Experiment set39IT065 for Pseudomonas putida KT2440

Compare to:

D-Glucose carbon source pH 7.5

200 most important genes:

  gene name fitness t score description  
PP_4723 -8.6 -25.9 Carbamoyl-phosphate synthase large chain compare
PP_4724 -7.8 -15.1 Carbamoyl-phosphate synthase small chain compare
PP_0293 -7.4 -4.6 Imidazole glycerol phosphate synthase subunit HisF compare
PP_4999 -6.8 -4.7 dihydroorotase-like protein compare
PP_3511 -6.4 -7.6 Branched-chain-amino-acid aminotransferase compare
PP_0787 -6.3 -4.4 quinolinate phosphoribosyltransferase (decarboxylating) monomer compare
PP_1995 -6.2 -4.3 N-(5'-phosphoribosyl)anthranilate isomerase compare
PP_1988 -6.1 -4.2 3-isopropylmalate dehydrogenase compare
PP_5346 -6.1 -12.4 pyruvate carboxylase subunit B compare
PP_0967 -6.1 -7.2 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_1079 -6.0 -5.8 Ornithine carbamoyltransferase compare
PP_0422 -5.9 -5.8 Indole-3-glycerol phosphate synthase compare
PP_4678 -5.9 -5.8 Ketol-acid reductoisomerase compare
PP_5097 -5.9 -7.0 homoserine O-acetyltransferase compare
PP_1231 -5.8 -4.0 quinolinate synthase [4Fe-4S] cluster subunit compare
PP_5098 -5.7 -4.0 methionine biosynthesis protein MetW compare
PP_1088 -5.7 -9.6 Argininosuccinate synthase compare
PP_2327 -5.5 -8.5 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_0966 -5.4 -9.1 Histidinol dehydrogenase compare
PP_4700 -5.4 -3.7 pantothenate synthetase compare
PP_0417 -5.3 -16.2 Anthranilate synthase component 1 compare
PP_4680 -5.3 -8.1 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_1985 -5.3 -6.3 3-isopropylmalate dehydratase large subunit compare
PP_5289 -5.2 -3.6 Acetylglutamate kinase compare
PP_5185 -5.2 -3.6 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_0290 -5.2 -3.6 Imidazole glycerol phosphate synthase subunit HisH compare
PP_0965 -5.2 -12.5 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_5348 -5.1 -11.0 Transcriptional regulator, LysR family compare
PP_5015 -5.1 -6.1 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PP_4909 -5.1 -9.9 phosphoserine phosphatase compare
PP_0691 -5.1 -17.5 Glutamate 5-kinase compare
PP_2001 -5.1 -10.9 O-succinylhomoserine sulfhydrylase compare
PP_4679 -5.0 -3.4 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_1986 -4.9 -3.4 3-isopropylmalate dehydratase small subunit compare
PP_5303 -4.9 -4.7 aminoacrylate/iminopropionate hydrolase/deaminase compare
PP_5347 -4.7 -12.2 pyruvate carboxylase subunit A compare
PP_4890 -4.5 -5.4 ATP phosphoribosyltransferase regulatory subunit compare
PP_0184 -4.4 -3.1 Argininosuccinate lyase compare
PP_2371 -4.3 -5.9 Sulphite reductase hemoprotein, beta subunit compare
PP_0421 -4.3 -9.1 Anthranilate phosphoribosyltransferase compare
PP_0289 -4.3 -6.9 Imidazoleglycerol-phosphate dehydratase compare
PP_3999 -4.3 -6.5 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_0292 -4.2 -2.9 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_0082 -4.1 -2.9 tryptophan synthase alpha chain compare
PP_0083 -4.0 -2.8 tryptophan synthase beta chain compare
PP_0339 -3.8 -3.7 Pyruvate dehydrogenase E1 component compare
PP_4696 -3.8 -5.2 Nitrogen regulation protein NR(I) compare
PP_4364 -3.8 -5.5 putative Anti-sigma F factor antagonist compare
PP_1233 -3.8 -10.1 sulfurtransferase compare
