Experiment set39IT058 for Pseudomonas putida KT2440

Compare to:

D-Glucose carbon source pH 6.5

200 most detrimental genes:

  gene name fitness t score description  
PP_4593 +2.0 3.0 conserved protein of unknown function compare
PP_4099 +1.4 12.4 two-componenent system BarA/UvrY - regulatory subunit compare
PP_1650 +1.4 10.3 Sensor protein GacS compare
PP_3876 +1.3 1.7 conserved protein of unknown function compare
PP_1445 +1.3 6.4 carbohydrate-selective porin compare
PP_4528 +1.3 1.0 conserved protein of unknown function compare
PP_4373 +1.2 8.4 Transcriptional regulator FleQ compare
PP_5145 +1.1 9.7 phosphoenolpyruvate-dependent regulator (with NPR and NTR proteins) compare
PP_3810 +1.1 2.2 conserved protein of unknown function compare
PP_0685 +1.1 3.9 conserved protein of unknown function compare
PP_0948 +1.0 3.7 Phosphocarrier protein HPr compare
PP_1113 +1.0 5.5 Pyridoxal-phosphate dependent enzyme family protein compare
PP_4874 +0.9 0.9 50S ribosomal protein L9 compare
PP_0630 +0.9 1.1 DNA gyrase inhibitor YacG compare
PP_5054 +0.9 1.2 glutaredoxin 3 compare
PP_1322 +0.9 1.3 putative Lipoprotein compare
PP_1646 +0.9 2.7 putative Thioredoxin compare
PP_2403 +0.9 1.0 Chemotaxis protein CheY compare
PP_0167 +0.8 7.4 Toxin secretion ATP-binding protein compare
PP_0168 +0.8 7.5 putative surface adhesion protein compare
PP_3110 +0.8 1.3 protein of unknown function compare
PP_0166 +0.8 6.3 HlyD family secretion protein compare
PP_1938 +0.8 1.1 conserved protein of unknown function compare
PP_4136 +0.8 0.7 Transcriptional regulator, LuxR family compare
PP_4789 +0.8 2.0 heat shock protein, Co2+ and Mg2+ efflux protein compare
PP_5609 +0.8 1.1 conserved protein of unknown function compare
PP_4519 +0.8 6.4 Agglutination protein compare
PP_2880 +0.8 2.2 Transcriptional regulator, TetR family compare
PP_2889 +0.7 3.0 putative Transmembrane regulator PrtR compare
PP_0235 +0.7 2.0 Peroxidase compare
PP_5042 +0.7 1.8 conserved protein of unknown function compare
PP_3840 +0.7 1.7 conserved protein of unknown function compare
PP_1892 +0.7 2.7 conserved protein of unknown function compare
PP_0852 +0.7 2.0 Transcriptional regulator, Cro/CI family compare
PP_3883 +0.7 2.1 putative Phage holin compare
PP_2899 +0.7 1.1 conserved exported protein of unknown function compare
PP_4937 +0.7 3.5 toluene tolerance protein compare
PP_3198 +0.7 1.9 Ferredoxin, 2Fe-2S compare
PP_2878 +0.7 1.0 conserved protein of unknown function compare
PP_0153 +0.7 1.7 hypothetical protein compare
PP_3043 +0.7 1.0 conserved protein of unknown function compare
PP_3365 +0.7 0.8 Acetolactate synthase compare
PP_2510 +0.7 1.3 conserved protein of unknown function compare
PP_4171 +0.7 5.5 conserved exported protein of unknown function compare
PP_4793 +0.7 0.9 conserved protein of unknown function compare
PP_5167 +0.7 2.8 conserved hypothetical protein compare
PP_1114 +0.7 3.4 SEC-C domain protein compare
PP_0377 +0.7 1.3 coenzyme PQQ synthesis protein D compare
PP_0925 +0.7 2.0 conserved protein of unknown function compare
PP_0345 +0.7 2.9 putative Heptose kinase WapP compare
PP_1473 +0.7 1.8 conserved protein of unknown function compare
PP_3401 +0.7 2.3 conserved protein of unknown function compare
