Experiment set39IT062 for Pseudomonas putida KT2440

Compare to:

Valerolactone carbon source pH 6.5

200 most important genes:

  gene name fitness t score description  
PP_0293 -5.3 -3.7 Imidazole glycerol phosphate synthase subunit HisF compare
PP_3821 -4.9 -5.9 UTP-glucose-1-phosphate uridylyltransferase compare
PP_1995 -4.2 -2.9 N-(5'-phosphoribosyl)anthranilate isomerase compare
PP_1079 -3.6 -4.3 Ornithine carbamoyltransferase compare
PP_0417 -3.4 -11.3 Anthranilate synthase component 1 compare
PP_4700 -3.3 -2.3 pantothenate synthetase compare
PP_0967 -3.3 -5.9 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_0420 -3.3 -7.3 aminodeoxychorismate synthase / para-aminobenzoate synthase multi-enzyme complex compare
PP_4364 -3.3 -3.9 putative Anti-sigma F factor antagonist compare
PP_1988 -3.2 -5.8 3-isopropylmalate dehydrogenase compare
PP_1328 -3.2 -2.2 Protein MraZ compare
PP_0966 -3.2 -7.1 Histidinol dehydrogenase compare
PP_5661 -3.1 -3.0 putative lipoprotein compare
PP_2433 -3.0 -2.0 conserved protein of unknown function compare
PP_3365 -3.0 -1.2 Acetolactate synthase compare
PP_4724 -3.0 -16.7 Carbamoyl-phosphate synthase small chain compare
PP_3511 -3.0 -7.4 Branched-chain-amino-acid aminotransferase compare
PP_0422 -2.9 -5.1 Indole-3-glycerol phosphate synthase compare
PP_0250 -2.9 -1.9 heat shock protein Hsp15 involved in ribosome recycling compare
PP_4723 -2.8 -20.0 Carbamoyl-phosphate synthase large chain compare
PP_1683 -2.8 -1.9 Transcriptional regulator, MarR family compare
PP_1986 -2.8 -1.9 3-isopropylmalate dehydratase small subunit compare
PP_5185 -2.8 -3.8 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_5097 -2.7 -8.9 homoserine O-acetyltransferase compare
PP_0691 -2.7 -10.3 Glutamate 5-kinase compare
PP_5095 -2.7 -6.5 pyrroline-5-carboxylate reductase compare
PP_0421 -2.7 -5.8 Anthranilate phosphoribosyltransferase compare
PP_0356 -2.7 -4.8 malate synthase G compare
PP_4116 -2.6 -9.8 isocitrate lyase compare
PP_1088 -2.6 -10.0 Argininosuccinate synthase compare
PP_4999 -2.6 -2.8 dihydroorotase-like protein compare
PP_4678 -2.5 -8.9 Ketol-acid reductoisomerase compare
PP_5508 -2.5 -1.0 conserved protein of unknown function compare
PP_0289 -2.5 -6.0 Imidazoleglycerol-phosphate dehydratase compare
PP_0965 -2.5 -8.5 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_1826 -2.5 -1.7 Hydrolase, isochorismatase family compare
PP_2168 -2.4 -8.5 Transaldolase compare
PP_5098 -2.4 -5.2 methionine biosynthesis protein MetW compare
PP_4680 -2.4 -7.9 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_1778 -2.4 -2.9 Lipopolysaccharide ABC export system, permease protein compare
PP_0164 -2.4 -5.1 conserved protein of unknown function compare
PP_4679 -2.4 -2.3 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_4470 -2.4 -4.1 putative transcriptional regulator (Arc domain-containing) compare
PP_3541 -2.3 -2.0 Transporter, MgtC family compare
PP_4940 -2.3 -2.7 Putative glycosyltransferase compare
PP_3241 -2.3 -0.9 conserved exported protein of unknown function compare
PP_3519 -2.2 -0.9 putative Lipoprotein compare
PP_2217 -2.2 -3.3 enoyl-CoA hydratase compare
PP_5659 -2.2 -2.6 protein of unknown function compare
PP_4005 -2.2 -2.3 Leucyl/phenylalanyl-tRNA--protein transferase compare
