Experiment set39IT065 for Pseudomonas putida KT2440

Compare to:

D-Glucose carbon source pH 7.5

200 most detrimental genes:

  gene name fitness t score description  
PP_0948 +1.3 5.3 Phosphocarrier protein HPr compare
PP_4593 +1.3 1.4 conserved protein of unknown function compare
PP_5145 +1.1 9.6 phosphoenolpyruvate-dependent regulator (with NPR and NTR proteins) compare
PP_1099 +1.0 2.5 Cold shock protein CapB compare
PP_3481 +1.0 1.9 conserved exported protein of unknown function compare
PP_4268 +1.0 1.9 nucleoid-associated broad specificity regulator compare
PP_2306 +0.9 2.0 conserved exported protein of unknown function compare
PP_1650 +0.9 7.3 Sensor protein GacS compare
PP_3810 +0.9 1.8 conserved protein of unknown function compare
PP_1445 +0.9 5.9 carbohydrate-selective porin compare
PP_0191 +0.9 3.1 Transcriptional regulatory protein AlgQ compare
PP_4073 +0.9 2.9 conserved exported protein of unknown function compare
PP_1987 +0.9 2.9 Methlytransferase, UbiE/COQ5 family compare
PP_0236 +0.9 1.7 NAD(P)H-dependent FMN reductase subunit compare
PP_2999 +0.9 0.8 Glyoxalase family protein compare
PP_1008 +0.9 2.2 RNA polymerase subunit sigma-24 compare
PP_4171 +0.8 6.8 conserved exported protein of unknown function compare
PP_0152 +0.8 1.7 conserved exported protein of unknown function compare
PP_0001 +0.8 0.9 probable chromosome-partitioning protein compare
PP_4099 +0.8 6.8 two-componenent system BarA/UvrY - regulatory subunit compare
PP_1544 +0.7 1.5 conserved protein of unknown function compare
PP_1655 +0.7 4.0 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD compare
PP_1113 +0.7 4.6 Pyridoxal-phosphate dependent enzyme family protein compare
PP_3392 +0.7 0.8 conserved protein of unknown function compare
PP_4449 +0.7 3.2 conserved protein of unknown function compare
PP_0547 +0.7 2.7 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase compare
PP_0319 +0.7 1.7 conserved protein of unknown function compare
PP_5093 +0.7 0.5 twitching motility protein compare
PP_5017 +0.7 1.0 Sec-independent protein translocase protein TatB compare
PP_2424 +0.7 3.8 putative 2'-5' RNA ligase compare
PP_2889 +0.7 3.7 putative Transmembrane regulator PrtR compare
PP_2186 +0.7 2.6 putative Formate dehydrogenase, delta subunit compare
PP_0685 +0.7 1.9 conserved protein of unknown function compare
PP_5604 +0.7 1.2 putative subtilisin-like serine protease compare
PP_1605 +0.7 2.0 Ribonuclease HII compare
PP_2900 +0.6 1.8 conserved protein of unknown function compare
PP_3971 +0.6 0.8 conserved protein of unknown function compare
PP_0899 +0.6 3.9 putative Ferredoxin reductase compare
PP_3480 +0.6 2.2 conserved protein of unknown function compare
PP_3808 +0.6 1.0 Antibiotic synthesis protein MbtH compare
PP_1938 +0.6 1.5 conserved protein of unknown function compare
PP_2939 +0.6 2.6 toxin of the YefM-YoeB antitoxin/toxin complex and DNA-binding transcriptional repressor compare
PP_3043 +0.6 1.2 conserved protein of unknown function compare
PP_0893 +0.6 2.1 ThiJ/PfpI family protein compare
PP_3245 +0.6 1.2 conserved protein of unknown function compare
PP_0440 +0.6 2.0 Elongation factor Tu-A compare
PP_2147 +0.6 1.5 conserved exported protein of unknown function compare
PP_2511 +0.6 0.9 conserved protein of unknown function compare
PP_0943 +0.6 2.5 conserved protein of unknown function compare
