Experiment set39IT064 for Pseudomonas putida KT2440

Compare to:

D-Glucose carbon source pH 7

200 most detrimental genes:

  gene name fitness t score description  
PP_3726 +1.7 1.4 Enoyl-CoA hydratase/isomerase family protein compare
PP_1650 +1.5 13.2 Sensor protein GacS compare
PP_0846 +1.5 1.9 DnaK-like molecular chaperone specific for IscU compare
PP_4099 +1.4 12.9 two-componenent system BarA/UvrY - regulatory subunit compare
PP_5145 +1.3 11.2 phosphoenolpyruvate-dependent regulator (with NPR and NTR proteins) compare
PP_1055 +1.1 1.2 Type II secretion pathway protein GspN compare
PP_1445 +1.0 6.1 carbohydrate-selective porin compare
PP_0232 +1.0 1.2 ATP-binding taurine transporter subunit compare
PP_4593 +1.0 1.4 conserved protein of unknown function compare
PP_3043 +1.0 1.7 conserved protein of unknown function compare
PP_4171 +1.0 7.7 conserved exported protein of unknown function compare
PP_4151 +0.9 4.7 Excisionase domain protein compare
PP_2999 +0.9 0.8 Glyoxalase family protein compare
PP_1632 +0.9 1.6 conserved protein of unknown function compare
PP_2889 +0.8 4.1 putative Transmembrane regulator PrtR compare
PP_1113 +0.8 5.9 Pyridoxal-phosphate dependent enzyme family protein compare
PP_1655 +0.8 5.4 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD compare
PP_3245 +0.8 1.5 conserved protein of unknown function compare
PP_5167 +0.8 2.3 conserved hypothetical protein compare
PP_4569 +0.8 3.3 conserved protein of unknown function compare
PP_3481 +0.8 1.2 conserved exported protein of unknown function compare
PP_0948 +0.8 2.8 Phosphocarrier protein HPr compare
PP_0246 +0.7 1.4 two-component system DNA-binding response transcriptional dual regulator compare
PP_0306 +0.7 2.3 conserved protein of unknown function compare
PP_2053 +0.7 3.3 conserved protein of unknown function compare
PP_4214 +0.7 2.8 pyoverdine biosynthesis related protein compare
PP_3110 +0.7 1.5 protein of unknown function compare
PP_5546 +0.7 1.2 conserved protein of unknown function compare
PP_2511 +0.7 1.3 conserved protein of unknown function compare
PP_1824 +0.7 1.4 Smr domain protein compare
PP_5621 +0.7 1.7 protein of unknown function compare
PP_0962 +0.7 1.9 toluene-tolerance protein compare
PP_4778 +0.7 2.0 23S rRNA pseudouridine 2457 synthase compare
PP_4642 +0.7 0.6 Cyclic diguanosine monophosphate-binding protein compare
PP_2189 +0.7 1.4 conserved protein of unknown function compare
PP_4268 +0.6 1.1 nucleoid-associated broad specificity regulator compare
PP_1396 +0.6 2.6 conserved protein of unknown function compare
PP_5600 +0.6 1.9 conserved protein of unknown function compare
PP_5500 +0.6 1.6 protein of unknown function compare
PP_1008 +0.6 1.1 RNA polymerase subunit sigma-24 compare
PP_4196 +0.6 0.9 conserved exported protein of unknown function compare
PP_1261 +0.6 2.4 2-ketoaldonate reductase / hydroxypyruvate/glyoxylate reductase compare
PP_3831 +0.6 2.8 conserved protein of unknown function compare
PP_0891 +0.6 2.6 conserved exported protein of unknown function compare
PP_0643 +0.6 1.5 protein of unknown function compare
PP_1410 +0.6 1.0 conserved protein of unknown function compare
PP_3401 +0.6 2.1 conserved protein of unknown function compare
PP_3234 +0.6 1.8 Heat shock protein, HSP20 family compare
