Experiment set3IT005 for Agrobacterium fabrum C58

Compare to:

Ammonium chloride nitrogen source

200 most important genes:

  gene name fitness t score description  
Atu1750 -6.1 -4.5 phosphoribosyl c-AMP cyclohydrolase compare
Atu0017 -6.1 -4.2 N-(5-phosphoribosyl) anthranilate isomerase compare
Atu1687 -6.1 -11.8 anthranilate phosphoribosyltransferase compare
Atu0679 -5.6 -7.3 ATP phosphoribosyltransferase compare
Atu0043 -5.6 -3.8 imidazoleglycerol-phosphate dehydratase compare
Atu0537 -5.6 -7.6 histidinol dehydrogenase compare
Atu0099 -5.5 -12.3 prephenate dehydratase compare
Atu3706 -5.3 -11.4 D-3-phosphoglycerate dehydrogenase compare
Atu0678 -5.3 -9.5 histidyl-tRNA synthetase compare
Atu2289 -5.3 -22.7 anthranilate synthase component I and II compare
Atu1688 -5.1 -9.7 indole-3-glycerol-phosphate synthase compare
Atu3469 -5.1 -3.5 phosphoglyceromutase compare
Atu2040 -5.1 -7.7 phosphoserine phosphatase compare
Atu0035 -4.9 -12.8 phosphoenolpyruvate carboxykinase compare
Atu3707 -4.9 -5.5 phosphoserine aminotransferase compare
Atu0038 -4.8 -7.2 phosphoribosyl-ATP pyrophosphohydrolase compare
Atu2264 -4.8 -16.4 2-isopropylmalate synthase compare
Atu0039 -4.8 -3.3 imidazoleglycerol-phosphate synthase cyclase compare
Atu0400 -4.8 -7.9 orotate phosphoribosyltransferase compare
Atu2791 -4.7 -10.2 3-isopropylmalate dehydrogenase compare
Atu2709 -4.6 -22.0 3-isopropylmalate dehydratase, large subunit compare
Atu0041 -4.6 -4.4 glutamine amidotransferase compare
Atu1844 -4.6 -5.5 Phosphoribosylformylglycinamidine synthetase compare
Atu4505 -4.6 -10.8 LacI family transcriptional regulator compare
Atu3740 -4.4 -13.9 fructose bisphosphate aldolase compare
Atu1205 -4.3 -14.8 threonine dehydratase compare
Atu2650 -4.3 -12.5 glycerol-3-phosphate dehydrogenase compare
Atu1620 -4.1 -14.6 triosephosphate isomerase compare
Atu2036 -4.1 -18.3 acetolactate synthase III, large subunit compare
Atu0432 -4.0 -11.2 O-succinylhomoserine sulfhydrylase compare
Atu1588 -4.0 -11.1 homoserine dehydrogenase compare
Atu3755 -3.9 -8.2 phosphoribosylaminoimidazole carboxylase ATPase subunit compare
Atu1686 -3.9 -20.0 peptidyl-prolyl cis-trans isomerse D compare
Atu3739 -3.8 -4.8 phosphoglycerate kinase compare
Atu0399 -3.8 -10.7 dihydroorotase compare
Atu2747 -3.8 -15.7 hypothetical protein compare
Atu2790 -3.7 -2.6 3-isopropylmalate dehydratase, small subunit compare
Atu1075 -3.7 -9.6 amidophosphoribosyltransferase compare
Atu0298 -3.6 -9.8 orotidine 5 compare
Atu2718 -3.6 -12.4 homoserine O-succinyltransferase compare
Atu0647 -3.6 -8.6 phosphoribosylamine--glycine ligase compare
Atu3885 -3.5 -9.0 inositol monophosphatase compare
Atu3754 -3.5 -12.1 phosphoribosylaminoimidazole carboxylase catalytic subunit compare
Atu1456 -3.5 -13.8 sulfite reductase (NADPH) hemoprotein beta-component compare
Atu2115 -3.4 -12.7 pyrophosphate--fructose-6-phosphate 1-phosphotransferase compare
Atu0486 -3.3 -6.7 dihydroorotate dehydrogenase compare