PP_5428 +0.6 1.9 conserved exported protein of unknown function compare
PP_0505 +0.6 3.2 conserved protein of unknown function compare
PP_2819 +0.6 2.1 Outer membrane protein OprJ compare
PP_4982 +0.6 2.8 putative cytochrome b561, iron-regulated compare
PP_5083 +0.6 1.4 putative Type IV pili biogenesis protein PilM compare
PP_2700 +0.5 0.9 AhpC/TSA family protein compare
PP_1487 +0.5 2.5 conserved protein of unknown function compare
PP_4789 +0.5 1.6 heat shock protein, Co2+ and Mg2+ efflux protein compare
PP_1729 +0.5 2.1 conserved protein of unknown function compare
PP_4721 +0.5 1.9 conserved membrane protein of unknown function compare
PP_4373 +0.5 4.4 Transcriptional regulator FleQ compare
PP_5038 +0.5 1.3 conserved lipoprotein of unknown function compare
PP_4520 +0.5 1.7 conserved protein of unknown function compare
PP_3164 +0.5 2.3 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase compare
PP_5480 +0.5 2.3 conserved exported protein of unknown function compare
PP_2243 +0.5 2.0 conserved protein of unknown function compare
PP_4778 +0.5 1.7 23S rRNA pseudouridine 2457 synthase compare
PP_4847 +0.5 0.9 chaperone modulatory of CbpA co-chaperone protein compare
PP_2127 +0.5 1.6 Sensor histidine kinase compare
PP_2430 +0.5 2.4 Transcriptional regulator, AraC family compare
PP_3933 +0.5 2.2 conserved membrane protein of unknown function compare
PP_5248 +0.5 0.4 putative hydrolase compare
PP_0150 +0.5 2.4 conserved exported protein of unknown function compare
PP_4030 +0.5 2.3 Enoyl-CoA hydratase/isomerase family protein compare
PP_4771 +0.5 2.2 conserved membrane protein of unknown function compare
PP_3726 +0.5 0.4 Enoyl-CoA hydratase/isomerase family protein compare
PP_4564 +0.5 1.5 putative Lipoprotein compare
PP_2759 +0.5 1.3 ribose ABC transporter - ATP-binding subunit compare
PP_2307 +0.5 1.3 conserved protein of unknown function compare
PP_2593 +0.5 2.2 Ferric siderophore ABC transporter, permease protein compare
PP_2646 +0.5 2.0 conserved protein of unknown function compare
PP_1201 +0.5 2.0 conserved exported protein of unknown function compare
PP_4341 +0.5 2.4 RNA polymerase sigma 28 (sigma F) factor for class III flagellar operons compare
PP_5545 +0.5 1.9 protein of unknown function compare
PP_2756 +0.5 1.6 conserved protein of unknown function compare
PP_4541 +0.5 1.7 peptidyl-prolyl cis-trans isomerase A (rotamase A) compare
PP_2816 +0.5 1.2 putative Transcriptional regulator NfxB compare
PP_2557 +0.5 2.1 Sensory box protein compare
PP_3014 +0.5 0.7 conserved exported protein of unknown function compare
PP_5588 +0.5 1.5 conserved protein of unknown function compare
PP_5085 +0.5 2.4 malic enzyme B compare
PP_4978 +0.4 2.2 conserved protein of unknown function compare
PP_1415 +0.4 1.0 putative membrane associated enzyme subunit compare
PP_5491 +0.4 0.6 conserved protein of unknown function with SEC-C motif domain compare
PP_5537 +0.4 1.0 conserved membrane protein of unknown function compare
PP_4163 +0.4 2.1 conserved exported protein of unknown function compare
PP_5100 +0.4 1.0 dITP/XTP pyrophosphatase compare
PP_1261 +0.4 1.1 2-ketoaldonate reductase / hydroxypyruvate/glyoxylate reductase compare
PP_2577 +0.4 2.4 putative paraquat-inducible protein B (pqiB like) compare
PP_0593 +0.4 0.4 putative ribosome-binding factor compare