PP_4994 +0.6 3.7 conserved protein of unknown function compare
PP_0972 +0.6 1.7 UPF0213 protein PP_0972 compare
PP_4426 +0.6 1.4 Amino acid ABC transporter, permease protein compare
PP_2640 +0.5 2.1 Acetyltransferase, GNAT family compare
PP_2776 +0.5 1.8 Homocysteine S-methyltransferase family protein compare
PP_2816 +0.5 1.1 putative Transcriptional regulator NfxB compare
PP_0377 +0.5 1.1 coenzyme PQQ synthesis protein D compare
PP_1114 +0.5 2.0 SEC-C domain protein compare
PP_3294 +0.5 1.8 Universal stress protein family compare
PP_3898 +0.5 1.8 conserved protein of unknown function compare
PP_5557 +0.5 1.2 protein of unknown function compare
PP_0630 +0.5 0.6 DNA gyrase inhibitor YacG compare
PP_2857 +0.5 0.9 conserved exported protein of unknown function compare
PP_2773 +0.5 0.7 conserved protein of unknown function compare
PP_2784 +0.5 1.6 Oxidoreductase, short-chain dehydrogenase/reductase family compare
PP_5427 +0.5 1.7 conserved exported protein of unknown function compare
PP_2530 +0.5 1.1 conserved protein of unknown function compare
PP_0899 +0.5 3.5 putative Ferredoxin reductase compare
PP_5588 +0.5 1.7 conserved protein of unknown function compare
PP_5558 +0.5 1.9 putative transcriptional xre family of phage origin compare
PP_2701 +0.5 1.7 Transcriptional regulator, LysR family compare
PP_1898 +0.5 1.3 MotA/TolQ/ExbB proton channel family protein compare
PP_2183 +0.5 1.8 putative Formate dehydrogenase, gamma subunit compare
PP_4797 +0.5 1.8 conserved protein of unknown function compare
PP_1392 +0.5 1.6 putative NAD-binding protein compare
PP_1447 +0.5 1.9 conserved protein of unknown function compare
PP_3640 +0.5 1.3 Transcriptional regulator, AraC family compare
PP_5176 +0.5 0.8 conserved protein of unknown function compare
PP_5085 +0.5 2.6 malic enzyme B compare
PP_5528 +0.5 0.7 conserved protein of unknown function compare
PP_3020 +0.5 1.7 putative Serine/threonine protein phosphatase compare
PP_5204 +0.5 1.4 conserved protein of unknown function compare
PP_1523 +0.5 1.6 conserved protein of unknown function compare
PP_3810 +0.5 0.8 conserved protein of unknown function compare
PP_0679 +0.5 2.2 conserved exported protein of unknown function compare
PP_4957 +0.5 2.5 conserved protein of unknown function compare
PP_4859 +0.5 2.8 Transcriptional regulator, TetR family compare
PP_3942 +0.5 2.0 maleate isomerase compare
PP_0429 +0.5 2.2 Oxidoreductase, short chain dehydrogenase/reductase family compare
PP_2090 +0.5 1.7 Uroporphyrinogen-III C-methyltransferase compare
PP_1562 +0.5 1.8 putative Phage terminase, small subunit compare
PP_5508 +0.5 0.4 conserved protein of unknown function compare
PP_2976 +0.5 1.1 putative transposase compare
PP_1153 +0.5 1.5 putative lipoprotein compare
PP_2668 +0.5 0.9 ABC efflux transporter, ATP-binding protein compare
PP_0893 +0.5 1.2 ThiJ/PfpI family protein compare
PP_5512 +0.4 2.6 protein of unknown function compare
PP_1829 +0.4 1.4 Hydrolase, alpha/beta fold family compare
PP_2791 +0.4 1.7 4-hydroxypentanoyl-CoA kinase, subunit LvaA (from data) compare
PP_5000 +0.4 0.6 peptidase component of the ATP-dependent HslVU protease compare
PP_0058 +0.4 4.1 putative 1-acyl-sn-glycerol-3-phosphate acyltransferase compare
PP_1938 +0.4 0.8 conserved protein of unknown function compare
PP_0195 +0.4 0.8 conserved protein of unknown function compare
