Experiment set39IT064 for Pseudomonas putida KT2440

Compare to:

D-Glucose carbon source pH 7

200 most important genes:

  gene name fitness t score description  
PP_4724 -9.9 -13.7 Carbamoyl-phosphate synthase small chain compare
PP_4723 -8.1 -26.2 Carbamoyl-phosphate synthase large chain compare
PP_0293 -7.4 -4.6 Imidazole glycerol phosphate synthase subunit HisF compare
PP_4999 -6.8 -4.7 dihydroorotase-like protein compare
PP_3511 -6.3 -6.1 Branched-chain-amino-acid aminotransferase compare
PP_1985 -6.2 -4.3 3-isopropylmalate dehydratase large subunit compare
PP_1988 -6.1 -4.2 3-isopropylmalate dehydrogenase compare
PP_1995 -6.0 -5.8 N-(5'-phosphoribosyl)anthranilate isomerase compare
PP_4678 -6.0 -5.8 Ketol-acid reductoisomerase compare
PP_0966 -6.0 -7.1 Histidinol dehydrogenase compare
PP_0422 -5.9 -5.7 Indole-3-glycerol phosphate synthase compare
PP_1079 -5.8 -5.6 Ornithine carbamoyltransferase compare
PP_0691 -5.7 -11.6 Glutamate 5-kinase compare
PP_0965 -5.7 -10.9 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_1088 -5.7 -10.2 Argininosuccinate synthase compare
PP_4890 -5.6 -3.9 ATP phosphoribosyltransferase regulatory subunit compare
PP_2327 -5.6 -8.5 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_1231 -5.5 -5.4 quinolinate synthase [4Fe-4S] cluster subunit compare
PP_4680 -5.5 -6.6 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_4700 -5.4 -3.7 pantothenate synthetase compare
PP_0787 -5.4 -5.2 quinolinate phosphoribosyltransferase (decarboxylating) monomer compare
PP_5097 -5.3 -10.8 homoserine O-acetyltransferase compare
PP_0417 -5.3 -16.0 Anthranilate synthase component 1 compare
PP_0967 -5.2 -11.0 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_5098 -5.2 -6.1 methionine biosynthesis protein MetW compare
PP_0290 -5.2 -3.6 Imidazole glycerol phosphate synthase subunit HisH compare
PP_5348 -5.1 -12.0 Transcriptional regulator, LysR family compare
PP_5347 -5.1 -9.2 pyruvate carboxylase subunit A compare
PP_2001 -5.0 -10.6 O-succinylhomoserine sulfhydrylase compare
PP_4909 -5.0 -11.1 phosphoserine phosphatase compare
PP_4679 -5.0 -3.4 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_5185 -4.9 -5.9 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_1986 -4.9 -3.4 3-isopropylmalate dehydratase small subunit compare
PP_5015 -4.8 -6.5 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PP_4364 -4.8 -6.5 putative Anti-sigma F factor antagonist compare
PP_0420 -4.8 -12.3 aminodeoxychorismate synthase / para-aminobenzoate synthase multi-enzyme complex compare
PP_5346 -4.7 -13.7 pyruvate carboxylase subunit B compare
PP_2371 -4.4 -4.3 Sulphite reductase hemoprotein, beta subunit compare
PP_3999 -4.4 -5.2 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_5289 -4.3 -4.2 Acetylglutamate kinase compare
PP_0184 -4.3 -4.2 Argininosuccinate lyase compare
PP_5128 -4.3 -8.4 Dihydroxy-acid dehydratase compare
PP_0421 -4.2 -8.1 Anthranilate phosphoribosyltransferase compare
PP_0289 -4.2 -6.5 Imidazoleglycerol-phosphate dehydratase compare
PP_0292 -4.1 -2.8 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_5303 -4.1 -6.3 aminoacrylate/iminopropionate hydrolase/deaminase compare
PP_0082 -4.1 -2.8 tryptophan synthase alpha chain compare
PP_0083 -4.0 -2.7 tryptophan synthase beta chain compare
