Experiment set3IT002 for Pseudomonas simiae WCS417

Compare to:

L-Asparagine carbon source

200 most important genes:

  gene name fitness t score description  
PS417_16465 -6.4 -8.8 sirohydrochlorin ferrochelatase compare
PS417_23800 -6.4 -7.6 ketol-acid reductoisomerase compare
PS417_02510 -6.3 -9.5 ATP phosphoribosyltransferase regulatory subunit compare
PS417_01575 -6.2 -6.8 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PS417_04415 -5.9 -9.9 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PS417_27040 -5.9 -3.4 3-phosphoglycerate dehydrogenase compare
PS417_01855 -5.9 -5.4 phosphoribosyl-AMP cyclohydrolase compare
PS417_25725 -5.8 -16.3 anthranilate synthase component I compare
PS417_23545 -5.7 -3.9 gamma-glutamyl kinase compare
PS417_18560 -5.5 -8.5 N-(5'-phosphoribosyl)anthranilate isomerase compare
PS417_18595 -5.5 -6.3 3-isopropylmalate dehydratase compare
PS417_26740 -5.3 -6.9 homoserine acetyltransferase compare
PS417_18585 -5.3 -7.2 3-isopropylmalate dehydrogenase compare
PS417_24745 -5.3 -5.1 gamma-glutamyl phosphate reductase compare
PS417_01850 -5.2 -10.0 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PS417_23810 -5.1 -12.3 acetolactate synthase 3 catalytic subunit compare
PS417_23805 -5.0 -6.8 acetolactate synthase 3 regulatory subunit compare
PS417_27795 -4.9 -2.0 orotate phosphoribosyltransferase compare
PS417_04420 -4.9 -12.6 histidinol dehydrogenase compare
PS417_26745 -4.7 -6.6 methionine biosynthesis protein MetW compare
PS417_00185 -4.4 -6.0 tryptophan synthase subunit beta compare
PS417_01605 -4.4 -3.0 phosphoglycerate mutase compare
PS417_01560 -4.4 -4.3 imidazoleglycerol-phosphate dehydratase compare
PS417_18600 -4.4 -4.2 isopropylmalate isomerase compare
PS417_26995 -4.2 -11.5 phosphoserine phosphatase compare
PS417_05595 -4.2 -7.5 ornithine carbamoyltransferase compare
PS417_12855 -4.1 -6.2 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_18530 -4.1 -5.1 O-succinylhomoserine sulfhydrylase compare
PS417_20125 -4.1 -4.7 phosphoribosylglycinamide formyltransferase compare
PS417_27195 -4.1 -2.2 N-acetylglutamate synthase compare
PS417_25710 -4.0 -2.3 indole-3-glycerol-phosphate synthase compare
PS417_27835 -4.0 -8.3 endoribonuclease compare
PS417_01580 -3.9 -2.0 imidazole glycerol phosphate synthase compare
PS417_24155 -3.8 -4.5 ATP-binding protein compare
PS417_02415 -3.6 -6.7 phosphoserine phosphatase compare
PS417_12290 -3.5 -8.2 sulfite reductase compare
PS417_26730 -3.5 -2.0 pyrroline-5-carboxylate reductase compare
PS417_25715 -3.4 -5.4 anthranilate phosphoribosyltransferase compare
PS417_00180 -3.4 -3.9 tryptophan synthase subunit alpha compare
PS417_26890 -3.0 -4.8 dihydroxy-acid dehydratase compare
PS417_08125 -3.0 -2.1 prephenate dehydratase compare
PS417_20160 -2.9 -5.2 cysteine synthase compare
PS417_23110 -2.8 -6.2 2-isopropylmalate synthase compare
PS417_25720 -2.8 -3.9 anthranilate synthase component II compare
PS417_01565 -2.5 -2.4 imidazole glycerol phosphate synthase compare
PS417_23995 -2.5 -1.7 preprotein translocase subunit SecG compare
