Experiment set3IT001 for Pseudomonas simiae WCS417

Compare to:

L-Histidine carbon source

200 most important genes:

  gene name fitness t score description  
PS417_27040 -5.8 -3.3 3-phosphoglycerate dehydrogenase compare
PS417_08125 -4.9 -2.0 prephenate dehydratase compare
PS417_27795 -4.8 -2.0 orotate phosphoribosyltransferase compare
PS417_01705 -4.8 -9.8 Formiminoglutamic iminohydrolase (EC 3.5.3.13) (from data) conserved
PS417_24745 -4.7 -5.6 gamma-glutamyl phosphate reductase compare
PS417_18595 -4.6 -5.9 3-isopropylmalate dehydratase compare
PS417_20985 -4.6 -4.5 porin compare
PS417_00185 -4.5 -4.4 tryptophan synthase subunit beta compare
PS417_26745 -4.4 -8.8 methionine biosynthesis protein MetW compare
PS417_25725 -4.3 -17.7 anthranilate synthase component I compare
PS417_01605 -4.2 -2.9 phosphoglycerate mutase compare
PS417_07640 -4.2 -3.1 glyceraldehyde-3-phosphate dehydrogenase compare
PS417_18600 -4.2 -3.4 isopropylmalate isomerase compare
PS417_18560 -4.1 -11.7 N-(5'-phosphoribosyl)anthranilate isomerase compare
PS417_01750 -4.0 -4.7 histidine ammonia-lyase compare
PS417_27195 -4.0 -2.2 N-acetylglutamate synthase compare
PS417_23545 -4.0 -5.4 gamma-glutamyl kinase compare
PS417_02415 -3.9 -7.5 phosphoserine phosphatase compare
PS417_26740 -3.9 -8.7 homoserine acetyltransferase compare
PS417_05595 -3.8 -8.6 ornithine carbamoyltransferase compare
PS417_26730 -3.4 -2.0 pyrroline-5-carboxylate reductase compare
PS417_18585 -3.4 -6.3 3-isopropylmalate dehydrogenase compare
PS417_18530 -3.4 -6.8 O-succinylhomoserine sulfhydrylase compare
PS417_25720 -3.3 -7.6 anthranilate synthase component II compare
PS417_20160 -3.2 -4.1 cysteine synthase compare
PS417_01760 -3.1 -4.7 imidazolonepropionase compare
PS417_23805 -3.1 -5.1 acetolactate synthase 3 regulatory subunit compare
PS417_01720 -3.1 -8.2 Urocanate hydratase (EC 4.2.1.49) (from data) conserved
PS417_25715 -3.1 -6.4 anthranilate phosphoribosyltransferase compare
PS417_00180 -3.0 -3.3 tryptophan synthase subunit alpha compare
PS417_26040 -3.0 -4.2 malate synthase compare
PS417_23800 -3.0 -10.7 ketol-acid reductoisomerase compare
PS417_24155 -3.0 -4.0 ATP-binding protein compare
PS417_16465 -2.9 -8.5 sirohydrochlorin ferrochelatase compare
PS417_06375 -2.9 -1.7 deoxycytidine triphosphate deaminase compare
PS417_23810 -2.9 -13.2 acetolactate synthase 3 catalytic subunit compare
PS417_23110 -2.8 -13.3 2-isopropylmalate synthase compare
PS417_25710 -2.8 -1.9 indole-3-glycerol-phosphate synthase compare
PS417_12290 -2.7 -7.6 sulfite reductase compare
PS417_26890 -2.6 -6.0 dihydroxy-acid dehydratase compare
PS417_23770 -2.6 -3.9 exodeoxyribonuclease V subunit alpha compare
PS417_12855 -2.4 -5.0 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_27835 -2.4 -7.2 endoribonuclease compare
PS417_08245 -2.2 -1.6 CDP-6-deoxy-L-threo-D-glycero-4-hexulose-3- dehydrase reductase compare
PS417_12310 -2.2 -9.7 methionine synthase compare
PS417_12730 -2.2 -2.1 glycosyltransferase compare
PS417_27870 -2.1 -3.7 ATP-dependent DNA helicase RecG compare