PP_5659 +0.4 1.4 protein of unknown function compare
PP_1473 +0.4 1.5 conserved protein of unknown function compare
PP_2306 +0.4 0.7 conserved exported protein of unknown function compare
PP_4534 +0.4 1.9 conserved protein of unknown function compare
PP_4982 +0.4 2.2 putative cytochrome b561, iron-regulated compare
PP_3243 +0.4 1.2 Acetyltransferase, GNAT family compare
PP_5027 +0.4 0.5 D-tyrosyl-tRNA(Tyr) deacylase compare
PP_4488 +0.4 1.6 conserved exported protein of unknown function compare
PP_1317 +0.4 1.9 Ubiquinol-cytochrome c reductase iron-sulfur subunit compare
PP_3312 +0.4 1.4 putative Heat shock protein compare
PP_3563 +0.4 0.6 conserved exported protein of unknown function compare
PP_4916 +0.4 1.5 putative esterase compare
PP_1845 +0.4 1.7 Enoyl-CoA hydratase/isomerase family protein compare
PP_5107 +0.4 1.1 Monofunctional biosynthetic peptidoglycan transglycosylase compare
PP_2105 +0.4 1.7 conserved protein of unknown function compare
PP_2960 +0.4 1.2 transcriptional regulator, AraC family compare
PP_5099 +0.4 1.5 conserved protein of unknown function compare
PP_4721 +0.4 1.7 conserved membrane protein of unknown function compare
PP_2785 +0.4 1.4 conserved exported protein of unknown function compare
PP_4768 +0.4 1.7 Exonuclease compare
PP_4710 +0.4 3.1 tRNA pseudouridine 55 synthase compare
PP_0199 +0.4 2.1 putative membrane protease family, stomatin compare
PP_2700 +0.4 0.9 AhpC/TSA family protein compare
PP_0568 +0.4 1.7 conserved protein of unknown function compare
PP_2655 +0.4 1.0 conserved protein of unknown function compare
PP_0509 +0.4 0.9 conserved protein of unknown function compare
PP_4054 +0.4 1.6 conserved protein of unknown function compare
PP_5735 +0.4 1.1 conserved hypothetical protein compare
PP_0411 +0.4 1.9 Polyamine ABC transporter, ATP-binding protein compare
PP_4277 +0.4 2.0 Transcriptional regulator, GntR family compare
PP_3280 +0.4 1.9 3-oxoadipyl-CoA/3-oxo-5,6-dehydrosuberyl-CoA thiolase compare
PP_4689 +0.4 1.7 Heme/hemin ABC transporter, periplasmic heme/hemin-binding protein compare
PP_4133 +0.4 0.7 Transcriptional regulator-related protein compare
PP_4828 +0.4 0.5 Precorrin-8X methylmutase compare
PP_2319 +0.4 1.6 conserved protein of unknown function compare
PP_0273 +0.4 0.9 conserved protein of unknown function compare
PP_3307 +0.4 0.8 conserved protein of unknown function compare
PP_0607 +0.4 1.3 putative Type IV pili biogenesis protein FimT compare
PP_5429 +0.4 2.1 protein of unknown function compare
PP_3892 +0.4 0.5 conserved protein of unknown function compare
PP_5690 +0.4 1.7 conserved protein of unknown function compare
PP_3320 +0.4 1.0 conserved protein of unknown function compare
PP_2454 +0.4 1.8 ribose ABC transporter, periplasmic ribose-binding subunit compare
PP_2683 +0.4 1.9 putative sensory box histidine kinase/response regulator compare
PP_4792 +0.4 0.5 conserved exported protein of unknown function compare
PP_3567 +0.4 2.0 Transcriptional regulator, LysR family compare
PP_3037 +0.4 1.1 C4-type zinc finger protein, DksA/TraR family compare
PP_5052 +0.4 1.4 tRNA(Leu) mC34,mU34 2'-O-ribose methyltransferase, AdoMet-dependent compare
PP_0204 +0.4 1.6 Transcriptional regulator, GntR family compare
PP_4156 +0.4 1.0 Transcriptional regulator, LysR family compare