PS417_20985 -2.3 -4.3 porin compare
PS417_23770 -2.2 -3.4 exodeoxyribonuclease V subunit alpha compare
PS417_06375 -2.1 -1.6 deoxycytidine triphosphate deaminase compare
PS417_26725 -2.0 -4.7 hypothetical protein compare
PS417_24370 -2.0 -1.3 (2Fe-2S)-binding protein compare
PS417_24835 -1.9 -7.1 hypothetical protein compare
PS417_23775 -1.9 -2.5 exodeoxyribonuclease V subunit beta compare
PS417_08540 -1.7 -3.9 RNA helicase compare
PS417_22210 -1.7 -2.4 AraC family transcriptional regulator compare
PS417_05455 -1.7 -5.7 XRE family transcriptional regulator compare
PS417_21480 -1.6 -2.4 23S rRNA pseudouridylate synthase compare
PS417_23915 -1.5 -5.3 pantoate--beta-alanine ligase compare
PS417_08245 -1.5 -1.4 CDP-6-deoxy-L-threo-D-glycero-4-hexulose-3- dehydrase reductase compare
PS417_12730 -1.5 -2.0 glycosyltransferase compare
PS417_08155 -1.5 -3.1 integration host factor subunit beta compare
PS417_07640 -1.5 -2.9 glyceraldehyde-3-phosphate dehydrogenase compare
PS417_18070 -1.3 -1.3 general secretion pathway protein GspH compare
PS417_05535 -1.3 -2.0 Fis family transcriptional regulator compare
PS417_18590 -1.3 -2.4 SAM-dependent methyltransferase compare
PS417_07170 -1.2 -3.4 hypothetical protein compare
PS417_23360 -1.2 -1.2 hypothetical protein compare
PS417_02555 -1.2 -9.2 exoribonuclease R compare
PS417_16195 -1.2 -1.2 AraC family transcriptional regulator compare
PS417_22520 -1.2 -1.9 histidine kinase compare
PS417_08230 -1.2 -2.3 lipopolysaccharide biosynthesis protein RfbH compare
PS417_03560 -1.1 -2.6 GTP-binding protein compare
PS417_06685 -1.1 -1.2 beta-ketoadipyl CoA thiolase compare
PS417_17980 -1.1 -1.9 ABC transporter permease compare
PS417_16555 -1.0 -1.7 cupin compare
PS417_26695 -1.0 -1.3 uracil phosphoribosyltransferase compare
PS417_23385 -1.0 -5.0 cytochrome o ubiquinol oxidase subunit I compare
PS417_14305 -1.0 -3.1 hydroxyproline-2-epimerase compare
PS417_12820 -1.0 -2.3 hypothetical protein compare
PS417_02560 -1.0 -1.6 23S rRNA methyltransferase compare
PS417_19425 -1.0 -0.9 allantoicase compare
PS417_19955 -0.9 -1.9 hypothetical protein compare
PS417_14070 -0.9 -1.1 hypothetical protein compare
PS417_08195 -0.9 -4.0 hypothetical protein compare
PS417_22570 -0.9 -1.1 H-NS histone compare
PS417_19600 -0.9 -1.2 exonuclease compare
PS417_17565 -0.9 -3.0 branched-chain amino acid aminotransferase compare
PS417_14855 -0.9 -3.0 gluconolactonase compare
PS417_28515 -0.9 -1.9 16S rRNA methyltransferase compare
PS417_23625 -0.9 -2.0 LysR family transcriptional regulator compare
PS417_19590 -0.9 -1.7 enoyl-CoA hydratase compare
PS417_02695 -0.8 -1.6 protein hupE compare
PS417_21015 -0.8 -1.4 EstX protein compare
PS417_05905 -0.8 -1.7 hypothetical protein compare
PS417_01095 -0.8 -1.1 amino acid ABC transporter ATP-binding protein compare
PS417_10425 -0.8 -1.5 hypothetical protein compare
PS417_28225 -0.8 -1.4 hypothetical protein compare
PS417_21990 -0.8 -2.2 LacI family transcriptional regulator compare
PS417_21125 -0.8 -3.4 phosphoadenosine phosphosulfate reductase compare
