Experiment set39IT063 for Pseudomonas putida KT2440

Compare to:

D-Glucose carbon source pH 7

200 most important genes:

  gene name fitness t score description  
PP_4724 -8.2 -11.1 Carbamoyl-phosphate synthase small chain compare
PP_4723 -7.8 -27.4 Carbamoyl-phosphate synthase large chain compare
PP_4999 -6.8 -4.7 dihydroorotase-like protein compare
PP_3511 -6.7 -4.6 Branched-chain-amino-acid aminotransferase compare
PP_0787 -6.3 -4.4 quinolinate phosphoribosyltransferase (decarboxylating) monomer compare
PP_1079 -6.2 -4.3 Ornithine carbamoyltransferase compare
PP_1995 -6.2 -4.3 N-(5'-phosphoribosyl)anthranilate isomerase compare
PP_0967 -6.2 -7.4 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_1985 -6.2 -4.3 3-isopropylmalate dehydratase large subunit compare
PP_1988 -6.1 -4.2 3-isopropylmalate dehydrogenase compare
PP_4678 -5.8 -7.9 Ketol-acid reductoisomerase compare
PP_1231 -5.7 -4.0 quinolinate synthase [4Fe-4S] cluster subunit compare
PP_4680 -5.6 -6.7 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_5097 -5.6 -10.0 homoserine O-acetyltransferase compare
PP_2327 -5.5 -8.5 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_0965 -5.5 -10.6 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_5348 -5.5 -11.7 Transcriptional regulator, LysR family compare
PP_1088 -5.5 -11.7 Argininosuccinate synthase compare
PP_4909 -5.5 -9.1 phosphoserine phosphatase compare
PP_5098 -5.4 -5.3 methionine biosynthesis protein MetW compare
PP_0966 -5.4 -10.3 Histidinol dehydrogenase compare
PP_4700 -5.4 -3.7 pantothenate synthetase compare
PP_0417 -5.3 -16.6 Anthranilate synthase component 1 compare
PP_0422 -5.3 -6.3 Indole-3-glycerol phosphate synthase compare
PP_5346 -5.3 -13.2 pyruvate carboxylase subunit B compare
PP_5289 -5.2 -3.6 Acetylglutamate kinase compare
PP_0290 -5.2 -3.6 Imidazole glycerol phosphate synthase subunit HisH compare
PP_0420 -5.1 -11.0 aminodeoxychorismate synthase / para-aminobenzoate synthase multi-enzyme complex compare
PP_5015 -4.9 -5.9 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PP_0293 -4.9 -4.2 Imidazole glycerol phosphate synthase subunit HisF compare
PP_1986 -4.9 -3.3 3-isopropylmalate dehydratase small subunit compare
PP_5185 -4.8 -5.7 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_4890 -4.8 -4.7 ATP phosphoribosyltransferase regulatory subunit compare
PP_0691 -4.8 -13.1 Glutamate 5-kinase compare
PP_5347 -4.7 -12.5 pyruvate carboxylase subunit A compare
PP_2001 -4.7 -9.3 O-succinylhomoserine sulfhydrylase compare
PP_5303 -4.5 -5.3 aminoacrylate/iminopropionate hydrolase/deaminase compare
PP_3999 -4.5 -4.4 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_4679 -4.4 -4.3 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_5155 -4.4 -6.3 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_0184 -4.4 -3.0 Argininosuccinate lyase compare
PP_4364 -4.2 -6.2 putative Anti-sigma F factor antagonist compare
PP_2371 -4.2 -5.8 Sulphite reductase hemoprotein, beta subunit compare
PP_0289 -4.2 -7.4 Imidazoleglycerol-phosphate dehydratase compare
PP_0292 -4.1 -2.9 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_0082 -4.1 -2.8 tryptophan synthase alpha chain compare
PP_0421 -4.0 -8.2 Anthranilate phosphoribosyltransferase compare
PP_0083 -4.0 -2.8 tryptophan synthase beta chain compare