PS417_22565 -2.1 -1.9 formyltetrahydrofolate deformylase compare
PS417_16570 -2.0 -8.8 isocitrate lyase compare
PS417_06685 -1.9 -1.6 beta-ketoadipyl CoA thiolase compare
PS417_22570 -1.9 -1.5 H-NS histone compare
PS417_22445 -1.9 -4.5 ATP-dependent DNA helicase RuvB compare
PS417_21750 -1.9 -12.5 acetyl-CoA synthetase compare
PS417_27305 -1.7 -8.4 5-formyltetrahydrofolate cyclo-ligase compare
PS417_23775 -1.7 -2.6 exodeoxyribonuclease V subunit beta compare
PS417_22450 -1.5 -1.6 ATP-dependent DNA helicase RuvA compare
PS417_00190 -1.5 -4.6 LysR family transcriptional regulator conserved
PS417_21480 -1.5 -1.6 23S rRNA pseudouridylate synthase compare
PS417_27435 -1.5 -4.9 polyphosphate kinase compare
PS417_09210 -1.5 -2.2 TetR family transcriptional regulator compare
PS417_03925 -1.4 -5.1 nicotinate-nucleotide pyrophosphorylase compare
PS417_27135 -1.4 -1.3 glutamine synthetase compare
PS417_27010 -1.4 -8.5 threonine dehydratase compare
PS417_21000 -1.4 -2.4 CrfX protein compare
PS417_05165 -1.4 -2.6 cytosol aminopeptidase compare
PS417_24765 -1.3 -3.3 membrane protein compare
PS417_26900 -1.3 -1.9 L-cystine transporter tcyP compare
PS417_05815 -1.3 -4.7 recombinase RecA compare
PS417_21705 -1.3 -4.1 arginine N-succinyltransferase compare
PS417_02555 -1.2 -9.2 exoribonuclease R compare
PS417_26510 -1.2 -6.1 5,10-methylenetetrahydrofolate reductase compare
PS417_05975 -1.2 -0.8 chemotaxis protein CheW compare
PS417_08205 -1.2 -3.5 acetyltransferase compare
PS417_08195 -1.2 -6.5 hypothetical protein compare
PS417_08200 -1.2 -2.4 hypothetical protein compare
PS417_14305 -1.2 -3.5 hydroxyproline-2-epimerase compare
PS417_14140 -1.2 -1.8 membrane protein compare
PS417_14755 -1.1 -1.3 UV damage repair endonuclease UvdE compare
PS417_24835 -1.1 -2.6 hypothetical protein compare
PS417_24370 -1.1 -0.9 (2Fe-2S)-binding protein compare
PS417_01435 -1.1 -1.3 hypothetical protein compare
PS417_28185 -1.1 -2.9 homocysteine methyltransferase compare
PS417_23690 -1.1 -3.9 Anthranilate 1,2-dioxygenase (deaminating, decarboxylating) (EC 1.14.12.1) (from data) compare
PS417_01725 -1.1 -2.3 sulfonate ABC transporter substrate-binding protein compare
PS417_15875 -1.1 -1.8 LuxR family transcriptional regulator compare
PS417_28515 -1.0 -3.0 16S rRNA methyltransferase compare
PS417_04875 -1.0 -1.5 molybdenum cofactor biosynthesis protein MoaE compare
PS417_12820 -1.0 -2.2 hypothetical protein compare
PS417_05550 -1.0 -2.3 amino acid ABC transporter permease compare
PS417_13510 -1.0 -1.2 polyketide cyclase compare
PS417_21380 -1.0 -3.0 GntR family transcriptional regulator compare
PS417_18495 -1.0 -2.5 hypothetical protein compare
PS417_07170 -1.0 -2.4 hypothetical protein compare
PS417_22840 -1.0 -1.4 tRNA-Met compare
PS417_08430 -1.0 -3.8 phospho-2-dehydro-3-deoxyheptonate aldolase compare
PS417_22270 -1.0 -3.5 hypothetical protein compare
PS417_03145 -1.0 -2.3 acetyl-CoA acetyltransferase compare
PS417_23170 -0.9 -1.3 FeS assembly protein IscX compare