PP_2307 +0.7 1.3 conserved protein of unknown function compare
PP_2665 +0.7 2.7 Glycerol metabolism activator compare
PP_4721 +0.6 2.3 conserved membrane protein of unknown function compare
PP_2633 +0.6 1.0 conserved protein of unknown function compare
PP_1829 +0.6 1.1 Hydrolase, alpha/beta fold family compare
PP_4156 +0.6 1.2 Transcriptional regulator, LysR family compare
PP_2776 +0.6 1.9 Homocysteine S-methyltransferase family protein compare
PP_0306 +0.6 2.0 conserved protein of unknown function compare
PP_5652 +0.6 1.1 conserved protein of unknown function, phage origin compare
PP_1381 +0.6 1.4 4-carboxymuconolactone decarboxylase compare
PP_5201 +0.6 0.7 conserved protein of unknown function, UPF0149 family compare
PP_4580 +0.6 2.1 conserved protein of unknown function compare
PP_1062 +0.6 1.1 MutT/nudix family protein compare
PP_2550 +0.6 1.1 putative transcriptional regulatory protein compare
PP_4073 +0.6 0.8 conserved exported protein of unknown function compare
PP_5558 +0.6 1.8 putative transcriptional xre family of phage origin compare
PP_5429 +0.6 2.4 protein of unknown function compare
PP_3726 +0.6 0.5 Enoyl-CoA hydratase/isomerase family protein compare
PP_0505 +0.6 2.4 conserved protein of unknown function compare
PP_3404 +0.6 2.6 conserved protein of unknown function compare
PP_0891 +0.6 1.9 conserved exported protein of unknown function compare
PP_5140 +0.6 1.5 Transcriptional regulator, MerR family compare
PP_4662 +0.6 2.1 conserved protein of unknown function compare
PP_1119 +0.6 2.5 conserved protein of unknown function compare
PP_2480 +0.6 2.8 putative Xanthine dehydrogenase accessory factor compare
PP_4205 +0.6 2.2 mRNA interferase MqsR of the MqsA-MqsR antitoxin/toxin complex and DNA-binding transcriptional repressor compare
PP_2795 +0.6 2.2 AMP-binding domain protein compare
PP_4946 +0.6 3.3 sodium/L-proline transporter compare
PP_0803 +0.6 3.5 Protein secretion ABC efflux system, membrane fusion protein compare
PP_1074 +0.6 1.5 DNA-binding transcriptional repressor - GlpR-glycerol-3-phosphate compare
PP_0893 +0.6 1.7 ThiJ/PfpI family protein compare
PP_0846 +0.5 0.6 DnaK-like molecular chaperone specific for IscU compare
PP_2653 +0.5 1.5 Transcriptional regulator, Cro/CI family compare
PP_4409 +0.5 2.0 Site-specific recombinase, phage integrase family compare
PP_3034 +0.5 1.9 putative Regulator protein compare
PP_4710 +0.5 3.9 tRNA pseudouridine 55 synthase compare
PP_1112 +0.5 3.3 conserved membrane protein of unknown function compare
PP_5520 +0.5 2.2 conserved protein of unknown function compare
PP_0837 +0.5 2.7 putative regulator of flagellation compare
PP_0574 +0.5 3.5 DNA-binding response regulator, LuxR family compare
PP_4760 +0.5 1.3 Alcohol dehydrogenase, zinc-containing compare
PP_3117 +0.5 1.3 putative protein involved in error-prone processing of DNA lesions compare
PP_3083 +0.5 2.0 putative Membrane protein compare
PP_2863 +0.5 2.2 conserved membrane protein of unknown function compare
PP_5473 +0.5 1.4 putative transcriptional regulator, LuxR family compare
PP_5191 +0.5 1.0 conserved exported protein of unknown function compare
PP_2798 +0.5 1.4 putative Oxidoreductase compare
PP_2014 +0.5 2.5 conserved membrane protein of unknown function compare
