7 type VI secretion protein compare
PS417_06735 +0.4 1.3 3-oxoadipate enol-lactonase compare
PS417_10445 +0.4 1.1 LysR family transcriptional regulator compare
PS417_28035 +0.4 2.0 transcriptional regulator PhoB compare
PS417_00515 +0.4 2.7 membrane protein compare
PS417_15890 +0.4 0.9 RNA polymerase sigma factor compare
PS417_16400 +0.4 0.8 NAD(P)H-quinone oxidoreductase compare
PS417_26195 +0.4 1.8 serine hydroxymethyltransferase compare
PS417_16100 +0.4 1.3 antibiotic biosynthesis monooxygenase compare
PS417_06370 +0.4 1.0 cold-shock protein compare
PS417_19505 +0.4 1.2 2,4-diaminobutyrate 4-aminotransferase compare
PS417_01230 +0.4 1.8 hypothetical protein compare
PS417_07440 +0.4 1.3 cyclic nucleotide-binding protein compare
PS417_16845 +0.4 1.6 monovalent cation/H+ antiporter subunit E compare
PS417_24990 +0.4 1.3 exotoxin compare
PS417_11575 +0.4 1.8 spermidine/putrescine ABC transporter ATPase compare
PS417_23535 +0.4 1.0 glutathione peroxidase compare
PS417_18760 +0.4 1.2 hypothetical protein compare
PS417_21850 +0.4 0.8 LysR family transcriptional regulator compare
PS417_10390 +0.4 1.4 RNA polymerase subunit sigma24 compare
PS417_11400 +0.4 0.8 phosphoglycerate mutase compare
PS417_24495 +0.4 2.6 NAD(FAD)-utilizing dehydrogenase compare
PS417_18020 +0.4 0.7 hypothetical protein compare
PS417_24275 +0.4 3.2 diguanylate phosphodiesterase compare
PS417_13545 +0.4 1.3 arginine aminotransferase compare
PS417_11965 +0.4 0.8 GCN5 family acetyltransferase compare
PS417_11305 +0.4 1.8 general secretion pathway protein GspF compare
PS417_19665 +0.4 1.7 flagellar motor protein MotD compare
PS417_07300 +0.4 1.8 LysR family transcriptional regulator compare
PS417_11175 +0.4 0.6 AraC family transcriptional regulator compare
PS417_11865 +0.4 1.0 xylose isomerase compare
PS417_06560 +0.4 1.5 membrane protein compare
PS417_26650 +0.4 2.4 histidine kinase compare
PS417_15775 +0.4 1.1 short-chain dehydrogenase compare
PS417_26605 +0.4 0.6 malonate decarboxylase subunit beta compare
PS417_13495 +0.4 1.5 nuclease compare
PS417_18455 +0.4 1.2 hypothetical protein compare
PS417_09340 +0.4 1.5 spermidine/putrescine ABC transporter ATP-binding protein compare


Specific Phenotypes

For 5 genes in this experiment

For carbon source L-Alanine in Pseudomonas simiae WCS417

For carbon source L-Alanine across organisms