PS417_22795 -0.9 -1.6 exclusion suppressor FxsA compare
PS417_05560 -0.9 -1.8 ABC transporter compare
PS417_07875 -0.9 -1.0 hypothetical protein compare
PS417_21510 -0.9 -1.4 histidine kinase compare
PS417_15125 -0.9 -1.9 glutathione S-transferase compare
PS417_00755 -0.9 -0.7 biofilm PGA synthesis protein PgaD compare
PS417_08730 -0.9 -1.6 cytochrome C compare
PS417_22385 -0.9 -5.4 quinolinate synthase A compare
PS417_14070 -0.9 -1.0 hypothetical protein compare
PS417_21700 -0.9 -2.8 arginine N-succinyltransferase compare
PS417_01875 -0.9 -1.9 polyhydroxyalkanoic acid system protein compare
PS417_01950 -0.9 -3.6 malate dehydrogenase compare
PS417_17480 -0.9 -3.5 branched-chain amino acid ABC transporter substrate-binding protein compare
PS417_16520 -0.9 -0.8 cold-shock protein compare
PS417_07440 -0.9 -1.5 cyclic nucleotide-binding protein compare
PS417_07770 -0.9 -1.7 hypothetical protein compare
PS417_01095 -0.9 -1.6 amino acid ABC transporter ATP-binding protein compare
PS417_09010 -0.9 -1.4 phosphohistidine phosphatase compare
PS417_22260 -0.9 -1.3 segregation and condensation protein B compare
PS417_24710 -0.9 -4.0 lipoprotein compare
PS417_26030 -0.9 -5.0 chloramphenical resistance permease RarD compare
PS417_01715 -0.9 -1.1 hypothetical protein compare
PS417_13755 -0.9 -1.4 oxidoreductase compare
PS417_05905 -0.9 -2.1 hypothetical protein compare
PS417_08685 -0.8 -1.5 flagellar hook-length control protein FliK compare
PS417_20140 -0.8 -1.7 nucleoprotein/polynucleotide-associated enzyme compare
PS417_05985 -0.8 -2.6 chemotaxis protein CheY compare
PS417_16815 -0.8 -1.6 acyl-CoA dehydrogenase compare
PS417_16255 -0.8 -2.2 RNA polymerase sigma factor compare
PS417_18590 -0.8 -1.9 SAM-dependent methyltransferase compare
PS417_13140 -0.8 -1.1 oxidoreductase compare
PS417_09605 -0.8 -1.9 glycosyl transferase compare
PS417_05535 -0.8 -1.3 Fis family transcriptional regulator compare
PS417_05065 -0.8 -2.0 hypothetical protein compare
PS417_23360 -0.8 -0.8 hypothetical protein compare
PS417_17305 -0.8 -1.2 hypothetical protein compare
PS417_21210 -0.8 -1.7 amidotransferase compare
PS417_10480 -0.8 -0.8 glutathione S-transferase compare
PS417_18690 -0.8 -1.7 aromatic amino acid aminotransferase compare
PS417_16490 -0.8 -1.4 cell division protein FtsK compare
PS417_06945 -0.8 -1.1 membrane protein compare
PS417_26725 -0.8 -2.9 hypothetical protein compare
PS417_01265 -0.8 -5.5 CbbBc protein compare
PS417_17495 -0.8 -4.1 multidrug ABC transporter permease compare
PS417_20610 -0.8 -0.9 hypothetical protein compare
PS417_15450 -0.8 -2.4 ABC transporter permease compare
PS417_03300 -0.8 -2.5 alanine acetyltransferase compare
PS417_12345 -0.8 -2.1 cobalamin biosynthesis protein CobW compare
PS417_07940 -0.8 -2.1 hypothetical protein compare
PS417_21800 -0.8 -2.4 MFS transporter compare
PS417_20665 -0.8 -3.9 hypothetical protein compare
PS417_18395 -0.7 -1.3 D-ribose ABC transporter, permease component RbsC (from data) compare
PS417_20080 -0.7 -1.5 peptidase P60 compare