PP_4828 +0.5 0.7 Precorrin-8X methylmutase compare
PP_5625 +0.5 1.7 conserved protein of unknown function compare
PP_1261 +0.5 1.3 2-ketoaldonate reductase / hydroxypyruvate/glyoxylate reductase compare
PP_5317 +0.5 1.1 Probable chorismate pyruvate-lyase compare
PP_0653 +0.5 1.1 conserved protein of unknown function compare
PP_3312 +0.5 1.2 putative Heat shock protein compare
PP_1825 +0.5 1.6 conserved exported protein of unknown function compare
PP_5430 +0.5 1.7 protein of unknown function compare
PP_3036 +0.5 1.1 conserved protein of unknown function compare
PP_4952 +0.5 0.7 ATP-dependent RNA helicase, specific for 23S rRNA compare
PP_2615 +0.5 0.7 hemolysin-coregulated protein compare
PP_3098 +0.5 0.9 conserved protein of unknown function compare
PP_3792 +0.5 1.1 conserved protein of unknown function compare
PP_2700 +0.5 0.9 AhpC/TSA family protein compare
PP_3774 +0.5 2.4 conserved protein of unknown function compare
PP_0591 +0.5 1.9 Adenine deaminase compare
PP_2330 +0.5 2.7 conserved protein of unknown function compare
PP_0191 +0.5 1.1 Transcriptional regulatory protein AlgQ compare
PP_2999 +0.5 0.4 Glyoxalase family protein compare
PP_1998 +0.5 2.4 putative cell division protein compare
PP_1918 +0.5 3.8 septation protein compare
PP_1235 +0.5 2.2 AhpC/TSA family protein compare
PP_1166 +0.5 2.2 putative permease of the drug/metabolite transporter (DMT) superfamily compare
PP_1876 +0.5 1.9 putative ATP/GTP-binding protein of the AAA+ family compare
PP_4237 +0.5 2.0 periplasmic protein disulfide isomerase compare
PP_1651 +0.5 2.0 two-component response regulator compare
PP_3339 +0.5 1.5 conserved exported protein of unknown function compare
PP_2075 +0.5 2.1 conserved membrane protein of unknown function compare
PP_5445 +0.5 0.8 conserved protein of unknown function compare
PP_4451 +0.5 1.3 conserved protein of unknown function compare
PP_0181 +0.4 1.6 conserved protein of unknown function compare
PP_1008 +0.4 0.5 RNA polymerase subunit sigma-24 compare
PP_5588 +0.4 1.8 conserved protein of unknown function compare
PP_4273 +0.4 0.4 Transcriptional regulator, MerR family compare
PP_1245 +0.4 2.1 conserved exported protein of unknown function compare
PP_3938 +0.4 0.6 conserved protein of unknown function compare
PP_0533 +0.4 1.6 histidine kinase compare
PP_4253 +0.4 0.8 cytochrome c oxidase subunit, cbb3-type compare
PP_4771 +0.4 2.0 conserved membrane protein of unknown function compare
PP_4233 +0.4 1.3 putative Oxidoreductase, small subunit compare
PP_4814 +0.4 1.0 ATP-dependent protease La domain protein compare
PP_0804 +0.4 2.1 Protein secretion ABC efflux system, permease and ATP-binding protein compare
PP_1845 +0.4 1.1 Enoyl-CoA hydratase/isomerase family protein compare
PP_0209 +0.4 2.1 ATP-binding taurine transporter subunit compare
PP_4115 +0.4 1.9 conserved exported protein of unknown function compare
PP_2619 +0.4 1.4 FHA domain protein compare
PP_4787 +0.4 1.5 putative protein with nucleoside triphosphate hydrolase domain compare
PP_1390 +0.4 1.6 conserved exported protein of unknown function compare
PP_2819 +0.4 1.1 Outer membrane protein OprJ compare
PP_5708 +0.4 2.2 protein of unknown function compare
PP_2672 +0.4 2.2 Transcriptional activator protein ExaE compare
