Experiment set3IT004 for Agrobacterium fabrum C58

Compare to:

Ammonium chloride nitrogen source

200 most important genes:

  gene name fitness t score description  
Atu3707 -6.6 -4.5 phosphoserine aminotransferase compare
Atu0017 -6.1 -4.2 N-(5-phosphoribosyl) anthranilate isomerase compare
Atu2040 -5.5 -7.5 phosphoserine phosphatase compare
Atu0041 -5.5 -3.8 glutamine amidotransferase compare
Atu1687 -5.5 -12.0 anthranilate phosphoribosyltransferase compare
Atu1688 -5.4 -9.8 indole-3-glycerol-phosphate synthase compare
Atu2791 -5.3 -11.3 3-isopropylmalate dehydrogenase compare
Atu0537 -5.3 -8.9 histidinol dehydrogenase compare
Atu0679 -5.2 -9.5 ATP phosphoribosyltransferase compare
Atu0678 -5.1 -10.4 histidyl-tRNA synthetase compare
Atu0035 -5.0 -16.0 phosphoenolpyruvate carboxykinase compare
Atu2264 -4.9 -16.0 2-isopropylmalate synthase compare
Atu1750 -4.9 -7.7 phosphoribosyl c-AMP cyclohydrolase compare
Atu0723 -4.9 -3.4 FAD dependent oxidoreductase compare
Atu0043 -4.9 -4.7 imidazoleglycerol-phosphate dehydratase compare
Atu0039 -4.8 -3.3 imidazoleglycerol-phosphate synthase cyclase compare
Atu0099 -4.8 -13.5 prephenate dehydratase compare
Atu3706 -4.5 -13.0 D-3-phosphoglycerate dehydrogenase compare
Atu2289 -4.5 -17.5 anthranilate synthase component I and II compare
Atu1844 -4.5 -5.1 Phosphoribosylformylglycinamidine synthetase compare
Atu2650 -4.4 -14.8 glycerol-3-phosphate dehydrogenase compare
Atu3740 -4.3 -12.6 fructose bisphosphate aldolase compare
Atu0432 -4.3 -9.3 O-succinylhomoserine sulfhydrylase compare
Atu1620 -4.3 -16.3 triosephosphate isomerase compare
Atu1205 -4.2 -16.4 threonine dehydratase compare
Atu2790 -4.2 -4.1 3-isopropylmalate dehydratase, small subunit compare
Atu2709 -4.2 -20.7 3-isopropylmalate dehydratase, large subunit compare
Atu3469 -4.1 -4.8 phosphoglyceromutase compare
Atu2036 -4.1 -19.8 acetolactate synthase III, large subunit compare
Atu4505 -4.0 -11.5 LacI family transcriptional regulator compare
Atu0399 -4.0 -10.5 dihydroorotase compare
Atu3885 -4.0 -9.7 inositol monophosphatase compare
Atu1686 -3.9 -17.7 peptidyl-prolyl cis-trans isomerse D compare
Atu0038 -3.9 -6.7 phosphoribosyl-ATP pyrophosphohydrolase compare
Atu2747 -3.9 -14.4 hypothetical protein compare
Atu0647 -3.8 -11.2 phosphoribosylamine--glycine ligase compare
Atu1140 -3.7 -5.9 phosphoribosyalaminoimidazole-succinocarboxamide synthase compare
Atu3754 -3.7 -8.1 phosphoribosylaminoimidazole carboxylase catalytic subunit compare
Atu1030 -3.7 -2.1 GTP pyrophosphohydrolase/synthetase, RelA/SpoT family compare
Atu1308 -3.7 -8.2 aspartate carbamoyl transferase catalytic subunit compare
Atu0400 -3.6 -6.1 orotate phosphoribosyltransferase compare
Atu2718 -3.6 -10.3 homoserine O-succinyltransferase compare
Atu1588 -3.6 -13.7 homoserine dehydrogenase compare
Atu1850 -3.5 -5.0 phosphoribosylformylglycinamidine synthetase II compare
Atu0298 -3.4 -11.2 orotidine 5 compare