PP_0291 -3.9 -3.8 conserved protein of unknown function compare
PP_5155 -3.8 -4.6 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_0363 -3.7 -15.3 8-amino-7-oxononanoate synthase compare
PP_3105 -3.6 -3.0 conserved membrane protein of unknown function compare
PP_0339 -3.6 -4.3 Pyruvate dehydrogenase E1 component compare
PP_4696 -3.6 -6.0 Nitrogen regulation protein NR(I) compare
PP_5104 -3.6 -11.2 thiazole synthase compare
PP_4984 -3.4 -12.2 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
PP_4699 -3.3 -6.3 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PP_0164 -3.3 -10.6 conserved protein of unknown function compare
PP_4701 -3.2 -1.2 glucose-6-phosphate isomerase compare
PP_0127 -3.2 -9.1 Thiol:disulfide interchange protein compare
PP_2414 -3.2 -3.3 conserved exported protein of unknown function compare
PP_5014 -3.1 -3.7 Phosphoribosyl-AMP cyclohydrolase compare
PP_0362 -3.1 -10.6 Biotin synthase compare
PP_1233 -3.1 -9.2 sulfurtransferase compare
PP_0364 -3.0 -14.5 pimeloyl-[acp] methyl ester esterase compare
PP_2328 -3.0 -8.3 Phosphoadenosine phosphosulfate reductase compare
PP_5095 -2.9 -9.0 pyrroline-5-carboxylate reductase compare
PP_4782 -2.9 -8.5 Phosphomethylpyrimidine kinase compare
PP_4922 -2.9 -14.9 Phosphomethylpyrimidine synthase compare
PP_1025 -2.8 -8.8 2-isopropylmalate synthase compare
PP_2000 -2.7 -2.6 amidophosphoribosyl transferase compare
PP_0366 -2.7 -6.5 dethiobiotin synthetase compare
PP_2168 -2.7 -12.8 Transaldolase compare
PP_1362 -2.6 -4.2 pyruvate kinase II compare
PP_5393 -2.5 -1.2 putative metal-binding chaperone compare
PP_2370 -2.4 -3.2 conserved protein of unknown function compare
PP_1348 -2.4 -6.8 putative MutT/nudix family protein/thiamine-phosphate pyrophosphorylase compare
PP_0365 -2.4 -8.8 Malonyl-[acyl-carrier protein] O-methyltransferase compare
PP_0775 -2.4 -2.5 conserved protein of unknown function compare
PP_3790 -2.4 -11.2 diaminopimelate epimerase compare
PP_0963 -2.3 -4.1 putative BolA family protein compare
PP_1493 -2.3 -4.3 chemotaxis response regulator protein-glutamate methylesterase of group 3 operon compare
PP_1022 -2.2 -4.4 glucose 6-phosphate-1-dehydrogenase compare
PP_5110 -2.2 -1.6 cytokinetic ring ABC transporter-like subunit - ATP-binding subunit compare
PP_2442 -2.2 -2.2 conserved protein of unknown function, DUF480 family compare
PP_0809 -2.1 -10.9 disulfide bond formation protein B compare
PP_1912 -2.1 -7.6 Phosphate acyltransferase compare
PP_3806 -2.0 -3.2 Hydrolase, isochorismatase family compare
PP_4910 -2.0 -1.3 conserved protein of unknown function compare
PP_1664 -1.8 -6.1 phosphoribosylglycinamide formyltransferase 1 compare
PP_1426 -1.8 -10.8 L-aspartate oxidase compare
PP_5350 -1.8 -4.5 Transcriptional regulator, RpiR family compare
PP_0735 -1.8 -1.4 molybdopterin-synthase adenylyltransferase compare
PP_0250 -1.7 -1.6 heat shock protein Hsp15 involved in ribosome recycling compare
PP_1654 -1.7 -3.2 cysteine synthase B compare
PP_2348 -1.7 -3.0 Sensor histidine kinase compare
PP_1237 -1.7 -1.0 4-hydroxy-tetrahydrodipicolinate synthase compare
PP_0001 -1.6 -1.1 probable chromosome-partitioning protein compare
PP_5456 -1.6 -0.8 conserved protein of unknown function compare
PP_3484 -1.6 -2.9 Response regulator receiver protein compare