PP_4699 -3.6 -5.9 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PP_5104 -3.6 -9.4 thiazole synthase compare
PP_4696 -3.5 -5.4 Nitrogen regulation protein NR(I) compare
PP_5128 -3.5 -6.4 Dihydroxy-acid dehydratase compare
PP_0735 -3.3 -1.8 molybdopterin-synthase adenylyltransferase compare
PP_4984 -3.3 -15.5 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
PP_0366 -3.3 -10.0 dethiobiotin synthetase compare
PP_0339 -3.2 -5.4 Pyruvate dehydrogenase E1 component compare
PP_0362 -3.2 -12.8 Biotin synthase compare
PP_2000 -3.2 -2.2 amidophosphoribosyl transferase compare
PP_5014 -3.1 -3.7 Phosphoribosyl-AMP cyclohydrolase compare
PP_2168 -3.1 -12.6 Transaldolase compare
PP_1362 -3.0 -4.1 pyruvate kinase II compare
PP_4922 -3.0 -15.8 Phosphomethylpyrimidine synthase compare
PP_1233 -3.0 -9.7 sulfurtransferase compare
PP_5095 -3.0 -9.0 pyrroline-5-carboxylate reductase compare
PP_0164 -3.0 -11.5 conserved protein of unknown function compare
PP_1025 -2.9 -8.8 2-isopropylmalate synthase compare
PP_0127 -2.9 -8.6 Thiol:disulfide interchange protein compare
PP_0363 -2.9 -12.1 8-amino-7-oxononanoate synthase compare
PP_0364 -2.9 -11.0 pimeloyl-[acp] methyl ester esterase compare
PP_4782 -2.7 -8.4 Phosphomethylpyrimidine kinase compare
PP_2414 -2.7 -3.1 conserved exported protein of unknown function compare
PP_0365 -2.7 -10.6 Malonyl-[acyl-carrier protein] O-methyltransferase compare
PP_0291 -2.7 -3.6 conserved protein of unknown function compare
PP_2328 -2.6 -7.7 Phosphoadenosine phosphosulfate reductase compare
PP_5350 -2.5 -6.0 Transcriptional regulator, RpiR family compare
PP_2370 -2.4 -3.1 conserved protein of unknown function compare
PP_1215 -2.2 -1.6 Crossover junction endodeoxyribonuclease RuvC compare
PP_1348 -2.2 -5.9 putative MutT/nudix family protein/thiamine-phosphate pyrophosphorylase compare
PP_1664 -2.1 -6.8 phosphoribosylglycinamide formyltransferase 1 compare
PP_0809 -2.1 -9.8 disulfide bond formation protein B compare
PP_3790 -2.1 -11.3 diaminopimelate epimerase compare
PP_5110 -2.1 -1.4 cytokinetic ring ABC transporter-like subunit - ATP-binding subunit compare
PP_1912 -2.0 -8.2 Phosphate acyltransferase compare
PP_1022 -2.0 -3.9 glucose 6-phosphate-1-dehydrogenase compare
PP_0087 -2.0 -2.4 conserved exported protein of unknown function compare
PP_4517 -2.0 -2.0 conserved protein of unknown function compare
PP_4910 -2.0 -1.3 conserved protein of unknown function compare
PP_2031 -1.9 -1.7 conserved protein of unknown function compare
PP_0022 -1.9 -1.0 hypothetical protein compare
PP_1410 -1.9 -1.7 conserved protein of unknown function compare
PP_3946 -1.8 -1.7 HTH-type transcriptional repressor NicR compare
PP_2439 -1.8 -1.7 peroxiredoxin, alkylhydroperoxide reductase - small subunit compare
PP_3417 -1.8 -6.7 D-gluconate transporter compare
PP_1426 -1.8 -10.3 L-aspartate oxidase compare
PP_4004 -1.7 -4.2 DNA translocase FtsK compare
PP_0250 -1.7 -1.9 heat shock protein Hsp15 involved in ribosome recycling compare
PP_2378 -1.7 -3.7 Fe/S biogenesis protein NfuA compare
PP_1493 -1.7 -3.4 chemotaxis response regulator protein-glutamate methylesterase of group 3 operon compare
PP_0001 -1.7 -1.1 probable chromosome-partitioning protein compare
PP_2302 -1.6 -6.0 DNA-binding, ATP-dependent protease compare
