Experiment set39IT063 for Pseudomonas putida KT2440

Compare to:

D-Glucose carbon source pH 7

200 most detrimental genes:

  gene name fitness t score description  
PP_1650 +1.6 12.9 Sensor protein GacS compare
PP_4099 +1.5 13.4 two-componenent system BarA/UvrY - regulatory subunit compare
PP_0593 +1.4 1.6 putative ribosome-binding factor compare
PP_5145 +1.2 11.5 phosphoenolpyruvate-dependent regulator (with NPR and NTR proteins) compare
PP_3487 +1.2 1.7 conserved exported protein of unknown function compare
PP_5093 +1.1 1.0 twitching motility protein compare
PP_0948 +1.1 4.5 Phosphocarrier protein HPr compare
PP_5017 +1.1 1.9 Sec-independent protein translocase protein TatB compare
PP_2889 +1.1 6.1 putative Transmembrane regulator PrtR compare
PP_2999 +1.1 1.0 Glyoxalase family protein compare
PP_0306 +1.0 2.9 conserved protein of unknown function compare
PP_4171 +1.0 7.7 conserved exported protein of unknown function compare
PP_1445 +0.9 5.4 carbohydrate-selective porin compare
PP_2880 +0.9 1.5 Transcriptional regulator, TetR family compare
PP_1322 +0.9 1.5 putative Lipoprotein compare
PP_4247 +0.9 1.4 Exonuclease compare
PP_4847 +0.9 1.5 chaperone modulatory of CbpA co-chaperone protein compare
PP_1473 +0.8 3.6 conserved protein of unknown function compare
PP_0307 +0.8 2.0 conserved exported protein of unknown function compare
PP_1568 +0.8 1.1 conserved protein of unknown function compare
PP_5528 +0.8 1.7 conserved protein of unknown function compare
PP_0313 +0.8 1.7 putative electron transfer flavoprotein beta subunit compare
PP_2816 +0.8 2.2 putative Transcriptional regulator NfxB compare
PP_5558 +0.8 2.1 putative transcriptional xre family of phage origin compare
PP_0852 +0.8 2.4 Transcriptional regulator, Cro/CI family compare
PP_3043 +0.8 1.1 conserved protein of unknown function compare
PP_1153 +0.7 1.8 putative lipoprotein compare
PP_5202 +0.7 1.0 putative cell division protein compare
PP_1122 +0.7 1.5 OmpA family protein compare
PP_0874 +0.7 1.0 conserved protein of unknown function compare
PP_4778 +0.7 2.3 23S rRNA pseudouridine 2457 synthase compare
PP_2878 +0.7 1.1 conserved protein of unknown function compare
PP_5705 +0.7 1.6 protein of unknown function compare
PP_4581 +0.7 1.5 putative amidotransferase compare
PP_5274 +0.7 1.5 conserved protein of unknown function compare
PP_5198 +0.7 1.9 conserved protein of unknown function compare
PP_5359 +0.7 1.6 CobW/P47K family protein compare
PP_0962 +0.7 1.8 toluene-tolerance protein compare
PP_1655 +0.7 4.6 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD compare
PP_2189 +0.7 2.0 conserved protein of unknown function compare
PP_4642 +0.7 0.6 Cyclic diguanosine monophosphate-binding protein compare
PP_2387 +0.6 1.6 conserved protein of unknown function compare
PP_2882 +0.6 2.3 putative 2-hydroxychromene-2-carboxylate isomerase compare
PP_4789 +0.6 2.3 heat shock protein, Co2+ and Mg2+ efflux protein compare
PP_4874 +0.6 0.8 50S ribosomal protein L9 compare
PP_0232 +0.6 0.7 ATP-binding taurine transporter subunit compare
PP_2819 +0.6 2.5 Outer membrane protein OprJ compare
PP_2972 +0.6 2.0 conserved protein of unknown function compare
PP_1008 +0.6 1.1 RNA polymerase subunit sigma-24 compare