Atu3739 -3.4 -4.6 phosphoglycerate kinase compare
Atu2115 -3.4 -11.3 pyrophosphate--fructose-6-phosphate 1-phosphotransferase compare
Atu0486 -3.4 -8.1 dihydroorotate dehydrogenase compare
Atu1075 -3.4 -8.3 amidophosphoribosyltransferase compare
Atu1456 -3.3 -14.5 sulfite reductase (NADPH) hemoprotein beta-component compare
Atu3783 -3.3 -19.0 glutamate synthase subunit beta compare
Atu2015 -3.2 -14.4 aminotransferase compare
Atu0040 -3.1 -1.8 phosphoribosylformino-5-aminoimidazole carboxamide ribotide isomerase compare
Atu1307 -3.0 -7.1 dihydroorotase compare
Atu1141 -3.0 -9.6 Phosphoribosylglycinamide synthetase compare
Atu3784 -2.9 -21.2 glutamate synthase large subunit compare
Atu3755 -2.8 -8.2 phosphoribosylaminoimidazole carboxylase ATPase subunit compare
Atu1454 -2.8 -11.5 siroheme synthase compare
Atu0332 -2.6 -14.8 RNA polymerase sigma-54 factor compare
Atu1845 -2.6 -7.2 phosphoribosylformylglycinamidine synthase I compare
Atu3482 -2.3 -11.2 pantoate--beta-alanine ligase compare
Atu3296 -2.3 -10.0 two component response regulator for C4-dicarboxylate transport compare
Atu3730 -2.3 -2.9 hypothetical protein compare
Atu2640 -2.2 -6.8 hypothetical protein compare
Atu2548 -2.2 -15.5 phosphoribosylaminoimidazole-succinocarboxamide synthase compare
Atu1446 -2.1 -2.9 two component response regulator compare
Atu1455 -2.1 -4.2 hypothetical protein compare
Atu1685 -2.1 -1.9 hypothetical protein compare
Atu3297 -2.1 -11.1 two component sensor kinase for C4-dicarboxylate transport compare
Atu1589 -2.1 -7.0 aminotransferase, class I compare
Atu3483 -2.0 -5.2 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
Atu3298 -2.0 -11.7 C4-dicarboxylate transporter DctA compare
Atu1462 -1.7 -10.2 glycine cleavage system protein P2 compare
Atu0422 -1.7 -3.4 ABC transporter, membrane spanning protein compare
Atu4096 -1.7 -7.6 nicotinate-nucleotide pyrophosphorylase compare
Atu0141 -1.7 -2.0 cytochrome O ubiquinol oxidase subunit I compare
Atu4098 -1.6 -10.9 quinolinate synthetase compare
Atu3731 -1.6 -7.6 5-formyltetrahydrofolate cyclo-ligase compare
Atu1464 -1.6 -7.1 glycine cleavage system T protein, aminomethyltransferase compare
Atu0031 -1.6 -2.1 PTS system, IIA component compare
Atu0346 -1.5 -3.1 uridylyltransferase/uridylyl-removing enzyme UTase compare
Atu0421 -1.5 -2.1 ABC transporter, membrane spanning protein compare
Atu4097 -1.5 -8.6 L-aspartate oxidase compare
Atu0029 -1.5 -5.9 S-adenosylhomocysteine hydrolase compare
Atu2017 -1.5 -1.3 hypothetical protein compare
Atu1163 -1.5 -3.0 exopolysaccharide II synthesis transcriptional activator ExpG compare
Atu8115 -1.4 -4.0 Hypothetical Protein compare
Atu2155 -1.4 -11.9 methionine synthase compare
Atu1463 -1.4 -8.2 glycine cleavage system component H compare
Atu4317 -1.4 -3.7 TetR family transcriptional regulator compare
Atu1748 -1.4 -9.3 NIFU-like protein compare
Atu1457 -1.3 -2.0 hypothetical protein compare