PP_2910 -2.2 -6.1 L-2-hydroxyglutarate oxidase compare
PP_4696 -2.2 -2.1 Nitrogen regulation protein NR(I) compare
PP_0406 -2.1 -7.2 Nucleotidyltransferase family protein compare
PP_4695 -2.1 -8.2 Sensory box histidine kinase compare
PP_2354 -2.1 -8.8 Sensory box histidine kinase/response regulator compare
PP_0735 -2.1 -1.2 molybdopterin-synthase adenylyltransferase compare
PP_5289 -2.1 -2.5 Acetylglutamate kinase compare
PP_0787 -2.1 -3.2 quinolinate phosphoribosyltransferase (decarboxylating) monomer compare
PP_2868 -2.1 -5.6 Transcriptional regulator, Cro/CI family compare
PP_4720 -2.1 -1.4 putative RNA binding protein compare
PP_4268 -2.0 -1.1 nucleoid-associated broad specificity regulator compare
PP_3806 -2.0 -2.0 Hydrolase, isochorismatase family compare
PP_0834 -2.0 -2.0 Sec translocation complex subunit YajC compare
PP_0185 -2.0 -6.6 Positive alginate biosynthesis regulatory protein compare
PP_0292 -2.0 -3.0 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_4699 -2.0 -2.3 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PP_4227 -2.0 -1.6 conserved protein of unknown function compare
PP_4701 -2.0 -0.8 glucose-6-phosphate isomerase compare
PP_5229 -1.9 -2.3 conserved protein of unknown function compare
PP_0290 -1.9 -4.0 Imidazole glycerol phosphate synthase subunit HisH compare
PP_0083 -1.9 -1.3 tryptophan synthase beta chain compare
PP_2327 -1.9 -5.5 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_4143 -1.9 -4.2 conserved protein of unknown function compare
PP_5748 -1.9 -1.8 cytochrome c heme lyase subunit compare
PP_5128 -1.9 -5.3 Dihydroxy-acid dehydratase compare
PP_3999 -1.9 -4.6 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_0184 -1.9 -2.3 Argininosuccinate lyase compare
PP_3411 -1.9 -1.4 conserved protein of unknown function compare
PP_1430 -1.9 -6.1 putative periplasmic serine endoprotease DegP-like compare
PP_1985 -1.9 -2.3 3-isopropylmalate dehydratase large subunit compare
PP_2409 -1.9 -2.2 cobalt-zinc-cadmium resistance protein compare
PP_2530 -1.8 -1.2 conserved protein of unknown function compare
PP_2848 -1.8 -3.0 urease accessory protein compare
PP_1142 -1.8 -1.3 conserved protein of unknown function compare
PP_4994 -1.8 -4.1 conserved protein of unknown function compare
PP_5015 -1.8 -3.2 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PP_4073 -1.8 -1.1 conserved exported protein of unknown function compare
PP_5075 -1.8 -8.6 glutamate synthase (NADPH) beta subunit compare
PP_1860 -1.8 -4.9 Organic hydroperoxide resistance transcriptional regulator compare
PP_2001 -1.8 -6.7 O-succinylhomoserine sulfhydrylase compare
PP_4642 -1.7 -0.7 Cyclic diguanosine monophosphate-binding protein compare
PP_5161 -1.7 -5.0 putative lysophospholipase compare
PP_4199 -1.7 -1.0 putative Lipoprotein compare
PP_0082 -1.7 -1.7 tryptophan synthase alpha chain compare
PP_4058 -1.7 -7.5 1,4-alpha-glucan branching enzyme compare
PP_2403 -1.7 -1.0 Chemotaxis protein CheY compare
PP_1025 -1.7 -7.5 2-isopropylmalate synthase compare
PP_1404 -1.7 -3.2 conserved protein of unknown function compare
PP_4890 -1.7 -2.4 ATP phosphoribosyltransferase regulatory subunit compare
PP_2677 -1.6 -2.4 conserved exported protein of unknown function compare