PP_1113 +0.6 4.3 Pyridoxal-phosphate dependent enzyme family protein compare
PP_1381 +0.6 1.6 4-carboxymuconolactone decarboxylase compare
PP_4419 +0.6 1.6 transposase compare
PP_5658 +0.6 2.4 protein of unknown function compare
PP_2214 +0.6 2.3 3-hydroxyacyl-CoA dehydrogenase type-2 compare
PP_1062 +0.6 1.5 MutT/nudix family protein compare
PP_3365 +0.6 0.7 Acetolactate synthase compare
PP_3294 +0.6 1.8 Universal stress protein family compare
PP_4593 +0.6 0.5 conserved protein of unknown function compare
PP_2397 +0.6 2.0 EF hand domain protein compare
PP_5191 +0.6 1.7 conserved exported protein of unknown function compare
PP_0440 +0.6 2.4 Elongation factor Tu-A compare
PP_5053 +0.6 2.5 Protein-export protein SecB compare
PP_4199 +0.6 0.8 putative Lipoprotein compare
PP_2863 +0.5 1.6 conserved membrane protein of unknown function compare
PP_2243 +0.5 1.8 conserved protein of unknown function compare
PP_4845 +0.5 1.2 putative Urea ABC transporter, ATP-binding protein compare
PP_2457 +0.5 2.8 DNA-binding transcriptional repressor compare
PP_3874 +0.5 0.9 conserved protein of unknown function compare
PP_4994 +0.5 2.7 conserved protein of unknown function compare
PP_3018 +0.5 2.6 conserved protein of unknown function compare
PP_3477 +0.5 2.2 Putative secretion type II protein related to protein G compare
PP_2306 +0.5 1.1 conserved exported protein of unknown function compare
PP_0305 +0.5 1.9 HTH-type transcriptional regulator CdhR compare
PP_2798 +0.5 1.8 putative Oxidoreductase compare
PP_1812 +0.5 2.0 conserved protein of unknown function compare
PP_2403 +0.5 0.7 Chemotaxis protein CheY compare
PP_1716 +0.5 1.2 Transcriptional regulator, Cro/CI family compare
PP_2836 +0.5 1.8 putative 2-keto-3-deoxyxylonate dehydratase compare
PP_0240 +0.5 1.2 Aliphatic sulfonates import ATP-binding protein SsuB compare
PP_0211 +0.5 1.7 conserved protein of unknown function compare
PP_2360 +0.5 2.4 putative type 1 pili subunit CsuA/B protein compare
PP_4705 +0.5 1.9 Glyoxalase compare
PP_3051 +0.5 1.3 Pyocin R2_PP, tail spike protein compare
PP_2054 +0.5 2.1 putative DNA-binding transcriptional regulator compare
PP_5473 +0.5 1.2 putative transcriptional regulator, LuxR family compare
PP_4406 +0.5 1.3 conserved protein of unknown function compare
PP_4989 +0.5 1.3 Protein PilJ compare
PP_2159 +0.5 1.4 Copper-binding protein, plastocyanin/azurin family compare
PP_5430 +0.5 2.3 protein of unknown function compare
PP_1397 +0.5 2.2 conserved protein of unknown function compare
PP_5730 +0.5 1.5 conserved protein of unknown function compare
PP_2672 +0.5 1.6 Transcriptional activator protein ExaE compare
PP_5038 +0.5 1.2 conserved lipoprotein of unknown function compare
PP_1344 +0.5 0.8 conserved protein of unknown function compare
PP_2511 +0.5 1.2 conserved protein of unknown function compare
PP_4452 +0.5 1.6 NAD/NADP octopine/nopaline dehydrogenase family protein compare
PP_5449 +0.5 1.9 conserved exported protein of unknown function compare
PP_0198 +0.5 1.9 putative transporter compare
PP_3312 +0.5 1.4 putative Heat shock protein compare
PP_3643 +0.5 1.2 putative Oxidoreductase compare
PP_4797 +0.5 0.9 conserved protein of unknown function compare