PP_5227 -1.6 -7.4 diaminopimelate decarboxylase compare
PP_0513 -1.6 -1.1 DNA-binding transcriptional repressor NrdR-Zn2+-ATP/dATP compare
PP_5331 -1.6 -5.9 Long-chain acyl-CoA thioester hydrolase compare
PP_4342 -1.6 -2.8 flagellar synthesis regulator, putative ATPase compare
PP_3637 -1.6 -3.7 putative Sulfonate ABC transporter, ATP-binding protein compare
PP_1215 -1.6 -1.1 Crossover junction endodeoxyribonuclease RuvC compare
PP_3808 -1.6 -1.1 Antibiotic synthesis protein MbtH compare
PP_4247 -1.5 -1.0 Exonuclease compare
PP_3365 -1.5 -1.1 Acetolactate synthase compare
PP_5201 -1.5 -2.3 conserved protein of unknown function, UPF0149 family compare
PP_0833 -1.5 -2.7 queuine tRNA-ribosyltransferase compare
PP_4684 -1.5 -7.9 conserved protein of unknown function with kinase-like domain compare
PP_1216 -1.5 -1.0 Holliday junction ATP-dependent DNA helicase RuvA compare
PP_2302 -1.5 -5.6 DNA-binding, ATP-dependent protease compare
PP_3522 -1.4 -2.4 conserved protein of unknown function compare
PP_2388 -1.4 -3.9 Transporter, LysE family compare
PP_0856 -1.4 -3.5 conserved lipoprotein of unknown function compare
PP_2337 -1.4 -2.1 aconitate isomerase compare
PP_1468 -1.4 -2.1 Tyrosine recombinase XerD compare
PP_2029 -1.3 -1.6 von Willebrand factor type A domain protein compare
PP_3649 -1.3 -0.9 Transcriptional regulator, GntR family compare
PP_2336 -1.3 -2.4 aconitate hydratase 1 compare
PP_0152 -1.3 -1.6 conserved exported protein of unknown function compare
PP_2439 -1.3 -1.9 peroxiredoxin, alkylhydroperoxide reductase - small subunit compare
PP_4130 -1.3 -4.0 NADH:ubiquinone oxidoreductase, membrane subunit M compare
PP_3241 -1.3 -0.8 conserved exported protein of unknown function compare
PP_5216 -1.2 -2.5 exopolyphosphatase compare
PP_0122 -1.2 -3.6 conserved exported protein of unknown function compare
PP_2402 -1.2 -1.9 putative Sensor histidine kinase compare
PP_1466 -1.2 -1.3 Long-chain acyl-CoA thioester hydrolase family protein compare
PP_1783 -1.2 -0.8 dTDP-glucose pyrophosphorylase compare
PP_3519 -1.2 -0.7 putative Lipoprotein compare
PP_4964 -1.2 -1.1 D-erythrose 4-phosphate dehydrogenase compare
PP_1041 -1.2 -1.2 twin arginine protein export complex subunit compare
PP_5309 -1.2 -0.8 oxidative and nitrosative stress transcriptional dual regulator compare
PP_0916 -1.2 -1.5 Amino acid transporter LysE compare
PP_2378 -1.2 -3.0 Fe/S biogenesis protein NfuA compare
PP_2373 -1.1 -1.3 conserved protein of unknown function compare
PP_0022 -1.1 -0.7 hypothetical protein compare
PP_5594 -1.1 -1.6 conserved protein of unknown function compare
PP_2203 -1.1 -2.1 conserved protein of unknown function compare
PP_3946 -1.1 -0.8 HTH-type transcriptional repressor NicR compare
PP_4124 -1.1 -1.9 NADH-quinone oxidoreductase subunit G compare
PP_1589 -1.1 -7.3 uridylyltransferase compare
PP_3417 -1.1 -3.4 D-gluconate transporter compare
PP_5230 -1.1 -1.2 Tyrosine recombinase XerC compare
PP_1322 -1.1 -1.0 putative Lipoprotein compare
PP_4870 -1.1 -2.1 Azurin compare
PP_2217 -1.1 -2.5 enoyl-CoA hydratase compare
PP_1629 -1.0 -3.1 Protein RecA compare
PP_4004 -1.0 -3.5 DNA translocase FtsK compare
PP_0274 -1.0 -0.7 putative transcriptional regulator containing HTH domain compare