PP_0513 -1.6 -1.1 DNA-binding transcriptional repressor NrdR-Zn2+-ATP/dATP compare
PP_5227 -1.6 -7.5 diaminopimelate decarboxylase compare
PP_2087 -1.5 -2.2 CmpX protein compare
PP_2107 -1.5 -1.4 conserved protein of unknown function compare
PP_1216 -1.5 -1.0 Holliday junction ATP-dependent DNA helicase RuvA compare
PP_2388 -1.5 -4.2 Transporter, LysE family compare
PP_3359 -1.4 -1.9 putative Hydroxycinnamic acid degradation regulator compare
PP_5508 -1.4 -0.9 conserved protein of unknown function compare
PP_2402 -1.4 -1.8 putative Sensor histidine kinase compare
PP_0065 -1.4 -2.5 NAD-binding component of TrK potassium transporter compare
PP_5022 -1.4 -1.3 Glutamine transport ATP-binding protein GlnQ compare
PP_5331 -1.4 -3.7 Long-chain acyl-CoA thioester hydrolase compare
PP_4342 -1.4 -2.5 flagellar synthesis regulator, putative ATPase compare
PP_2864 -1.4 -1.7 conserved protein of unknown function compare
PP_2337 -1.3 -2.2 aconitate isomerase compare
PP_0833 -1.3 -1.8 queuine tRNA-ribosyltransferase compare
PP_4504 -1.3 -1.5 conserved exported protein of unknown function compare
PP_0888 -1.3 -2.0 Photosynthetic apparatus regulatory protein RegA compare
PP_4828 -1.3 -1.3 Precorrin-8X methylmutase compare
PP_3481 -1.2 -1.6 conserved exported protein of unknown function compare
PP_1186 -1.2 -1.7 two component system DNA-binding transcriptional dual regulator compare
PP_2847 -1.2 -1.2 Urease accessory protein UreJ compare
PP_1468 -1.2 -2.1 Tyrosine recombinase XerD compare
PP_3411 -1.2 -1.6 conserved protein of unknown function compare
PP_5309 -1.2 -0.8 oxidative and nitrosative stress transcriptional dual regulator compare
PP_4098 -1.2 -0.8 UvrABC system protein C compare
PP_4684 -1.1 -5.1 conserved protein of unknown function with kinase-like domain compare
PP_0086 -1.1 -1.9 conserved protein of unknown function compare
PP_4130 -1.1 -3.9 NADH:ubiquinone oxidoreductase, membrane subunit M compare
PP_3484 -1.1 -2.5 Response regulator receiver protein compare
PP_4993 -1.1 -3.0 Glutathione synthetase compare
PP_2336 -1.1 -2.3 aconitate hydratase 1 compare
PP_3522 -1.1 -2.1 conserved protein of unknown function compare
PP_4879 -1.1 -2.0 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB compare
PP_5216 -1.1 -2.1 exopolyphosphatase compare
PP_1589 -1.1 -7.3 uridylyltransferase compare
PP_0117 -1.1 -3.3 Zn(2+) ABC transporter - permease subunit compare
PP_4122 -1.1 -1.9 proton-pumping NADH:ubiquinone oxidoreductase, respiratory complex I, subunit E compare
PP_1004 -1.1 -1.8 conserved protein of unknown function compare
PP_0393 -1.0 -0.7 putative 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase compare
PP_0122 -1.0 -2.9 conserved exported protein of unknown function compare
PP_4943 -1.0 -1.5 putative Glycosyl transferase compare
PP_3649 -1.0 -1.2 Transcriptional regulator, GntR family compare
PP_1038 -1.0 -0.9 conserved protein of unknown function compare
PP_0508 -1.0 -2.2 conserved exported protein of unknown function compare
PP_3880 -1.0 -1.0 conserved exported protein of unknown function compare
PP_4793 -1.0 -1.5 conserved protein of unknown function compare
PP_2581 -1.0 -1.0 conserved protein of unknown function compare
PP_4870 -1.0 -2.0 Azurin compare