PS417_20635 -0.7 -0.8 ABC transporter ATP-binding protein compare
PS417_11845 -0.7 -2.3 RpiR family transcriptional regulator compare
PS417_08230 -0.7 -0.8 lipopolysaccharide biosynthesis protein RfbH compare
PS417_21255 -0.7 -1.2 hypothetical protein compare
PS417_06600 -0.7 -0.7 leucine/isoleucine/valine transporter ATP-binding subunit compare
PS417_00570 -0.7 -3.8 NADP transhydrogenase subunit alpha compare
PS417_03430 -0.7 -3.1 methyltransferase type 11 compare
PS417_11310 -0.7 -2.7 alkaline phosphatase compare
PS417_04860 -0.7 -3.6 ATPase compare
PS417_24705 -0.7 -2.0 D-alanyl-D-alanine carboxypeptidase compare
PS417_08420 -0.7 -2.4 lipoprotein compare
PS417_15540 -0.7 -1.0 NUDIX hydrolase compare
PS417_19520 -0.7 -1.9 transcriptional regulator compare
PS417_05160 -0.7 -0.8 DNA polymerase III subunit chi compare
PS417_27035 -0.7 -1.9 FAD-linked oxidase compare
PS417_02805 -0.7 -1.4 urease subunit gamma compare
PS417_27595 -0.7 -1.8 recombinase XerC compare
PS417_27875 -0.7 -3.3 histidine kinase compare
PS417_17755 -0.7 -1.5 hypothetical protein compare
PS417_01270 -0.7 -1.2 iron ABC transporter substrate-binding protein compare
PS417_23950 -0.7 -1.6 polynucleotide phosphorylase/polyadenylase compare
PS417_24805 -0.7 -3.9 Fis family transcriptional regulator compare
PS417_04220 -0.7 -1.0 4-carboxymuconolactone decarboxylase compare
PS417_21395 -0.7 -4.1 radical SAM protein compare
PS417_10600 -0.7 -1.3 hypothetical protein compare
PS417_11510 -0.7 -1.1 AraC family transcriptional regulator compare
PS417_24585 -0.7 -4.3 AMP nucleosidase compare
PS417_04865 -0.7 -2.7 molybdenum cofactor biosynthesis protein MoaC compare
PS417_01275 -0.7 -2.6 LysR family transcriptional regulator compare
PS417_28070 -0.7 -3.6 phosphate ABC transporter ATP-binding protein compare
PS417_07945 -0.7 -2.0 hypothetical protein compare
PS417_00195 -0.7 -1.2 hypothetical protein compare
PS417_01995 -0.7 -1.7 hypothetical protein compare
PS417_07560 -0.6 -0.9 universal stress protein UspA compare
PS417_10220 -0.6 -2.2 hypothetical protein compare
PS417_24400 -0.6 -2.6 peptidase compare
PS417_08135 -0.6 -2.2 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_15355 -0.6 -3.1 sigma factor sigB regulation protein rsbQ compare
PS417_02425 -0.6 -2.5 thiosulfate sulfurtransferase compare
PS417_11480 -0.6 -2.0 hypothetical protein compare
PS417_12325 -0.6 -2.1 precorrin-4 C11-methyltransferase compare
PS417_08545 -0.6 -1.4 aromatic ring-opening dioxygenase LigB compare
PS417_15370 -0.6 -1.5 kinase compare
PS417_25920 -0.6 -3.3 pyrroloquinoline quinone biosynthesis protein PqqF compare
PS417_08540 -0.6 -1.7 RNA helicase compare
PS417_23475 -0.6 -1.0 hypothetical protein compare
PS417_21120 -0.6 -2.1 phosphoserine phosphatase compare
PS417_04180 -0.6 -1.5 GntR family transcriptional regulator compare
PS417_02510 -0.6 -3.0 ATP phosphoribosyltransferase regulatory subunit compare


Specific Phenotypes

For 2 genes in this experiment

For carbon source L-Histidine in Pseudomonas simiae WCS417

For carbon source L-Histidine across organisms