PP_4699 -3.7 -5.6 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PP_0362 -3.6 -15.2 Biotin synthase compare
PP_5128 -3.6 -6.2 Dihydroxy-acid dehydratase compare
PP_5104 -3.6 -11.4 thiazole synthase compare
PP_5014 -3.5 -2.4 Phosphoribosyl-AMP cyclohydrolase compare
PP_0420 -3.4 -10.7 aminodeoxychorismate synthase / para-aminobenzoate synthase multi-enzyme complex compare
PP_0364 -3.3 -12.5 pimeloyl-[acp] methyl ester esterase compare
PP_4701 -3.2 -1.2 glucose-6-phosphate isomerase compare
PP_5155 -3.2 -3.8 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_2168 -3.2 -13.0 Transaldolase compare
PP_4922 -3.1 -15.5 Phosphomethylpyrimidine synthase compare
PP_4782 -3.1 -6.9 Phosphomethylpyrimidine kinase compare
PP_0365 -3.1 -11.5 Malonyl-[acyl-carrier protein] O-methyltransferase compare
PP_4984 -3.1 -13.1 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
PP_0363 -3.1 -14.1 8-amino-7-oxononanoate synthase compare
PP_0366 -3.0 -7.5 dethiobiotin synthetase compare
PP_2328 -3.0 -7.2 Phosphoadenosine phosphosulfate reductase compare
PP_2370 -3.0 -2.9 conserved protein of unknown function compare
PP_1025 -2.9 -8.7 2-isopropylmalate synthase compare
PP_2000 -2.8 -2.7 amidophosphoribosyl transferase compare
PP_2737 -2.8 -1.3 Oxidoreductase, short-chain dehydrogenase/reductase family compare
PP_1683 -2.6 -2.5 Transcriptional regulator, MarR family compare
PP_5095 -2.6 -8.0 pyrroline-5-carboxylate reductase compare
PP_1912 -2.6 -6.8 Phosphate acyltransferase compare
PP_0127 -2.4 -10.6 Thiol:disulfide interchange protein compare
PP_0735 -2.3 -1.6 molybdopterin-synthase adenylyltransferase compare
PP_1348 -2.3 -7.2 putative MutT/nudix family protein/thiamine-phosphate pyrophosphorylase compare
PP_3064 -2.2 -2.4 Phage tail protein compare
PP_0291 -2.2 -2.4 conserved protein of unknown function compare
PP_1362 -2.2 -4.2 pyruvate kinase II compare
PP_1664 -2.2 -7.0 phosphoribosylglycinamide formyltransferase 1 compare
PP_3790 -2.1 -10.1 diaminopimelate epimerase compare
PP_1022 -2.1 -4.6 glucose 6-phosphate-1-dehydrogenase compare
PP_1493 -2.1 -3.9 chemotaxis response regulator protein-glutamate methylesterase of group 3 operon compare
PP_2414 -2.0 -2.2 conserved exported protein of unknown function compare
PP_5225 -1.9 -1.2 frataxin compare
PP_5350 -1.9 -4.2 Transcriptional regulator, RpiR family compare
PP_3519 -1.9 -1.0 putative Lipoprotein compare
PP_1426 -1.7 -10.6 L-aspartate oxidase compare
PP_0513 -1.7 -1.1 DNA-binding transcriptional repressor NrdR-Zn2+-ATP/dATP compare
PP_2402 -1.7 -1.9 putative Sensor histidine kinase compare
PP_0164 -1.7 -7.6 conserved protein of unknown function compare
PP_5216 -1.7 -2.9 exopolyphosphatase compare
PP_5456 -1.7 -0.8 conserved protein of unknown function compare
PP_2378 -1.6 -3.9 Fe/S biogenesis protein NfuA compare
PP_2031 -1.6 -0.9 conserved protein of unknown function compare
PP_5110 -1.6 -1.4 cytokinetic ring ABC transporter-like subunit - ATP-binding subunit compare
PP_4528 -1.6 -1.1 conserved protein of unknown function compare
PP_2439 -1.6 -1.8 peroxiredoxin, alkylhydroperoxide reductase - small subunit compare
PP_3105 -1.5 -2.0 conserved membrane protein of unknown function compare
PP_1216 -1.5 -1.0 Holliday junction ATP-dependent DNA helicase RuvA compare