PS417_12595 -0.8 -1.7 transcriptional regulator compare
PS417_28220 -0.8 -1.4 LysR family transcriptional regulator compare
PS417_05815 -0.8 -2.5 recombinase RecA compare
PS417_23370 -0.8 -3.6 protoheme IX farnesyltransferase compare
PS417_16920 -0.8 -2.6 multidrug RND transporter compare
PS417_09235 -0.8 -0.9 molecular chaperone compare
PS417_03260 -0.8 -1.9 5S ribosomal RNA compare
PS417_00065 -0.8 -1.4 3-methyladenine DNA glycosylase compare
PS417_27585 -0.7 -1.5 diaminopimelate epimerase compare
PS417_05065 -0.7 -1.7 hypothetical protein compare
PS417_23390 -0.7 -2.9 ubiquinol oxidase subunit II compare
PS417_03300 -0.7 -2.2 alanine acetyltransferase compare
PS417_03080 -0.7 -1.0 hypothetical protein compare
PS417_08200 -0.7 -2.4 hypothetical protein compare
PS417_27010 -0.7 -4.3 threonine dehydratase compare
PS417_21630 -0.7 -1.5 magnesium transporter compare
PS417_16495 -0.7 -1.9 leucyl/phenylalanyl-tRNA--protein transferase compare
PS417_19350 -0.7 -2.0 GTP cyclohydrolase compare
PS417_12345 -0.7 -1.5 cobalamin biosynthesis protein CobW compare
PS417_05545 -0.7 -3.8 amino acid ABC transporter ATP-binding protein compare
PS417_13870 -0.7 -1.4 hypothetical protein compare
PS417_27870 -0.7 -1.6 ATP-dependent DNA helicase RecG compare
PS417_04365 -0.7 -0.9 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase compare
PS417_27875 -0.7 -3.3 histidine kinase compare
PS417_25905 -0.7 -2.1 AsnC family transcriptional regulator compare
PS417_26280 -0.7 -2.7 NADPH:quinone reductase compare
PS417_28200 -0.7 -2.2 hypothetical protein compare
PS417_02075 -0.7 -2.7 thioesterase compare
PS417_24615 -0.7 -1.1 hypothetical protein compare
PS417_10675 -0.7 -0.8 TetR family transcriptional regulator compare
PS417_22445 -0.7 -2.0 ATP-dependent DNA helicase RuvB compare
PS417_16980 -0.7 -2.5 exonuclease III compare
PS417_21120 -0.7 -2.0 phosphoserine phosphatase compare
PS417_21705 -0.7 -3.1 arginine N-succinyltransferase compare
PS417_15915 -0.7 -1.1 hypothetical protein compare
PS417_20620 -0.7 -2.6 glycosyl transferase family 2 compare
PS417_02425 -0.6 -3.1 thiosulfate sulfurtransferase compare
PS417_28190 -0.6 -2.2 amino acid ABC transporter substrate-binding protein compare
PS417_06045 -0.6 -1.2 membrane protein compare
PS417_24575 -0.6 -1.0 hypothetical protein compare
PS417_00195 -0.6 -1.7 hypothetical protein compare
PS417_07540 -0.6 -2.2 multifunctional fatty acid oxidation complex subunit alpha compare
PS417_06195 -0.6 -2.8 succinyldiaminopimelate aminotransferase compare
PS417_03045 -0.6 -1.5 hypothetical protein compare
PS417_13895 -0.6 -2.2 chemotaxis protein CheB compare
PS417_10880 -0.6 -3.2 cytochrome c component of deoxyribose dehydrogenase (from data) compare
PS417_22795 -0.6 -1.6 exclusion suppressor FxsA compare
PS417_00385 -0.6 -0.8 Fur family transcriptional regulator compare
PS417_02895 -0.6 -1.3 precorrin-6Y C5,15-methyltransferase compare
PS417_22935 -0.6 -1.7 hypothetical protein compare
PS417_23375 -0.6 -1.5 cytochrome C oxidase compare
PS417_27135 -0.6 -0.7 glutamine synthetase compare