PP_4837 +0.4 1.4 conserved protein of unknown function compare
PP_2898 +0.4 0.9 conserved exported protein of unknown function compare
PP_3192 +0.4 1.2 conserved protein of unknown function compare
PP_2960 +0.4 1.9 transcriptional regulator, AraC family compare
PP_1114 +0.4 2.2 SEC-C domain protein compare
PP_5027 +0.4 0.7 D-tyrosyl-tRNA(Tyr) deacylase compare
PP_0048 +0.4 0.5 conserved protein of unknown function compare
PP_2014 +0.4 1.7 conserved membrane protein of unknown function compare
PP_5338 +0.4 1.0 aspartate ammonia-lyase compare
PP_0316 +0.4 2.3 putative glycine-betaine dioxygenase subunit compare
PP_5723 +0.4 1.7 protein of unknown function compare
PP_3831 +0.4 1.8 conserved protein of unknown function compare
PP_5528 +0.4 0.9 conserved protein of unknown function compare
PP_2640 +0.4 1.7 Acetyltransferase, GNAT family compare
PP_4499 +0.4 1.3 putative maturation enzyme compare
PP_4385 +0.4 2.8 flagellar basal-body rod protein FlgG compare
PP_3880 +0.4 0.6 conserved exported protein of unknown function compare
PP_0775 +0.4 0.7 conserved protein of unknown function compare
PP_4997 +0.4 0.6 pyrimidine operon regulatory protein/uracil phosphoribosyltransferase compare
PP_3075 +0.4 1.3 putative transcriptional regulator compare
PP_0181 +0.4 1.7 conserved protein of unknown function compare
PP_1824 +0.4 0.8 Smr domain protein compare
PP_1055 +0.4 0.4 Type II secretion pathway protein GspN compare
PP_0630 +0.4 0.5 DNA gyrase inhibitor YacG compare
PP_4710 +0.4 2.9 tRNA pseudouridine 55 synthase compare
PP_2225 +0.4 1.6 putative Multicomponent potassium-proton antiporter, subunit G compare
PP_2923 +0.4 1.6 conserved protein of unknown function compare
PP_4256 +0.4 1.4 cytochrome c oxidase subunit, cbb3-type compare
PP_2890 +0.4 2.5 exodeoxyribonuclease III / apurinic/apyrimidinic endodeoxyribonuclease VI compare
PP_0574 +0.4 2.8 DNA-binding response regulator, LuxR family compare
PP_1064 +0.4 2.1 Hydrolase, alpha/beta fold family compare
PP_1826 +0.4 1.3 Hydrolase, isochorismatase family compare
PP_5042 +0.4 1.5 conserved protein of unknown function compare
PP_1060 +0.4 2.1 putative Glutamate synthase, large subunit compare
PP_1074 +0.4 1.4 DNA-binding transcriptional repressor - GlpR-glycerol-3-phosphate compare
PP_1713 +0.4 0.5 Transcriptional regulator PcaQ compare
PP_0627 +0.4 0.9 conserved protein of unknown function compare
PP_3473 +0.4 1.8 curli secretion and assembly outer membrane associated component compare
PP_0330 +0.4 1.8 hypothetical protein compare
PP_3083 +0.4 1.7 putative Membrane protein compare
PP_1048 +0.4 0.7 putative protein secretion protein for export compare
PP_0903 +0.4 1.7 conserved protein of unknown function compare
PP_3942 +0.4 2.1 maleate isomerase compare
PP_3541 +0.4 0.7 Transporter, MgtC family compare
PP_1028 +0.4 1.3 Transcriptional regulator, LysR family compare
PP_2835 +0.4 2.2 putative oxidoreductase compare
PP_0411 +0.4 1.6 Polyamine ABC transporter, ATP-binding protein compare
PP_5582 +0.4 0.5 conserved protein of unknown function compare
PP_0333 +0.4 1.6 conserved exported protein of unknown function compare
PP_2717 +0.4 1.2 arsenite/antimonite transporter compare
PP_0058 +0.4 3.2 putative 1-acyl-sn-glycerol-3-phosphate acyltransferase compare
PP_1649 +0.4 1.2 D-lactate dehydrogenase compare