PP_2847 -1.5 -1.0 Urease accessory protein UreJ compare
PP_0809 -1.5 -8.2 disulfide bond formation protein B compare
PP_1328 -1.5 -1.7 Protein MraZ compare
PP_2107 -1.5 -2.4 conserved protein of unknown function compare
PP_5445 -1.5 -2.3 conserved protein of unknown function compare
PP_0377 -1.5 -1.7 coenzyme PQQ synthesis protein D compare
PP_1654 -1.5 -3.4 cysteine synthase B compare
PP_1215 -1.4 -1.2 Crossover junction endodeoxyribonuclease RuvC compare
PP_4684 -1.4 -6.6 conserved protein of unknown function with kinase-like domain compare
PP_2348 -1.4 -3.6 Sensor histidine kinase compare
PP_0401 -1.4 -0.9 Ribosomal RNA small subunit methyltransferase A compare
PP_3649 -1.4 -0.9 Transcriptional regulator, GntR family compare
PP_4122 -1.4 -1.7 proton-pumping NADH:ubiquinone oxidoreductase, respiratory complex I, subunit E compare
PP_4546 -1.4 -3.4 ATP-dependent helicase HrpA compare
PP_5227 -1.3 -6.5 diaminopimelate decarboxylase compare
PP_1310 -1.3 -2.1 conserved hypothetical protein compare
PP_4966 -1.3 -2.4 transcriptional regulator of methionine metabolism compare
PP_5028 -1.3 -3.0 proline iminopeptidase compare
PP_3417 -1.3 -5.2 D-gluconate transporter compare
PP_2442 -1.3 -1.7 conserved protein of unknown function, DUF480 family compare
PP_0065 -1.3 -2.5 NAD-binding component of TrK potassium transporter compare
PP_5441 -1.3 -2.3 protein of unknown function compare
PP_1783 -1.3 -0.8 dTDP-glucose pyrophosphorylase compare
PP_4098 -1.2 -0.8 UvrABC system protein C compare
PP_3637 -1.2 -3.2 putative Sulfonate ABC transporter, ATP-binding protein compare
PP_4902 -1.2 -2.6 Oligoribonuclease compare
PP_4126 -1.2 -1.2 NADH-quinone oxidoreductase subunit I compare
PP_5309 -1.2 -0.8 oxidative and nitrosative stress transcriptional dual regulator compare
PP_4874 -1.2 -1.1 50S ribosomal protein L9 compare
PP_1269 -1.2 -0.7 Universal stress protein family compare
PP_0022 -1.1 -0.7 hypothetical protein compare
PP_4396 -1.1 -3.1 conserved protein of unknown function compare
PP_1214 -1.1 -1.5 putative transcriptional regulatory protein compare
PP_5331 -1.1 -2.4 Long-chain acyl-CoA thioester hydrolase compare
PP_4004 -1.1 -3.5 DNA translocase FtsK compare
PP_t10 -1.1 -0.9 tRNA-Pro compare
PP_1366 -1.1 -2.3 Transcriptional regulator MvaT, P16 subunit compare
PP_4121 -1.1 -1.6 NADH-quinone oxidoreductase subunit C/D compare
PP_1217 -1.1 -1.7 Holliday junction ATP-dependent DNA helicase RuvB compare
PP_4584 -1.1 -2.4 putative endonuclease compare
PP_4804 -1.0 -3.1 RlpA-like lipoprotein compare
PP_1808 -1.0 -2.0 glucose-6-phosphate isomerase compare
PP_3359 -1.0 -1.8 putative Hydroxycinnamic acid degradation regulator compare
PP_0393 -1.0 -0.9 putative 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase compare
PP_2575 -1.0 -1.3 conserved exported protein of unknown function compare
PP_3614 -1.0 -2.0 conserved membrane protein of unknown function compare
PP_4693 -1.0 -2.0 RNA polymerase-binding transcription factor DksA compare
PP_1468 -0.9 -1.3 Tyrosine recombinase XerD compare
PP_2027 -0.9 -3.0 conserved exported protein of unknown function compare
PP_4910 -0.9 -1.1 conserved protein of unknown function compare
PP_0368 -0.9 -6.1 putative Acyl-CoA dehydrogenase compare