Atu2015 -3.3 -13.6 aminotransferase compare
Atu3783 -3.3 -18.9 glutamate synthase subunit beta compare
Atu1140 -3.2 -5.4 phosphoribosyalaminoimidazole-succinocarboxamide synthase compare
Atu1307 -3.2 -5.8 dihydroorotase compare
Atu1446 -3.2 -4.6 two component response regulator compare
Atu0723 -3.1 -3.6 FAD dependent oxidoreductase compare
Atu1141 -3.0 -7.9 Phosphoribosylglycinamide synthetase compare
Atu1308 -3.0 -5.9 aspartate carbamoyl transferase catalytic subunit compare
Atu1030 -2.9 -2.2 GTP pyrophosphohydrolase/synthetase, RelA/SpoT family compare
Atu3784 -2.7 -19.9 glutamate synthase large subunit compare
Atu0332 -2.7 -13.2 RNA polymerase sigma-54 factor compare
Atu1845 -2.7 -7.6 phosphoribosylformylglycinamidine synthase I compare
Atu1454 -2.7 -8.4 siroheme synthase compare
Atu1589 -2.6 -8.7 aminotransferase, class I compare
Atu1850 -2.6 -5.1 phosphoribosylformylglycinamidine synthetase II compare
Atu3482 -2.5 -8.6 pantoate--beta-alanine ligase compare
Atu0422 -2.4 -3.7 ABC transporter, membrane spanning protein compare
Atu3483 -2.4 -8.8 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
Atu3730 -2.4 -2.9 hypothetical protein compare
Atu0040 -2.3 -1.8 phosphoribosylformino-5-aminoimidazole carboxamide ribotide isomerase compare
Atu2548 -2.2 -14.1 phosphoribosylaminoimidazole-succinocarboxamide synthase compare
Atu2640 -2.2 -6.4 hypothetical protein compare
Atu3296 -2.0 -11.2 two component response regulator for C4-dicarboxylate transport compare
Atu1455 -2.0 -5.4 hypothetical protein compare
Atu3298 -2.0 -12.4 C4-dicarboxylate transporter DctA compare
Atu3297 -1.9 -12.8 two component sensor kinase for C4-dicarboxylate transport compare
Atu1464 -1.9 -9.0 glycine cleavage system T protein, aminomethyltransferase compare
Atu3731 -1.9 -7.8 5-formyltetrahydrofolate cyclo-ligase compare
Atu5468 -1.8 -2.2 hypothetical protein compare
Atu0029 -1.8 -7.8 S-adenosylhomocysteine hydrolase compare
Atu1685 -1.8 -1.7 hypothetical protein compare
Atu1462 -1.8 -11.3 glycine cleavage system protein P2 compare
Atu4096 -1.8 -8.4 nicotinate-nucleotide pyrophosphorylase compare
Atu0346 -1.7 -2.3 uridylyltransferase/uridylyl-removing enzyme UTase compare
Atu6189 -1.7 -1.0 protein secretion chaperone compare
Atu1359 -1.7 -1.7 dnaK deletion suppressor protein compare
Atu4097 -1.5 -9.2 L-aspartate oxidase compare
Atu8115 -1.5 -4.6 Hypothetical Protein compare
Atu4098 -1.5 -8.8 quinolinate synthetase compare
Atu0641 -1.4 -4.4 hypothetical protein compare
Atu2155 -1.4 -10.8 methionine synthase compare
Atu2209 -1.4 -5.3 pyrroline-5-carboxylate reductase compare
Atu3763 -1.4 -2.7 hypothetical protein compare
Atu2439 -1.4 -2.1 hypothetical protein compare
Atu1463 -1.4 -5.8 glycine cleavage system component H compare
Atu0769 -1.4 -2.5 protoheme IX farnesyltransferase compare
Atu3008 -1.3 -1.3 hypothetical protein compare
Atu1457 -1.3 -1.7 hypothetical protein compare
Atu0971 -1.3 -4.8 two component sensor kinase compare