PP_5100 -1.0 -1.7 dITP/XTP pyrophosphatase compare
PP_0393 -1.0 -0.7 putative 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase compare
PP_1217 -1.0 -2.0 Holliday junction ATP-dependent DNA helicase RuvB compare
PP_3102 -1.0 -3.2 conserved protein of unknown function compare
PP_4693 -1.0 -2.0 RNA polymerase-binding transcription factor DksA compare
PP_1428 -1.0 -2.5 Sigma factor AlgU negative regulatory protein compare
PP_3821 -1.0 -6.2 UTP-glucose-1-phosphate uridylyltransferase compare
PP_4532 -1.0 -2.2 ATP-dependent DEAD-box RNA helicase require for 50S ribosomal subunit biogenesis compare
PP_0065 -1.0 -2.1 NAD-binding component of TrK potassium transporter compare
PP_5610 -0.9 -1.0 protein of unknown function compare
PP_4094 -0.9 -1.3 conserved protein of unknown function compare
PP_2433 -0.9 -1.5 conserved protein of unknown function compare
PP_5240 -0.9 -1.9 Response regulator compare
PP_2087 -0.9 -1.3 CmpX protein compare
PP_4917 -0.9 -3.4 3',5'-cyclic-nucleotide phosphodiesterase compare
PP_0007 -0.9 -1.9 conserved hypothetical protein compare
PP_3789 -0.9 -3.8 putative Efflux transporter compare
PP_4500 -0.9 -3.1 TrpH family protein compare
PP_1303 -0.9 -6.0 Sulfate adenylyltransferase subunit 2 compare
PP_0621 -0.9 -2.5 conserved protein of unknown function compare
PP_1742 -0.9 -2.0 conserved inner membrane protein of unknown function compare
PP_3239 -0.9 -1.2 putative cointegrate resolution protein T Tn4652 compare
PP_4507 -0.9 -6.2 potassium transporter compare
PP_4829 -0.9 -2.1 putative precorrin-3B synthase compare
PP_1387 -0.9 -3.1 Probable HTH-type transcriptional regulator TtgR compare
PP_4265 -0.9 -2.1 DNA-binding transcriptional dual regulator compare
PP_3328 -0.9 -2.0 putative Ring-cleaving dioxygenase compare
PP_5066 -0.9 -3.4 K(+)/H(+) antiporter NhaP2 compare
PP_1009 -0.9 -2.3 glyceraldehyde-3-phosphate dehydrogenase compare
PP_2820 -0.9 -2.9 HTH-type transcriptional regulator nfxB compare
PP_4993 -0.9 -2.7 Glutathione synthetase compare
PP_5437 -0.9 -1.9 protein of unknown function compare
PP_2928 -0.9 -4.7 Saccharopine dehydrogenase compare
PP_2060 -0.8 -1.4 DNA-binding transcriptional dual regulator - SoxR-reversible one-electron oxidation of its [2Fe-2S] cluster, NADPH-dependent compare
PP_5039 -0.8 -2.4 conserved protein of unknown function compare
PP_5661 -0.8 -1.8 putative lipoprotein compare
PP_2390 -0.8 -4.1 Transcriptional regulator, LysR family compare
PP_4120 -0.8 -1.2 NADH-quinone oxidoreductase subunit B compare
PP_t29 -0.8 -0.8 tRNA-Ala compare
PP_2504 -0.8 -1.5 putative tautomerase K2 compare
PP_3443 -0.8 -5.8 putative glyceraldehyde-3-phosphate dehydrogenase compare
PP_4122 -0.8 -1.6 proton-pumping NADH:ubiquinone oxidoreductase, respiratory complex I, subunit E compare
PP_2475 -0.8 -2.7 Transcriptional regulator, TetR family compare
PP_4902 -0.8 -1.2 Oligoribonuclease compare
PP_3407 -0.8 -2.4 conserved protein of unknown function compare
PP_1366 -0.8 -1.8 Transcriptional regulator MvaT, P16 subunit compare
PP_1186 -0.8 -1.8 two component system DNA-binding transcriptional dual regulator compare
PP_1293 -0.8 -0.8 molybdopterin synthase small subunit compare


Specific Phenotypes

None in this experiment

For Pseudomonas putida KT2440 in pH experiments

For pH D-Glucose across organisms