PP_4848 -1.0 -2.3 Curved DNA-binding protein compare
PP_3637 -1.0 -2.8 putative Sulfonate ABC transporter, ATP-binding protein compare
PP_4720 -1.0 -1.1 putative RNA binding protein compare
PP_1654 -1.0 -2.6 cysteine synthase B compare
PP_1366 -1.0 -2.1 Transcriptional regulator MvaT, P16 subunit compare
PP_1304 -1.0 -4.6 sulfate adenylyltransferase subunit 1/adenylyl-sulfate kinase compare
PP_0856 -1.0 -2.8 conserved lipoprotein of unknown function compare
PP_1553 -0.9 -1.5 conserved protein of unknown function compare
PP_0381 -0.9 -5.2 Coenzyme PQQ synthesis protein F compare
PP_4701 -0.9 -0.6 glucose-6-phosphate isomerase compare
PP_4121 -0.9 -1.5 NADH-quinone oxidoreductase subunit C/D compare
PP_3443 -0.9 -5.9 putative glyceraldehyde-3-phosphate dehydrogenase compare
PP_0377 -0.9 -1.2 coenzyme PQQ synthesis protein D compare
PP_1214 -0.9 -1.2 putative transcriptional regulatory protein compare
PP_1063 -0.9 -5.4 DNA-binding transcriptional regulator, homocysteine-binding compare
PP_0261 -0.9 -3.0 adenosine-3'(2'),5'-bisphosphate nucleotidase compare
PP_4471 -0.9 -3.0 Magnesium transporter compare
PP_4726 -0.9 -1.9 Chaperone protein DnaJ compare
PP_0376 -0.9 -5.4 Coenzyme PQQ synthesis protein E compare
PP_1994 -0.9 -1.6 tRNA pseudouridine (38-40)synthase compare
PP_2390 -0.9 -3.3 Transcriptional regulator, LysR family compare
PP_4804 -0.9 -2.9 RlpA-like lipoprotein compare
PP_4265 -0.9 -1.5 DNA-binding transcriptional dual regulator compare
PP_4546 -0.9 -2.4 ATP-dependent helicase HrpA compare
PP_5610 -0.9 -0.8 protein of unknown function compare
PP_1217 -0.9 -1.6 Holliday junction ATP-dependent DNA helicase RuvB compare
PP_5617 -0.9 -2.3 conserved protein of unknown function compare
PP_4500 -0.9 -2.7 TrpH family protein compare
PP_4829 -0.8 -1.8 putative precorrin-3B synthase compare
PP_1783 -0.8 -0.9 dTDP-glucose pyrophosphorylase compare
PP_5168 -0.8 -1.1 sulfate/thiosulfate import ATP-binding protein compare
PP_1548 -0.8 -1.6 conserved protein of unknown function compare
PP_2030 -0.8 -2.8 conserved protein of unknown function compare
PP_1536 -0.8 -1.4 conserved protein of unknown function compare
PP_4880 -0.8 -3.3 exoribonuclease R compare
PP_5007 -0.8 -1.6 Polyhydroxyalkanoate granule-associated protein GA2 compare
PP_5338 -0.8 -1.4 aspartate ammonia-lyase compare
PP_5701 -0.8 -1.2 conserved protein of unknown function compare
PP_3821 -0.8 -5.1 UTP-glucose-1-phosphate uridylyltransferase compare
PP_4226 -0.8 -2.3 conserved protein of unknown function compare
PP_4940 -0.8 -3.4 Putative glycosyltransferase compare
PP_1303 -0.8 -4.1 Sulfate adenylyltransferase subunit 2 compare
PP_1439 -0.8 -1.2 conserved exported protein of unknown function compare
PP_3789 -0.8 -3.4 putative Efflux transporter compare
PP_3248 -0.8 -0.5 Dyp-type peroxidase family protein compare
PP_5456 -0.8 -0.6 conserved protein of unknown function compare
PP_2597 -0.8 -2.9 conserved protein of unknown function compare
PP_5121 -0.8 -1.8 conserved exported protein of unknown function compare
PP_4507 -0.8 -5.3 potassium transporter compare
PP_0963 -0.8 -1.2 putative BolA family protein compare
PP_5248 -0.8 -0.7 putative hydrolase compare


Specific Phenotypes

None in this experiment

For Pseudomonas putida KT2440 in pH experiments

For pH D-Glucose across organisms