Atu5115 -1.3 -1.4 hypothetical protein compare
Atu2376 -1.2 -1.1 hypothetical protein compare
Atu1748 -1.2 -5.2 NIFU-like protein compare
Atu0434 -1.2 -3.3 2'-deoxycytidine 5'-triphosphate deaminase compare
Atu0141 -1.2 -2.0 cytochrome O ubiquinol oxidase subunit I compare
Atu0149 -1.1 -3.2 enoyl-(acyl-carrier-protein) reductase compare
Atu5513 -1.1 -1.2 cold shock protein compare
Atu2125 -1.0 -1.9 ABC transporter, nucleotide binding/ATPase protein compare
Atu2020 -1.0 -3.3 transcriptional regulator, TetR family compare
Atu0836 -1.0 -3.0 Glutathione-S-transferase compare
Atu5146 -1.0 -1.1 hypothetical protein compare
Atu2433 -1.0 -1.5 hypothetical protein compare
Atu5540 -0.9 -0.5 hypothetical protein compare
Atu4217 -0.9 -1.7 TetR family transcriptional regulator compare
Atu0086 -0.9 -1.3 ribosome-binding factor A compare
Atu3663 -0.9 -1.0 hypothetical protein compare
Atu5475 -0.9 -0.8 hypothetical protein compare
Atu4882 -0.9 -2.2 hypothetical protein compare
Atu3012 -0.8 -1.1 hypothetical protein compare
Atu1163 -0.8 -1.5 exopolysaccharide II synthesis transcriptional activator ExpG compare
Atu1774 -0.8 -5.3 ABC transporter, substrate binding protein (peptide) compare
Atu0876 -0.8 -1.5 superoxide dismutase compare
Atu1952 -0.8 -1.2 hypothetical protein compare
Atu5104 -0.8 -2.7 hypothetical protein compare
Atu6114 -0.8 -1.2 hypothetical protein compare
Atu0501 -0.7 -6.0 acyl-CoA dehydrogenase compare
Atu0331 -0.7 -1.5 sigma-54 modulation protein compare
Atu2205 -0.7 -1.8 transcriptional regulator, MarR family compare
Atu0354 -0.7 -1.9 ferric uptake regulator compare
Atu1754 -0.7 -1.5 hypothetical protein compare
Atu5538 -0.7 -2.4 hypothetical protein compare
Atu2827 -0.7 -2.2 hypothetical protein compare
Atu5457 -0.7 -2.7 dihydrodipicolinate synthase compare
Atu2710 -0.7 -4.1 hypothetical protein compare
Atu8056 -0.7 -1.1 hypothetical protein compare
Atu0190 -0.7 -3.8 ABC transporter, nucleotide binding/ATPase protein (peptide) compare
Atu5543 -0.7 -3.3 AraC family transcriptional regulator compare
Atu0025 -0.7 -2.2 hypothetical protein compare
Atu4890 -0.7 -1.3 IS426 transposase compare
Atu3429 -0.7 -1.2 hypothetical protein compare
Atu4869 -0.7 -2.7 hypothetical protein compare
Atu3289 -0.7 -2.2 thiamine-phosphate pyrophosphorylase compare
Atu0421 -0.7 -1.1 ABC transporter, membrane spanning protein compare
Atu4166 -0.7 -1.8 UDP-glucose 4-epimerase compare
Atu5429 -0.7 -1.4 transcriptional regulator compare
Atu5486 -0.7 -1.9 hypothetical protein compare
Atu0031 -0.7 -1.1 PTS system, IIA component compare
Atu5054 -0.6 -1.5 hypothetical protein compare
Atu5159 -0.6 -1.4 hypothetical protein compare
Atu0941 -0.6 -0.8 hypothetical protein compare
Atu3997 -0.6 -5.4 biotin synthetase compare
Atu0188 -0.6 -2.5 ABC transporter, membrane spanning protein (peptide) compare
Atu3290 -0.6 -3.2 phosphomethylpyrimidine kinase compare
Atu2728 -0.6 -2.6 beta (1-->2) glucan export ATP-binding protein compare
