Experiment set39IT061 for Pseudomonas putida KT2440

Compare to:

Valerolactone carbon source pH 6.5

200 most important genes:

  gene name fitness t score description  
PP_3821 -4.0 -5.5 UTP-glucose-1-phosphate uridylyltransferase compare
PP_5095 -3.0 -3.4 pyrroline-5-carboxylate reductase compare
PP_0293 -2.9 -2.2 Imidazole glycerol phosphate synthase subunit HisF compare
PP_5495 -2.9 -2.0 protein of unknown function compare
PP_0422 -2.9 -3.4 Indole-3-glycerol phosphate synthase compare
PP_2568 -2.8 -1.2 Ring-cleaving dioxygenase compare
PP_2510 -2.7 -1.6 conserved protein of unknown function compare
PP_4999 -2.7 -3.2 dihydroorotase-like protein compare
PP_0420 -2.6 -6.2 aminodeoxychorismate synthase / para-aminobenzoate synthase multi-enzyme complex compare
PP_1088 -2.6 -7.2 Argininosuccinate synthase compare
PP_5644 -2.5 -1.8 conserved membrane protein of unknown function compare
PP_4723 -2.5 -17.1 Carbamoyl-phosphate synthase large chain compare
PP_0417 -2.5 -8.4 Anthranilate synthase component 1 compare
PP_4678 -2.5 -6.9 Ketol-acid reductoisomerase compare
PP_4143 -2.4 -2.8 conserved protein of unknown function compare
PP_5289 -2.3 -1.6 Acetylglutamate kinase compare
PP_4724 -2.3 -10.7 Carbamoyl-phosphate synthase small chain compare
PP_1995 -2.3 -4.4 N-(5'-phosphoribosyl)anthranilate isomerase compare
PP_3117 -2.2 -2.2 putative protein involved in error-prone processing of DNA lesions compare
PP_4116 -2.2 -7.0 isocitrate lyase compare
PP_0967 -2.2 -5.6 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_3409 -2.2 -1.5 putative Cobalamin biosynthesis protein cobE compare
PP_1864 -2.2 -2.0 conserved protein of unknown function compare
PP_0966 -2.2 -5.8 Histidinol dehydrogenase compare
PP_0607 -2.2 -2.1 putative Type IV pili biogenesis protein FimT compare
PP_0691 -2.2 -9.0 Glutamate 5-kinase compare
PP_2433 -2.2 -1.5 conserved protein of unknown function compare
PP_3637 -2.2 -2.6 putative Sulfonate ABC transporter, ATP-binding protein compare
PP_2327 -2.1 -4.6 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_4697 -2.1 -1.5 poly(A) polymerase compare
PP_1142 -2.1 -1.3 conserved protein of unknown function compare
PP_0290 -2.1 -2.9 Imidazole glycerol phosphate synthase subunit HisH compare
PP_4966 -2.1 -1.9 transcriptional regulator of methionine metabolism compare
PP_4680 -2.0 -5.9 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_3874 -2.0 -2.0 conserved protein of unknown function compare
PP_4238 -2.0 -1.5 conserved protein of unknown function compare
PP_0834 -2.0 -1.4 Sec translocation complex subunit YajC compare
PP_0905 -2.0 -1.2 conserved exported protein of unknown function compare
PP_1079 -2.0 -3.6 Ornithine carbamoyltransferase compare
PP_4835 -2.0 -1.8 conserved exported protein of unknown function compare
PP_1986 -1.9 -1.3 3-isopropylmalate dehydratase small subunit compare
PP_5090 -1.9 -1.3 putative cell division protein compare
PP_5155 -1.9 -3.0 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_0289 -1.9 -4.5 Imidazoleglycerol-phosphate dehydratase compare
PP_0421 -1.9 -4.6 Anthranilate phosphoribosyltransferase compare
PP_2700 -1.9 -1.3 AhpC/TSA family protein compare
PP_0276 -1.9 -0.8 Transcriptional regulator, Cro/CI family compare
PP_2354 -1.9 -6.6 Sensory box histidine kinase/response regulator compare