Atu3468 -1.3 -1.3 hypothetical protein compare
Atu0971 -1.2 -4.6 two component sensor kinase compare
Atu0641 -1.2 -3.9 hypothetical protein compare
Atu3763 -1.2 -1.5 hypothetical protein compare
Atu1445 -1.2 -3.9 two component sensor kinase compare
Atu5164 -1.2 -0.7 type IV secretion protein AvhB3 compare
Atu2020 -1.0 -4.6 transcriptional regulator, TetR family compare
Atu2728 -1.0 -4.6 beta (1-->2) glucan export ATP-binding protein compare
Atu2800 -1.0 -1.8 precorrin-3B C17-methyltransferase compare
Atu4217 -0.9 -2.2 TetR family transcriptional regulator compare
Atu2205 -0.9 -3.8 transcriptional regulator, MarR family compare
Atu2083 -0.9 -2.2 DNA repair protein RecN compare
Atu2376 -0.9 -0.7 hypothetical protein compare
Atu1810 -0.9 -1.3 hypothetical protein compare
Atu6009 -0.9 -1.7 indole-3-lactate synthase compare
Atu2209 -0.8 -2.4 pyrroline-5-carboxylate reductase compare
Atu0876 -0.8 -1.7 superoxide dismutase compare
Atu5026 -0.8 -2.3 hypothetical protein compare
Atu0190 -0.8 -4.6 ABC transporter, nucleotide binding/ATPase protein (peptide) compare
Atu8034 -0.8 -2.2 hypothetical protein compare
Atu3008 -0.8 -0.9 hypothetical protein compare
Atu4890 -0.8 -1.6 IS426 transposase compare
Atu1182 -0.8 -1.7 hypothetical protein compare
Atu5157 -0.8 -1.6 hypothetical protein compare
Atu5493 -0.8 -1.6 hypothetical protein compare
Atu5115 -0.8 -0.8 hypothetical protein compare
Atu1439 -0.8 -2.2 hypothetical protein compare
Atu3496 -0.7 -3.2 hypothetical protein compare
Atu3999 -0.7 -1.7 dithiobiotin synthetase compare
Atu5186 -0.7 -1.1 hypothetical protein compare
Atu3290 -0.7 -4.5 phosphomethylpyrimidine kinase compare
Atu1774 -0.7 -5.2 ABC transporter, substrate binding protein (peptide) compare
Atu5145 -0.7 -1.4 acetyltransferase compare
Atu0769 -0.7 -1.0 protoheme IX farnesyltransferase compare
Atu1573 -0.7 -1.4 hypothetical protein compare
Atu6114 -0.7 -0.9 hypothetical protein compare
Atu0690 -0.7 -2.5 hypothetical protein compare
Atu4882 -0.7 -1.3 hypothetical protein compare
Atu0107 -0.7 -1.3 hypothetical protein compare
Atu5142 -0.7 -0.9 hypothetical protein compare
Atu0501 -0.7 -5.2 acyl-CoA dehydrogenase compare
Atu2344 -0.7 -1.7 lactoylglutathione lyase compare
Atu5112 -0.6 -1.6 hypothetical protein compare
Atu5502 -0.6 -1.7 hypothetical protein compare
Atu1149 -0.6 -1.3 adenylate cyclase compare
Atu0331 -0.6 -2.0 sigma-54 modulation protein compare
Atu0225 -0.6 -0.8 hypothetical protein compare
Atu3400 -0.6 -2.5 hypothetical protein compare
Atu0188 -0.6 -2.1 ABC transporter, membrane spanning protein (peptide) compare
Atu0142 -0.6 -1.7 cytochrome o ubiquinol oxidase subunit II compare
Atu8052 -0.6 -0.7 hypothetical protein compare
Atu6112 -0.6 -1.4 conserved hypothetical protein compare
Atu2192 -0.6 -1.1 hypothetical protein compare
Atu4290 -0.6 -1.8 hypothetical protein compare
Atu0819 -0.6 -2.5 hypothetical protein compare
Atu4000 -0.6 -4.8 adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