Atu1581 -0.6 -1.6 hypothetical protein compare
Atu2127 -0.6 -3.8 L-carnitine dehydratase compare
Atu3496 -0.6 -2.7 hypothetical protein compare
Atu3120 -0.6 -1.0 hypothetical protein compare
Atu1339 -0.6 -2.0 ribonuclease E compare
Atu6067 -0.6 -2.0 conserved hypothetical protein compare
Atu2684 -0.6 -1.1 hypothetical protein compare
Atu4317 -0.6 -2.2 TetR family transcriptional regulator compare
Atu3288 -0.6 -3.1 hydroxyethylthiazole kinase compare
Atu0702 -0.6 -1.5 calcium-binding protein, regucalcin compare
Atu8087 -0.6 -0.8 putative peptidoglycan binding protein compare
Atu1694 -0.6 -1.9 hypothetical protein compare
Atu0142 -0.6 -1.5 cytochrome o ubiquinol oxidase subunit II compare
Atu2207 -0.6 -2.0 two component sensor kinase compare
Atu0659 -0.6 -2.3 NTP pyrophosphohydrolase, MutT family compare
Atu4897 -0.6 -0.9 hypothetical protein compare
Atu4502 -0.6 -2.9 cobalamin synthesis protein compare
Atu0291 -0.6 -3.3 hypothetical protein compare
Atu5109 -0.6 -1.2 conjugal transfer protein compare
Atu5166 -0.6 -1.8 type IV secretion protein AvhB5 compare
Atu8138 -0.6 -1.2 hypothetical protein compare
Atu6112 -0.6 -1.2 conserved hypothetical protein compare
Atu1232 -0.6 -1.1 hypothetical protein compare
Atu5171 -0.6 -2.3 type IV secretion protein AvhB10 compare
Atu5026 -0.6 -2.0 hypothetical protein compare
Atu0189 -0.6 -2.1 ABC transporter, membrane spanning protein (peptide) compare
Atu4878 -0.6 -2.2 hypothetical protein compare
Atu4407 -0.6 -1.6 periplasmic nitrate reductase, NapD protein compare
Atu3998 -0.5 -3.0 8-amino-7-oxononanoate synthase compare
Atu4001 -0.5 -3.1 3-oxoacyl-ACP synthase compare
Atu5455 -0.5 -1.6 hypothetical protein compare
Atu4888 -0.5 -2.3 hypothetical protein compare
Atu5443 -0.5 -1.5 TetR family transcriptional regulator compare
Atu4290 -0.5 -1.2 hypothetical protein compare
Atu0977 -0.5 -1.6 serine protease DO-like protease compare
Atu5512 -0.5 -1.9 hypothetical protein compare
Atu4000 -0.5 -4.3 adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
Atu0375 -0.5 -1.5 small heat shock protein compare
Atu8165 -0.5 -1.6 hypothetical protein compare
Atu0837 -0.5 -2.9 transcriptional regulator, MarR family compare
Atu0166 -0.5 -2.1 hypothetical protein compare
Atu3485 -0.5 -3.7 short chain dehydrogenase compare
Atu1076 -0.5 -2.5 colicin V production protein compare
Atu1891 -0.5 -1.8 cobalamin biosynthesis protein compare
Atu2569 -0.5 -3.2 thiamine biosynthesis protein compare
Atu2832 -0.5 -2.1 tRNA modification GTPase compare
Atu0533 -0.5 -1.4 putative inhibitor of septum formation compare
Atu1737 -0.5 -1.0 hypothetical protein compare
Atu3467 -0.5 -1.3 hypothetical protein compare
Atu0050 -0.5 -2.4 two component response regulator compare
Atu4615 -0.5 -3.3 glucose-1-phosphate thymidylyltransferase compare


Specific Phenotypes

For 3 genes in this experiment

For nitrogen source Ammonium chloride in Agrobacterium fabrum C58

For nitrogen source Ammonium chloride across organisms