PP_2217 -1.8 -2.0 enoyl-CoA hydratase compare
PP_4700 -1.8 -2.5 pantothenate synthetase compare
PP_5202 -1.8 -1.1 putative cell division protein compare
PP_4695 -1.8 -5.6 Sensory box histidine kinase compare
PP_0356 -1.8 -4.2 malate synthase G compare
PP_5097 -1.8 -6.9 homoserine O-acetyltransferase compare
PP_1985 -1.8 -3.0 3-isopropylmalate dehydratase large subunit compare
PP_5185 -1.8 -3.4 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_5015 -1.8 -2.9 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PP_5098 -1.8 -3.6 methionine biosynthesis protein MetW compare
PP_2581 -1.8 -1.0 conserved protein of unknown function compare
PP_1778 -1.8 -1.2 Lipopolysaccharide ABC export system, permease protein compare
PP_2682 -1.8 -3.7 Fe-containing alcohol dehydrogenase compare
PP_2848 -1.7 -2.2 urease accessory protein compare
PP_2229 -1.7 -1.2 putative K(+)/H(+) antiporter subunit C compare
PP_2118 -1.7 -2.0 conserved protein of unknown function compare
PP_1269 -1.7 -0.7 Universal stress protein family compare
PP_4102 -1.7 -2.0 conserved protein of unknown function compare
PP_4328 -1.7 -2.0 conserved protein of unknown function compare
PP_5128 -1.7 -5.1 Dihydroxy-acid dehydratase compare
PP_2145 -1.7 -5.6 beta-N-acetylglucosaminidase compare
PP_1110 -1.7 -1.8 serine acetyltransferase compare
PP_3511 -1.6 -5.3 Branched-chain-amino-acid aminotransferase compare
PP_2299 -1.6 -2.4 Trigger factor compare
PP_0848 -1.6 -1.1 donor of Fe2+ and regulator of cysteine desulfurase activity compare
PP_3938 -1.6 -0.9 conserved protein of unknown function compare
PP_4994 -1.6 -3.9 conserved protein of unknown function compare
PP_0435 -1.6 -10.3 Peptidase, M23/M37 family compare
PP_0627 -1.6 -2.2 conserved protein of unknown function compare
PP_0965 -1.6 -4.8 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_1430 -1.6 -5.1 putative periplasmic serine endoprotease DegP-like compare
PP_2900 -1.6 -1.5 conserved protein of unknown function compare
PP_2168 -1.6 -5.8 Transaldolase compare
PP_1493 -1.6 -1.5 chemotaxis response regulator protein-glutamate methylesterase of group 3 operon compare
PP_4940 -1.6 -1.9 Putative glycosyltransferase compare
PP_3967 -1.6 -2.0 MutT/nudix family protein compare
PP_1025 -1.6 -6.9 2-isopropylmalate synthase compare
PP_2371 -1.6 -1.9 Sulphite reductase hemoprotein, beta subunit compare
PP_0735 -1.6 -0.9 molybdopterin-synthase adenylyltransferase compare
PP_2513 -1.6 -1.6 4-oxalomesaconate tautomerase compare
PP_0379 -1.6 -4.0 Coenzyme PQQ synthesis protein B compare
PP_1632 -1.6 -1.5 conserved protein of unknown function compare
PP_2001 -1.5 -5.5 O-succinylhomoserine sulfhydrylase compare
PP_2999 -1.5 -0.6 Glyoxalase family protein compare
PP_2910 -1.5 -3.8 L-2-hydroxyglutarate oxidase compare
PP_4701 -1.5 -0.6 glucose-6-phosphate isomerase compare
PP_2669 -1.5 -4.2 putative Outer membrane protein compare
PP_1742 -1.5 -1.8 conserved inner membrane protein of unknown function compare
PP_4227 -1.5 -1.3 conserved protein of unknown function compare
PP_4787 -1.5 -2.1 putative protein with nucleoside triphosphate hydrolase domain compare
PP_1571 -1.5 -1.7 conserved protein of unknown function compare
PP_3880 -1.5 -0.9 conserved exported protein of unknown function compare