Atu1359 -0.6 -0.8 dnaK deletion suppressor protein compare
Atu4773 -0.6 -1.3 two component response regulator compare
Atu1028 -0.6 -1.5 hypothetical protein compare
Atu5437 -0.6 -1.3 hypothetical protein compare
Atu3486 -0.6 -2.2 DeoR family transcriptional regulator compare
Atu3997 -0.6 -4.8 biotin synthetase compare
Atu3031 -0.6 -1.0 hypothetical protein compare
Atu0544 -0.6 -1.9 hypothetical protein compare
Atu1952 -0.6 -1.2 hypothetical protein compare
Atu2807 -0.6 -2.8 cob(I)alamin adenosyltransferase compare
Atu3506 -0.6 -2.4 hypothetical protein compare
Atu4161 -0.6 -1.4 hypothetical protein compare
Atu5166 -0.6 -1.5 type IV secretion protein AvhB5 compare
Atu0538 -0.6 -1.8 hypothetical protein compare
Atu3495 -0.5 -3.7 diguanylate cyclase compare
Atu0953 -0.5 -0.4 hypothetical protein compare
Atu0894 -0.5 -1.3 ABC transporter, membrane spanning protein compare
Atu0149 -0.5 -1.7 enoyl-(acyl-carrier-protein) reductase compare
Atu6108 -0.5 -1.9 alkylphosphonate uptake protein compare
Atu2201 -0.5 -1.8 hydrolase compare
Atu2715 -0.5 -2.7 hypothetical protein compare
Atu5163 -0.5 -0.6 type IV secretion protein AvhB2 compare
Atu2808 -0.5 -3.8 cobyric acid synthase compare
Atu6081 -0.5 -1.9 conserved hypothetical protein compare
Atu3327 -0.5 -1.8 succinoglycan exopolysaccharide synthesis protein compare
Atu1751 -0.5 -4.2 hypothetical protein compare
Atu2127 -0.5 -3.0 L-carnitine dehydratase compare
Atu1629 -0.5 -0.9 transcriptional regulator, ArsR family compare
Atu3121 -0.5 -0.7 cold shock protein compare
Atu4053 -0.5 -1.1 succinoglycan biosynthesis protein compare
Atu4792 -0.5 -0.9 hypothetical protein compare
Atu1026 -0.5 -1.7 hypothetical protein compare
Atu3485 -0.5 -3.8 short chain dehydrogenase compare
Atu2123 -0.5 -2.4 methylenetetrahydrofolate reductase compare
Atu0566 -0.5 -1.2 hypothetical protein compare
Atu5494 -0.5 -1.6 hypothetical protein compare
Atu1714 -0.5 -1.1 exonuclease III compare
Atu4406 -0.5 -1.3 periplasmic nitrate reductase, ferredoxin-like protein compare
Atu1219 -0.5 -0.5 hypothetical protein compare
Atu1021 -0.5 -1.0 outer membrane protein compare
Atu6072 -0.5 -1.8 thermophilic desulfurizing enzyme compare
Atu0170 -0.5 -2.5 hypothetical protein compare
Atu0026 -0.5 -0.7 hypothetical protein compare
Atu4838 -0.5 -2.5 outer membrane lipoprotein compare
Atu2125 -0.5 -1.1 ABC transporter, nucleotide binding/ATPase protein compare
Atu1846 -0.5 -1.0 hypothetical protein compare
Atu3727 -0.5 -1.8 hypothetical protein compare
Atu3467 -0.5 -1.9 hypothetical protein compare
Atu5114 -0.5 -1.3 hypothetical protein compare
Atu1076 -0.5 -1.6 colicin V production protein compare
Atu3492 -0.5 -2.1 sugar kinase compare
Atu0291 -0.5 -2.6 hypothetical protein compare


Specific Phenotypes

For 3 genes in this experiment

For nitrogen source Ammonium chloride in Agrobacterium fabrum C58

For nitrogen source Ammonium chloride across organisms