PP_3484 -0.9 -2.1 Response regulator receiver protein compare
PP_0663 -0.9 -2.0 Transcriptional regulator, AsnC family compare
PP_4532 -0.9 -2.2 ATP-dependent DEAD-box RNA helicase require for 50S ribosomal subunit biogenesis compare
PP_4993 -0.9 -2.9 Glutathione synthetase compare
PP_2387 -0.9 -1.2 conserved protein of unknown function compare
PP_1734 -0.9 -1.0 Probable septum site-determining protein MinC compare
PP_4500 -0.9 -1.7 TrpH family protein compare
PP_4124 -0.9 -2.1 NADH-quinone oxidoreductase subunit G compare
PP_4591 -0.9 -2.8 Ribonuclease D compare
PP_0381 -0.9 -3.9 Coenzyme PQQ synthesis protein F compare
PP_2820 -0.9 -2.1 HTH-type transcriptional regulator nfxB compare
PP_3580 -0.9 -1.9 conserved protein of unknown function compare
PP_2302 -0.9 -3.7 DNA-binding, ATP-dependent protease compare
PP_3789 -0.9 -3.7 putative Efflux transporter compare
PP_5035 -0.9 -3.9 Histidine utilization repressor compare
PP_4120 -0.9 -1.8 NADH-quinone oxidoreductase subunit B compare
PP_2429 -0.9 -1.8 putative Membrane protein compare
PP_3904 -0.9 -1.5 conserved protein of unknown function compare
PP_3551 -0.9 -0.9 DNA-binding response regulator, LuxR family compare
PP_4196 -0.8 -1.3 conserved exported protein of unknown function compare
PP_3443 -0.8 -5.2 putative glyceraldehyde-3-phosphate dehydrogenase compare
PP_4162 -0.8 -1.8 conserved membrane protein of unknown function compare
PP_2510 -0.8 -1.4 conserved protein of unknown function compare
PP_5055 -0.8 -2.3 Sulfurtransferase compare
PP_4130 -0.8 -3.1 NADH:ubiquinone oxidoreductase, membrane subunit M compare
PP_1629 -0.8 -2.7 Protein RecA compare
PP_0553 -0.8 -2.5 Dihydrolipoyllysine-residue acetyltransferase component of acetoin cleaving system compare
PP_3505 -0.8 -1.7 conserved protein of unknown function compare
PP_0122 -0.8 -1.9 conserved exported protein of unknown function compare
PP_4964 -0.8 -0.9 D-erythrose 4-phosphate dehydrogenase compare
PP_1575 -0.8 -0.9 conserved protein of unknown function compare
PP_0063 -0.8 -2.0 putative Lipid A biosynthesis lauroyl acyltransferase compare
PP_0261 -0.8 -3.3 adenosine-3'(2'),5'-bisphosphate nucleotidase compare
PP_2030 -0.8 -2.8 conserved protein of unknown function compare
PP_5475 -0.8 -1.9 conserved protein of unknown function compare
PP_4575 -0.8 -2.2 Urea amidolyase-related protein compare
PP_5255 -0.8 -2.3 putative hydrolase compare
PP_1774 -0.8 -1.2 conserved exported protein of unknown function compare
PP_5328 -0.8 -3.6 putative phosphate transport system permease protein compare
PP_0087 -0.8 -1.7 conserved exported protein of unknown function compare
PP_4253 -0.8 -1.7 cytochrome c oxidase subunit, cbb3-type compare
PP_1012 -0.8 -1.8 DNA-binding response regulator compare
PP_2336 -0.8 -1.9 aconitate hydratase 1 compare
PP_1637 -0.8 -2.7 Transcriptional regulator, LysR family compare
PP_4271 -0.7 -0.6 conserved protein of unknown function compare
PP_2597 -0.7 -3.1 conserved protein of unknown function compare
PP_1589 -0.7 -4.1 uridylyltransferase compare
PP_1038 -0.7 -0.7 conserved protein of unknown function compare
PP_4799 -0.7 -0.5 putative Muramoyltetrapeptide carboxypeptidase compare


Specific Phenotypes

None in this experiment

For Pseudomonas putida KT2440 in pH experiments

For pH D-Glucose across organisms