PP_5546 +0.4 0.9 conserved protein of unknown function compare
PP_2118 +0.4 0.9 conserved protein of unknown function compare
PP_4837 +0.4 1.2 conserved protein of unknown function compare
PP_4833 +0.4 1.7 SURF1 domain protein compare
PP_2474 +0.4 0.8 Glutathione S-transferase family protein compare
PP_2028 +0.4 1.4 conserved protein of unknown function containing tetratricopeptide (TPR) domain repeat compare
PP_5069 +0.4 1.8 Thioredoxin 2 compare
PP_3258 +0.4 1.4 conserved protein of unknown function compare
PP_5448 +0.4 1.4 conserved protein of unknown function compare
PP_2227 +0.4 1.6 putative Multicomponent potassium-proton antiporter, subunit E compare
PP_3902 +0.4 1.3 conserved protein of unknown function compare
PP_1489 +0.4 2.1 CheW domain protein compare
PP_2997 +0.4 1.7 CnmA compare
PP_3164 +0.4 1.1 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase compare
PP_5100 +0.4 1.1 dITP/XTP pyrophosphatase compare
PP_4825 +0.4 2.3 Membrane protein, MarC family compare
PP_5253 +0.4 0.9 Arylesterase compare
PP_5658 +0.4 1.4 protein of unknown function compare
PP_3228 +0.4 1.6 putative Periplasmic aliphatic sulfonate-binding protein compare
PP_1448 +0.4 2.2 conserved membrane protein of unknown function compare
PP_5569 +0.4 1.1 protein of unknown function of phage origin compare
PP_2898 +0.4 1.0 conserved exported protein of unknown function compare
PP_5053 +0.4 1.6 Protein-export protein SecB compare
PP_3343 +0.4 1.9 nickel ABC transporter permease subunit compare
PP_3017 +0.4 1.3 O6-methylguanine-DNA methyltransferase compare
PP_4616 +0.4 1.2 conserved protein of unknown function compare
PP_3322 +0.4 1.8 porphobilinogen synthase (delta-aminolevulinic acid dehydratase) compare
PP_2253 +0.4 1.3 Transcriptional regulator, GntR family compare
PP_2231 +0.4 1.0 putative permease of the drug/metabolite transporter (DMT) superfamily compare
PP_0165 +0.4 3.4 GGDEF domain protein compare
PP_1739 +0.4 1.0 conserved membrane protein of unknown function compare
PP_0163 +0.4 2.4 putative transcriptional regulator compare
PP_1178 +0.4 1.9 conserved protein of unknown function compare
PP_0137 +0.4 2.6 glutamate/aspartate-proton DAACS transporter compare
PP_4109 +0.4 1.2 conserved protein of unknown function compare
PP_1153 +0.4 1.2 putative lipoprotein compare
PP_0899 +0.4 1.9 putative Ferredoxin reductase compare
PP_1275 +0.4 1.4 conserved protein of unknown function compare
PP_1556 +0.4 1.1 conserved protein of unknown function compare
PP_2332 +0.4 2.4 conserved exported protein of unknown function compare
PP_3802 +0.4 1.4 putative Cation ABC transporter, ATP-binding protein compare
PP_4808 +0.4 1.1 23S rRNA m3psi1915 methyltransferase compare
PP_2361 +0.4 1.4 putative chaperone protein compare
PP_5045 +0.4 1.4 tRNA sulfurtransferase compare
PP_4645 +0.4 2.3 Large-conductance mechanosensitive channel compare
PP_2634 +0.4 2.0 putative Cellulose synthase compare
PP_2903 +0.4 0.8 peptidyl-prolyl cis-trans isomerase B (rotamase B) compare
PP_1727 +0.4 1.7 Transcriptional regulator, GntR family compare
PP_5487 +0.4 0.8 conserved protein of unknown function compare


Specific Phenotypes

For 3 genes in this experiment

For pH D-Glucose in Pseudomonas putida KT2440

For pH D-Glucose across organisms