PS417_20025 -0.6 -0.9 alpha-ribazole phosphatase compare
PS417_20060 -0.6 -3.9 cobyrinic acid a,c-diamide synthase compare
PS417_20840 -0.6 -4.3 hypothetical protein compare
PS417_26420 -0.6 -1.0 hypothetical protein compare
PS417_08320 -0.6 -1.3 metal-chelation protein CHAD compare
PS417_15650 -0.6 -1.1 glutamine amidotransferase compare
PS417_00375 -0.6 -1.4 membrane protein compare
PS417_15135 -0.6 -0.7 hypothetical protein compare
PS417_04180 -0.6 -1.4 GntR family transcriptional regulator compare
PS417_18490 -0.6 -1.5 hypothetical protein compare
PS417_11705 -0.6 -3.4 cyclic peptide transporter compare
PS417_23380 -0.6 -1.5 cytochrome o ubiquinol oxidase subunit III compare
PS417_20915 -0.6 -2.2 hypothetical protein compare
PS417_01285 -0.6 -0.9 haloacid dehalogenase compare
PS417_12455 -0.6 -1.6 hydrolase compare
PS417_19190 -0.6 -2.2 BolA family transcriptional regulator compare
PS417_08205 -0.6 -1.6 acetyltransferase compare
PS417_04425 -0.6 -3.2 histidinol-phosphate aminotransferase compare
PS417_09150 -0.6 -1.2 energy transducer TonB compare
PS417_22060 -0.6 -1.1 hypothetical protein compare
PS417_26230 -0.6 -1.7 electron transfer flavoprotein subunit alpha compare
PS417_14590 -0.6 -1.1 LysR family transcriptional regulator compare
PS417_26005 -0.6 -3.8 biotin synthase compare
PS417_14085 -0.6 -1.9 hypothetical protein compare
PS417_09210 -0.6 -0.7 TetR family transcriptional regulator compare
PS417_02225 -0.6 -1.4 bifunctional glutamine-synthetase adenylyltransferase/deadenyltransferase compare
PS417_24265 -0.6 -2.7 ABC transporter ATP-binding protein compare
PS417_08930 -0.6 -2.2 hypothetical protein compare
PS417_08380 -0.6 -3.5 ABC transporter ATP-binding protein compare
PS417_08135 -0.6 -2.8 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_05025 -0.6 -1.3 maleylacetoacetate isomerase compare
PS417_10040 -0.6 -0.6 MFS transporter compare
PS417_13850 -0.6 -1.6 2-methylbutanoyl-CoA dehydrogenase (EC 1.3.8.5) (from data) compare
PS417_26120 -0.6 -1.0 hypothetical protein compare
PS417_23825 -0.6 -3.2 penicillin-binding protein compare
PS417_19675 -0.6 -2.4 chemotaxis protein CheY compare
PS417_01965 -0.5 -1.0 fimbriae biosynthesis protein compare
PS417_17410 -0.5 -1.8 membrane protein compare
PS417_27045 -0.5 -1.7 ATPase compare
PS417_10865 -0.5 -1.4 GNAT family acetyltransferase compare
PS417_01360 -0.5 -1.1 4-oxalocrotonate tautomerase compare
PS417_24580 -0.5 -2.9 pseudouridine synthase compare
PS417_19505 -0.5 -1.4 2,4-diaminobutyrate 4-aminotransferase compare
PS417_27435 -0.5 -3.1 polyphosphate kinase compare
PS417_24500 -0.5 -2.4 DEAD/DEAH box helicase compare
PS417_16320 -0.5 -1.2 protein tyrosine phosphatase compare
PS417_06645 -0.5 -3.7 RNA polymerase-associated protein RapA compare
PS417_26295 -0.5 -1.7 gamma-butyrobetaine dioxygenase compare
PS417_16715 -0.5 -1.0 DoxX family protein compare


Specific Phenotypes

None in this experiment

For Pseudomonas simiae WCS417 in carbon source experiments

For carbon source L-Asparagine across organisms