PP_5698 +0.4 1.4 conserved exported protein of unknown function compare
PP_0834 +0.4 1.0 Sec translocation complex subunit YajC compare
PP_1566 +0.4 1.4 Peptidase U35 compare
PP_2950 +0.4 0.8 conserved protein of unknown function compare
PP_0313 +0.4 1.1 putative electron transfer flavoprotein beta subunit compare
PP_1930 +0.4 1.3 arsenic resistance transcriptional regulator compare
PP_2142 +0.4 1.0 Cell division inhibitor SulA compare
PP_5253 +0.4 0.8 Arylesterase compare
PP_2163 +0.4 2.2 VacJ lipoprotein compare
PP_5313 +0.4 0.7 DNA-binding protein HU-alpha compare
PP_1609 +0.4 0.7 conserved protein of unknown function compare
PP_4271 +0.4 0.4 conserved protein of unknown function compare
PP_1282 +0.4 2.5 Alginate biosynthesis protein AlgX compare
PP_4764 +0.4 1.7 Histone deacetylase family protein compare
PP_5073 +0.4 0.5 conserved exported protein of unknown function compare
PP_2054 +0.4 1.1 putative DNA-binding transcriptional regulator compare
PP_2103 +0.4 1.1 conserved protein of unknown function compare
PP_0191 +0.4 1.1 Transcriptional regulatory protein AlgQ compare
PP_0773 +0.4 1.5 OmpA/MotB domain-containing protein compare
PP_2759 +0.4 0.8 ribose ABC transporter - ATP-binding subunit compare
PP_0440 +0.4 1.1 Elongation factor Tu-A compare
PP_3474 +0.4 1.8 putative Curli fiber protein CsgE compare
PP_0574 +0.4 2.5 DNA-binding response regulator, LuxR family compare
PP_1074 +0.4 1.0 DNA-binding transcriptional repressor - GlpR-glycerol-3-phosphate compare
PP_0803 +0.4 2.0 Protein secretion ABC efflux system, membrane fusion protein compare
PP_1926 +0.3 1.6 putative phosphotyrosine-protein phosphatase compare
PP_1071 +0.3 1.8 glutamate / aspartate ABC transporter - periplasmic binding protein compare
PP_5120 +0.3 2.4 coniferyl aldehyde dehydrogenase compare
PP_0827 +0.3 1.2 putative phosphonate transport system permease protein PtxC compare
PP_1646 +0.3 1.9 putative Thioredoxin compare
PP_2847 +0.3 0.5 Urease accessory protein UreJ compare
PP_1038 +0.3 0.5 conserved protein of unknown function compare
PP_0958 +0.3 2.1 phospholipid ABC transporter ATP-binding subunit compare
PP_0750 +0.3 1.5 conserved protein of unknown function compare
PP_3404 +0.3 1.0 conserved protein of unknown function compare
PP_3198 +0.3 0.9 Ferredoxin, 2Fe-2S compare
PP_4785 +0.3 1.5 conserved exported protein of unknown function compare
PP_2243 +0.3 1.3 conserved protein of unknown function compare
PP_4568 +0.3 1.5 putative metabolite efflux pump compare
PP_0703 +0.3 1.0 putative Transmembrane sensor compare
PP_2980 +0.3 1.6 conserved protein of unknown function compare
PP_5208 +0.3 1.8 putative translation related protein compare
PP_0742 +0.3 2.0 conserved exported protein of unknown function compare
PP_3277 +0.3 0.9 ring 1,2-phenylacetyl-CoA epoxidase regulatory subunit compare
PP_0682 +0.3 1.2 conserved inner membrane protein of unknown function, UPF0114 family compare
PP_3685 +0.3 1.5 conserved protein of unknown function compare
PP_5200 +0.3 1.8 proline aminopeptidase P II compare
PP_2409 +0.3 1.0 cobalt-zinc-cadmium resistance protein compare
PP_0345 +0.3 1.5 putative Heptose kinase WapP compare


Specific Phenotypes

None in this experiment

For Pseudomonas putida KT2440 in pH experiments

For pH D-Glucose across organisms