PP_2356 -1.5 -4.8 putative Phytochrome family protein compare
PP_2414 -1.5 -2.4 conserved exported protein of unknown function compare
PP_1988 -1.5 -3.5 3-isopropylmalate dehydrogenase compare
PP_0434 -1.4 -7.0 Anhydro-N-acetylmuramic acid kinase compare
PP_0184 -1.4 -1.7 Argininosuccinate lyase compare
PP_1349 -1.4 -2.7 ATP:cob(I)alamin adenosyltransferase compare
PP_0127 -1.4 -4.5 Thiol:disulfide interchange protein compare
PP_4296 -1.4 -0.8 conserved exported protein of unknown function compare
PP_3346 -1.4 -1.7 Nickel transporter ATP-binding protein compare
PP_t10 -1.4 -0.8 tRNA-Pro compare
PP_3828 -1.4 -3.4 Molybdate-binding periplasmic protein compare
PP_1355 -1.4 -10.7 Muropeptide permease AmpG compare
PP_0405 -1.4 -9.7 conserved protein of unknown function compare
PP_3707 -1.4 -2.3 conserved protein of unknown function compare
PP_3243 -1.4 -1.1 Acetyltransferase, GNAT family compare
PP_3378 -1.4 -0.8 putative 2-ketogluconokinase compare
PP_5558 -1.4 -1.9 putative transcriptional xre family of phage origin compare
PP_5110 -1.4 -0.8 cytokinetic ring ABC transporter-like subunit - ATP-binding subunit compare
PP_4909 -1.4 -5.5 phosphoserine phosphatase compare
PP_1317 -1.4 -3.9 Ubiquinol-cytochrome c reductase iron-sulfur subunit compare
PP_3392 -1.4 -0.8 conserved protein of unknown function compare
PP_1124 -1.4 -2.1 conserved membrane protein of unknown function compare
PP_0414 -1.4 -2.9 Polyamine ABC transporter, permease protein compare
PP_0185 -1.4 -4.2 Positive alginate biosynthesis regulatory protein compare
PP_4058 -1.4 -5.1 1,4-alpha-glucan branching enzyme compare
PP_3226 -1.3 -2.8 Acyl-CoA dehydrogenase-related protein compare
PP_5100 -1.3 -1.3 dITP/XTP pyrophosphatase compare
PP_0040 -1.3 -1.6 hypothetical protein compare
PP_2714 -1.3 -5.1 Sensor histidine kinase compare
PP_3239 -1.3 -0.9 putative cointegrate resolution protein T Tn4652 compare
PP_0368 -1.3 -4.6 putative Acyl-CoA dehydrogenase compare
PP_3162 -1.3 -4.0 benzoate 1,2-dioxygenase subunit beta compare
PP_1598 -1.3 -2.7 regulatory intramembrane protein RIP zinc protease compare
PP_2677 -1.3 -2.0 conserved exported protein of unknown function compare
PP_0406 -1.3 -2.8 Nucleotidyltransferase family protein compare
PP_4699 -1.3 -1.6 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PP_1233 -1.3 -3.9 sulfurtransferase compare
PP_5537 -1.3 -1.3 conserved membrane protein of unknown function compare
PP_2672 -1.3 -2.6 Transcriptional activator protein ExaE compare
PP_0292 -1.3 -2.1 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_5437 -1.3 -2.5 protein of unknown function compare
PP_0291 -1.3 -2.1 conserved protein of unknown function compare
PP_0164 -1.3 -3.3 conserved protein of unknown function compare
PP_5168 -1.3 -0.9 sulfate/thiosulfate import ATP-binding protein compare
PP_5232 -1.3 -1.0 conserved protein of unknown function compare
PP_2348 -1.3 -2.8 Sensor histidine kinase compare
PP_1400 -1.3 -6.1 Alpha-ketoglutarate permease compare
PP_2643 -1.3 -3.2 aromatic acid chemoreceptor compare
PP_5240 -1.3 -1.7 Response regulator compare
PP_0086 -1.3 -1.7 conserved protein of unknown function compare
PP_t49 -1.2 -1.4 tRNA-Met compare
PP_5203 -1.2 -3.2 5-formyltetrahydrofolate cyclo-ligase compare