PP_0435 -1.6 -12.0 Peptidase, M23/M37 family compare
PP_4223 -1.6 -1.9 diaminobutyrate-2-oxoglutarate transaminase compare
PP_1780 -1.6 -12.0 putative mannosyltransferase compare
PP_1355 -1.6 -13.5 Muropeptide permease AmpG compare
PP_0405 -1.6 -11.8 conserved protein of unknown function compare
PP_2137 -1.6 -2.4 beta-ketoadipyl CoA thiolase, beta component compare
PP_2675 -1.6 -3.5 Cytochrome c-type protein compare
PP_2356 -1.6 -6.6 putative Phytochrome family protein compare
PP_2371 -1.6 -3.6 Sulphite reductase hemoprotein, beta subunit compare
PP_2575 -1.6 -1.1 conserved exported protein of unknown function compare
PP_5487 -1.6 -2.1 conserved protein of unknown function compare
PP_t29 -1.6 -1.1 tRNA-Ala compare
PP_2568 -1.5 -0.9 Ring-cleaving dioxygenase compare
PP_1779 -1.5 -1.5 Lipopolysaccharide ABC export system, ATP-binding protein compare
PP_1623 -1.5 -4.3 RNA polymerase, sigma S (sigma 38) factor compare
PP_0683 -1.5 -1.8 conserved protein of unknown function compare
PP_3237 -1.5 -2.5 Universal stress protein family compare
PP_1719 -1.5 -7.1 Tail-specific protease prc compare
PP_5204 -1.5 -1.8 conserved protein of unknown function compare
PP_1293 -1.5 -0.9 molybdopterin synthase small subunit compare
PP_0381 -1.5 -4.8 Coenzyme PQQ synthesis protein F compare
PP_2820 -1.5 -2.5 HTH-type transcriptional regulator nfxB compare
PP_0379 -1.5 -4.5 Coenzyme PQQ synthesis protein B compare
PP_4681 -1.5 -1.4 conserved protein of unknown function compare
PP_1598 -1.5 -3.0 regulatory intramembrane protein RIP zinc protease compare
PP_2592 -1.5 -2.0 Ferric siderophore ABC transporter, ATP-binding protein compare
PP_1402 -1.5 -5.6 C4-dicarboxylate transport sensor protein compare
PP_1387 -1.5 -3.1 Probable HTH-type transcriptional regulator TtgR compare
PP_0794 -1.4 -2.2 1-phosphofructokinase monomer compare
PP_4532 -1.4 -2.5 ATP-dependent DEAD-box RNA helicase require for 50S ribosomal subunit biogenesis compare
PP_2809 -1.4 -3.2 conserved membrane protein of unknown function compare
PP_5146 -1.4 -4.6 RNA pyrophosphohydrolase compare
PP_4909 -1.4 -5.5 phosphoserine phosphatase compare
PP_4060 -1.4 -7.8 Alpha-1,4-glucan:maltose-1-phosphate maltosyltransferase compare
PP_5359 -1.4 -1.0 CobW/P47K family protein compare
PP_1109 -1.4 -7.5 Transcriptional regulator, GntR family compare
PP_t12 -1.4 -0.6 tRNA-Thr compare
PP_1799 -1.4 -9.6 GDP-mannose 4,6-dehydratase compare
PP_0434 -1.4 -8.1 Anhydro-N-acetylmuramic acid kinase compare
PP_4009 -1.4 -3.1 ATP-dependent Clp protease adapter protein ClpS compare
PP_1317 -1.3 -3.9 Ubiquinol-cytochrome c reductase iron-sulfur subunit compare
PP_5201 -1.3 -0.9 conserved protein of unknown function, UPF0149 family compare
PP_1493 -1.3 -2.2 chemotaxis response regulator protein-glutamate methylesterase of group 3 operon compare
PP_1454 -1.3 -2.7 conserved protein of unknown function compare
PP_1491 -1.3 -4.0 CheW domain protein compare
PP_0127 -1.3 -4.0 Thiol:disulfide interchange protein compare
PP_2145 -1.3 -5.7 beta-N-acetylglucosaminidase compare
PP_4528 -1.3 -0.7 conserved protein of unknown function compare
PP_0152 -1.3 -1.2 conserved exported protein of unknown function compare
PP_0585 -1.3 -1.8 putative metal-sensitive transcriptional regulator, MerR family compare