PP_3217 +0.4 1.6 putative Periplasmic aliphatic sulfonate-binding protein compare
PP_4365 +0.4 1.5 Flagellar protein FliJ compare
PP_0051 +0.4 1.9 putative sigma-54 dependent transcriptional regulator compare
PP_1619 +0.4 1.4 tRNA pseudouridine synthase D compare
PP_2681 +0.4 1.3 coenzyme PQQ synthesis protein D compare
PP_4762 +0.4 1.7 Acyl-CoA thioesterase II compare
PP_5483 +0.4 0.5 conserved protein of unknown function compare
PP_2513 +0.4 1.1 4-oxalomesaconate tautomerase compare
PP_0240 +0.4 0.9 Aliphatic sulfonates import ATP-binding protein SsuB compare
PP_5707 +0.4 1.5 conserved protein of unknown function compare
PP_0841 +0.4 1.2 DNA-binding transcriptional dual regulator 2Fe-2S cluster IscR compare
PP_1447 +0.4 1.7 conserved protein of unknown function compare
PP_2360 +0.4 1.9 putative type 1 pili subunit CsuA/B protein compare
PP_0269 +0.4 1.7 putative Glutamate synthase, large subunit compare
PP_4452 +0.4 1.4 NAD/NADP octopine/nopaline dehydrogenase family protein compare
PP_0279 +0.4 2.0 conserved protein of unknown function compare
PP_2416 +0.4 1.2 putative Iron ABC transporter, ATP-binding protein compare
PP_5519 +0.4 1.9 conserved protein of unknown function of phage origin compare
PP_0345 +0.3 1.7 putative Heptose kinase WapP compare
PP_3607 +0.3 2.0 conserved membrane protein of unknown function compare
PP_0125 +0.3 1.5 putative cytochrome c-type protein compare
PP_2650 +0.3 0.6 putative 4-hydroxybutyrate dehydrogenase compare
PP_4228 +0.3 1.7 conserved protein of unknown function compare
PP_0092 +0.3 2.0 putative lipoprotein compare
PP_2142 +0.3 0.6 Cell division inhibitor SulA compare
PP_5174 +0.3 1.6 Efflux membrane fusion protein, RND family compare
PP_0241 +0.3 1.3 Transporter compare
PP_2532 +0.3 2.3 conserved protein of unknown function compare
PP_5161 +0.3 2.4 putative lysophospholipase compare
PP_3488 +0.3 2.0 Sco1/SenC family protein compare
PP_2122 +0.3 1.1 molybdenum cofactor biosynthesis protein B compare
PP_0913 +0.3 2.3 conserved exported protein of unknown function compare
PP_1522 +0.3 1.9 major cold shock protein compare
PP_1845 +0.3 1.4 Enoyl-CoA hydratase/isomerase family protein compare
PP_4742 +0.3 2.1 Type I restriction-modification system, S subunit compare
PP_2408 +0.3 1.5 cobalt-zinc-cadmium resistance protein compare
PP_5490 +0.3 1.8 site-specific DNA recombinase compare
PP_2899 +0.3 0.4 conserved exported protein of unknown function compare
PP_5558 +0.3 0.8 putative transcriptional xre family of phage origin compare
PP_3924 +0.3 1.1 conserved protein of unknown function compare
PP_2750 +0.3 1.1 putative Branched-chain amino acid ABC transporter, permease protein compare
PP_4069 +0.3 1.0 conserved protein of unknown function compare
PP_4300 +0.3 1.9 putative hydroxypyruvate reductase compare
PP_1083 +0.3 1.2 (2Fe-2S)-binding protein compare
PP_0874 +0.3 0.6 conserved protein of unknown function compare
PP_5476 +0.3 1.7 conserved protein of unknown function compare
PP_1093 +0.3 2.0 putative electron transport complex protein compare
PP_3906 +0.3 0.7 conserved protein of unknown function compare
PP_0151 +0.3 1.3 conserved exported protein of unknown function compare


Specific Phenotypes

None in this experiment

For Pseudomonas putida KT2440 in pH experiments

For pH D-Glucose across organisms