PP_0378 -1.2 -4.5 Pyrroloquinoline-quinone synthase compare
PP_0508 -1.2 -1.4 conserved exported protein of unknown function compare
PP_1623 -1.2 -5.0 RNA polymerase, sigma S (sigma 38) factor compare
PP_1439 -1.2 -0.9 conserved exported protein of unknown function compare
PP_3307 -1.2 -1.1 conserved protein of unknown function compare
PP_5146 -1.2 -4.7 RNA pyrophosphohydrolase compare
PP_3919 -1.2 -2.1 conserved protein of unknown function compare
PP_0381 -1.2 -3.7 Coenzyme PQQ synthesis protein F compare
PP_3824 -1.2 -2.0 conserved exported protein of unknown function compare
PP_3003 -1.2 -2.4 3-dehydroquinate dehydratase 3, type II compare
PP_4009 -1.2 -2.2 ATP-dependent Clp protease adapter protein ClpS compare
PP_4073 -1.2 -1.3 conserved exported protein of unknown function compare
PP_0082 -1.2 -0.8 tryptophan synthase alpha chain compare
PP_1062 -1.2 -0.8 MutT/nudix family protein compare
PP_4726 -1.2 -1.2 Chaperone protein DnaJ compare
PP_4582 -1.2 -2.3 conserved membrane protein of unknown function compare
PP_3883 -1.2 -1.3 putative Phage holin compare
PP_2442 -1.2 -1.0 conserved protein of unknown function, DUF480 family compare
PP_5075 -1.2 -5.2 glutamate synthase (NADPH) beta subunit compare
PP_2668 -1.2 -1.1 ABC efflux transporter, ATP-binding protein compare
PP_5704 -1.2 -2.5 conserved protein of unknown function compare
PP_4681 -1.2 -1.3 conserved protein of unknown function compare
PP_2665 -1.2 -3.0 Glycerol metabolism activator compare
PP_2137 -1.2 -1.6 beta-ketoadipyl CoA thiolase, beta component compare
PP_2416 -1.2 -1.7 putative Iron ABC transporter, ATP-binding protein compare
PP_4890 -1.2 -1.7 ATP phosphoribosyltransferase regulatory subunit compare
PP_4364 -1.2 -2.2 putative Anti-sigma F factor antagonist compare
PP_4320 -1.1 -3.2 cytochrome c-type biogenesis protein compare
PP_2437 -1.1 -3.8 putative Acyl-CoA dehydrogenase compare
PP_1999 -1.1 -1.3 membrane protein required for colicin V production compare
PP_2335 -1.1 -4.6 methylcitrate synthase compare
PP_4997 -1.1 -0.6 pyrimidine operon regulatory protein/uracil phosphoribosyltransferase compare
PP_3748 -1.1 -1.0 conserved hypothetical protein compare
PP_1111 -1.1 -2.8 putative Synthetase compare
PP_2152 -1.1 -1.9 glycerophosphoryl diester phosphodiesterase compare
PP_0380 -1.1 -3.3 Coenzyme PQQ synthesis protein A compare
PP_1780 -1.1 -8.1 putative mannosyltransferase compare
PP_1468 -1.1 -1.5 Tyrosine recombinase XerD compare
PP_0787 -1.1 -1.9 quinolinate phosphoribosyltransferase (decarboxylating) monomer compare
PP_5748 -1.1 -1.2 cytochrome c heme lyase subunit compare
PP_2737 -1.1 -0.5 Oxidoreductase, short-chain dehydrogenase/reductase family compare
PP_4820 -1.1 -3.1 tRNA-dihydrouridine synthase B compare
PP_1635 -1.1 -2.6 DNA-binding response regulator compare
PP_2820 -1.1 -1.4 HTH-type transcriptional regulator nfxB compare
PP_2520 -1.1 -2.1 conserved protein of unknown function compare
PP_3105 -1.0 -0.9 conserved membrane protein of unknown function compare
PP_3205 -1.0 -1.5 Fumarylacetoacetate hydrolase family protein compare
PP_5552 -1.0 -1.3 conserved protein of unknown function compare


Specific Phenotypes

For 6 genes in this experiment

For pH Valerolactone in Pseudomonas putida KT2440

For pH Valerolactone across organisms