PP_5475 +0.5 1.2 conserved protein of unknown function compare
PP_0058 +0.5 4.1 putative 1-acyl-sn-glycerol-3-phosphate acyltransferase compare
PP_1646 +0.5 1.8 putative Thioredoxin compare
PP_0794 +0.5 1.5 1-phosphofructokinase monomer compare
PP_1055 +0.5 0.4 Type II secretion pathway protein GspN compare
PP_1824 +0.4 0.9 Smr domain protein compare
PP_1898 +0.4 2.0 MotA/TolQ/ExbB proton channel family protein compare
PP_0750 +0.4 1.6 conserved protein of unknown function compare
PP_0246 +0.4 1.1 two-component system DNA-binding response transcriptional dual regulator compare
PP_3398 +0.4 0.7 putative Curli fiber surface-exposed nucleator CsgB compare
PP_2650 +0.4 1.2 putative 4-hydroxybutyrate dehydrogenase compare
PP_0827 +0.4 1.7 putative phosphonate transport system permease protein PtxC compare
PP_3610 +0.4 1.9 conserved protein of unknown function compare
PP_3025 +0.4 2.1 Transporter, LysE family compare
PP_0574 +0.4 3.1 DNA-binding response regulator, LuxR family compare
PP_4953 +0.4 1.4 putative oxidoreductase with FAD/NAD(P)-binding domain compare
PP_0345 +0.4 2.1 putative Heptose kinase WapP compare
PP_1390 +0.4 1.4 conserved exported protein of unknown function compare
PP_5232 +0.4 0.6 conserved protein of unknown function compare
PP_0797 +0.4 2.5 conserved protein of unknown function compare
PP_1736 +0.4 1.1 conserved protein of unknown function compare
PP_0321 +0.4 2.3 low specificity L-threonine aldolase compare
PP_1317 +0.4 1.6 Ubiquinol-cytochrome c reductase iron-sulfur subunit compare
PP_4946 +0.4 2.1 sodium/L-proline transporter compare
PP_1112 +0.4 2.1 conserved membrane protein of unknown function compare
PP_2256 +0.4 1.3 Transcriptional regulator, Cro/CI family compare
PP_3810 +0.4 0.8 conserved protein of unknown function compare
PP_5546 +0.4 0.8 conserved protein of unknown function compare
PP_3715 +0.4 1.2 Muconate cycloisomerase 1 compare
PP_3164 +0.4 1.5 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase compare
PP_3831 +0.4 1.8 conserved protein of unknown function compare
PP_1096 +0.4 1.7 putative electron transport complex protein compare
PP_1178 +0.4 2.0 conserved protein of unknown function compare
PP_0236 +0.4 1.0 NAD(P)H-dependent FMN reductase subunit compare
PP_2723 +0.4 1.1 Uncharacterized oxidoreductase YhdF compare
PP_2881 +0.4 2.4 Oxidoreductase, short chain dehydrogenase/reductase family compare
PP_2172 +0.4 1.6 conserved exported protein of unknown function compare
PP_5027 +0.4 1.2 D-tyrosyl-tRNA(Tyr) deacylase compare
PP_2683 +0.4 2.0 putative sensory box histidine kinase/response regulator compare
PP_2029 +0.4 0.8 von Willebrand factor type A domain protein compare
PP_4982 +0.4 1.3 putative cytochrome b561, iron-regulated compare
PP_2176 +0.4 2.2 transcriptional regulator, LysR family compare
PP_4273 +0.4 0.5 Transcriptional regulator, MerR family compare
PP_4710 +0.4 2.8 tRNA pseudouridine 55 synthase compare
PP_0891 +0.4 0.9 conserved exported protein of unknown function compare
PP_2580 +0.4 1.0 conserved protein of unknown function compare
PP_3197 +0.4 1.0 Glyoxalase family protein compare
PP_4814 +0.4 0.9 ATP-dependent protease La domain protein compare