PP_4515 -1.3 -2.6 Transcriptional regulator, MarR family compare
PP_5225 -1.3 -0.7 frataxin compare
PP_5427 -1.3 -1.7 conserved exported protein of unknown function compare
PP_1400 -1.3 -7.0 Alpha-ketoglutarate permease compare
PP_3603 -1.3 -3.3 Transcriptional regulator, GntR family compare
PP_0413 -1.3 -7.3 Polyamine ABC transporter, permease protein compare
PP_5145 -1.2 -9.5 phosphoenolpyruvate-dependent regulator (with NPR and NTR proteins) compare
PP_1097 -1.2 -0.8 Methionine--tRNA ligase compare
PP_5027 -1.2 -2.0 D-tyrosyl-tRNA(Tyr) deacylase compare
PP_2437 -1.2 -5.0 putative Acyl-CoA dehydrogenase compare
PP_3829 -1.2 -1.9 Molybdenum transport system permease protein ModB compare
PP_5155 -1.2 -2.6 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_2857 -1.2 -1.5 conserved exported protein of unknown function compare
PP_1099 -1.2 -0.8 Cold shock protein CapB compare
PP_5184 -1.2 -4.0 glutamylpolyamine synthetase compare
PP_2335 -1.2 -6.1 methylcitrate synthase compare
PP_2513 -1.2 -1.6 4-oxalomesaconate tautomerase compare
PP_1110 -1.2 -1.7 serine acetyltransferase compare
PP_1153 -1.2 -2.1 putative lipoprotein compare
PP_3634 -1.2 -3.4 putative acetyltransferase, GNAT family compare
PP_4109 -1.2 -1.8 conserved protein of unknown function compare
PP_1862 -1.2 -2.0 conserved membrane protein of unknown function compare
PP_2793 -1.1 -1.2 Acyl-CoA dehydrogenase family protein compare
PP_2806 -1.1 -3.1 Transcriptional regulator, TetR family compare
PP_3766 -1.1 -2.0 Lactoylglutathione lyase compare
PP_4477 -1.1 -4.2 N-succinylarginine dihydrolase compare
PP_0376 -1.1 -4.9 Coenzyme PQQ synthesis protein E compare
PP_0378 -1.1 -3.7 Pyrroloquinoline-quinone synthase compare
PP_4870 -1.1 -1.5 Azurin compare
PP_5423 -1.1 -0.9 conserved membrane protein of unknown function compare
PP_1401 -1.1 -2.9 C4-dicarboxylate transport transcriptional regulatory protein compare
PP_3532 -1.1 -1.1 Transcriptional regulator, AsnC family compare
PP_1122 -1.1 -0.9 OmpA family protein compare
PP_3384 -1.1 -2.2 gluconate 2-dehydrogenase gamma subunit compare
PP_3621 -1.1 -3.5 vanillin dehydrogenase, iorA-like component (from data) compare
PP_3726 -1.1 -0.6 Enoyl-CoA hydratase/isomerase family protein compare
PP_3508 -1.1 -2.2 Protein CobW compare
PP_1215 -1.1 -0.7 Crossover junction endodeoxyribonuclease RuvC compare
PP_3417 -1.1 -3.2 D-gluconate transporter compare
PP_5505 -1.1 -2.3 conserved transmembrane protein of unknown function compare
PP_1804 -1.1 -6.4 Glycosyl transferase WbpL compare
PP_2631 -1.1 -1.6 putative cellulose biosynthesis, BcsF/YhjT compare
PP_2682 -1.1 -3.3 Fe-containing alcohol dehydrogenase compare
PP_5317 -1.1 -1.3 Probable chorismate pyruvate-lyase compare
PP_1854 -1.1 -3.6 conserved protein of unknown function compare
PP_5100 -1.1 -1.3 dITP/XTP pyrophosphatase compare
PP_4320 -1.1 -3.9 cytochrome c-type biogenesis protein compare
PP_1836 -1.1 -2.1 putative metal transporter, ZIP family compare
PP_2720 -1.1 -1.2 conserved protein of unknown function compare
PP_4236 -1.1 -3.4 putative Thiol:disulfide interchange protein dsbE compare


Specific Phenotypes

For 5 genes in this experiment

For pH Valerolactone in Pseudomonas putida KT2440

For pH Valerolactone across organisms