PP_0893 +0.4 1.3 ThiJ/PfpI family protein compare
PP_1324 +0.4 1.8 putative endonuclease distantly related to archaeal Holliday junction resolvase compare
PP_0865 +0.4 2.1 ECF subfamily RNA polymerase sigma-24 factor compare
PP_4785 +0.4 1.6 conserved exported protein of unknown function compare
PP_0432 +0.4 1.5 N-acetyl-gamma-glutamyl-phosphate reductase 1 compare
PP_4413 +0.4 2.2 conserved protein of unknown function compare
PP_4721 +0.4 1.9 conserved membrane protein of unknown function compare
PP_5742 +0.4 1.7 putative membrane protein of unknown function compare
PP_t10 +0.4 0.5 tRNA-Pro compare
PP_2781 +0.4 1.9 putative beta-ketoacyl synthase compare
PP_3551 +0.4 0.4 DNA-binding response regulator, LuxR family compare
PP_4296 +0.4 0.6 conserved exported protein of unknown function compare
PP_1269 +0.4 0.3 Universal stress protein family compare
PP_1293 +0.4 0.5 molybdopterin synthase small subunit compare
PP_4139 +0.4 1.7 conserved protein of unknown function compare
PP_3083 +0.4 1.5 putative Membrane protein compare
PP_4986 +0.4 1.7 Channel protein, hemolysin III family compare
PP_0886 +0.4 1.2 conserved exported protein of unknown function compare
PP_1099 +0.4 0.5 Cold shock protein CapB compare
PP_2573 +0.4 2.4 conserved protein of unknown function compare
PP_4136 +0.4 0.3 Transcriptional regulator, LuxR family compare
PP_5686 +0.4 0.9 protein of unknown function compare
PP_0222 +0.4 2.4 Monooxygenase, DszA family compare
PP_3144 +0.4 1.7 L-serine dehydratase compare
PP_1150 +0.4 1.9 putative Membrane protein compare
PP_2824 +0.4 0.8 Transcriptional regulator, TetR family compare
PP_2776 +0.4 1.5 Homocysteine S-methyltransferase family protein compare
PP_2575 +0.4 0.5 conserved exported protein of unknown function compare
PP_5253 +0.4 1.0 Arylesterase compare
PP_1938 +0.4 0.9 conserved protein of unknown function compare
PP_1909 +0.4 1.2 putative septum formation protein compare
PP_t49 +0.4 0.9 tRNA-Met compare
PP_3328 +0.4 0.9 putative Ring-cleaving dioxygenase compare
PP_4373 +0.4 2.8 Transcriptional regulator FleQ compare
PP_5647 +0.4 1.9 conserved protein of unknown function compare
PP_5543 +0.4 2.1 protein of unknown function compare
PP_0158 +0.4 2.2 glutaryl-CoA dehydrogenase compare
PP_2225 +0.3 1.1 putative Multicomponent potassium-proton antiporter, subunit G compare
PP_1718 +0.3 1.7 putative diguanylate phosphodiesterase containing EAL domain compare
PP_2009 +0.3 1.6 putative 1-aminocyclopropane-1-carboxylate deaminase compare
PP_2665 +0.3 1.5 Glycerol metabolism activator compare
PP_5472 +0.3 1.5 conserved exported protein of unknown function compare
PP_5659 +0.3 1.1 protein of unknown function compare
PP_3207 +0.3 1.7 putative Cyclase compare
PP_0163 +0.3 2.6 putative transcriptional regulator compare
PP_5603 +0.3 1.9 putative FAD dependent oxidoreductase compare
PP_0711 +0.3 1.1 putative hydrolase compare
PP_4833 +0.3 1.3 SURF1 domain protein compare
PP_4133 +0.3 1.0 Transcriptional regulator-related protein compare
PP_5315 +0.3 0.7 Rubredoxin-1 compare
PP_5183 +0.3 1.6 glutamylpolyamine synthetase compare


Specific Phenotypes

None in this experiment

For Pseudomonas putida KT2440 in pH experiments

For pH D-Glucose across organisms