Experiment set39IT057 for Pseudomonas putida KT2440

Compare to:

D-Glucose carbon source pH 6.5

200 most detrimental genes:

  gene name fitness t score description  
PP_1650 +1.5 12.0 Sensor protein GacS compare
PP_4593 +1.5 1.6 conserved protein of unknown function compare
PP_4099 +1.5 13.7 two-componenent system BarA/UvrY - regulatory subunit compare
PP_3876 +1.4 1.8 conserved protein of unknown function compare
PP_0232 +1.4 1.5 ATP-binding taurine transporter subunit compare
PP_0593 +1.4 1.3 putative ribosome-binding factor compare
PP_1445 +1.4 7.0 carbohydrate-selective porin compare
PP_1344 +1.3 1.9 conserved protein of unknown function compare
PP_4373 +1.3 10.1 Transcriptional regulator FleQ compare
PP_1008 +1.2 2.7 RNA polymerase subunit sigma-24 compare
PP_0948 +1.1 4.1 Phosphocarrier protein HPr compare
PP_5145 +1.1 10.1 phosphoenolpyruvate-dependent regulator (with NPR and NTR proteins) compare
PP_0167 +1.1 9.6 Toxin secretion ATP-binding protein compare
PP_2878 +1.1 1.6 conserved protein of unknown function compare
PP_0166 +1.1 8.4 HlyD family secretion protein compare
PP_3245 +1.1 2.0 conserved protein of unknown function compare
PP_1568 +1.0 1.3 conserved protein of unknown function compare
PP_0168 +1.0 9.3 putative surface adhesion protein compare
PP_4937 +1.0 5.0 toluene tolerance protein compare
PP_0345 +1.0 5.1 putative Heptose kinase WapP compare
PP_1113 +1.0 5.8 Pyridoxal-phosphate dependent enzyme family protein compare
PP_4519 +0.9 7.6 Agglutination protein compare
PP_4273 +0.9 1.2 Transcriptional regulator, MerR family compare
PP_0306 +0.9 2.6 conserved protein of unknown function compare
PP_5038 +0.9 2.3 conserved lipoprotein of unknown function compare
PP_4942 +0.9 2.0 conserved protein of unknown function compare
PP_1692 +0.9 2.2 conserved protein of unknown function compare
PP_5241 +0.9 1.6 DNA-binding response regulator, LuxR family compare
PP_5093 +0.9 0.7 twitching motility protein compare
PP_3829 +0.9 3.0 Molybdenum transport system permease protein ModB compare
PP_5658 +0.9 1.5 protein of unknown function compare
PP_1328 +0.9 1.9 Protein MraZ compare
PP_4159 +0.9 1.6 Potassium-transporting ATPase C chain compare
PP_2668 +0.8 1.5 ABC efflux transporter, ATP-binding protein compare
PP_2650 +0.8 1.4 putative 4-hydroxybutyrate dehydrogenase compare
PP_4845 +0.8 1.9 putative Urea ABC transporter, ATP-binding protein compare
PP_1575 +0.8 1.5 conserved protein of unknown function compare
PP_4271 +0.8 0.8 conserved protein of unknown function compare
PP_4828 +0.8 1.2 Precorrin-8X methylmutase compare
PP_3643 +0.8 2.8 putative Oxidoreductase compare
PP_0509 +0.8 1.5 conserved protein of unknown function compare
PP_5705 +0.8 1.1 protein of unknown function compare
PP_2147 +0.7 2.3 conserved exported protein of unknown function compare
PP_0236 +0.7 1.5 NAD(P)H-dependent FMN reductase subunit compare
PP_0313 +0.7 2.2 putative electron transfer flavoprotein beta subunit compare
PP_0505 +0.7 3.0 conserved protein of unknown function compare
PP_3532 +0.7 1.5 Transcriptional regulator, AsnC family compare
PP_5609 +0.7 2.1 conserved protein of unknown function compare
PP_5491 +0.7 1.2 conserved protein of unknown function with SEC-C motif domain compare
PP_3808 +0.7 0.6 Antibiotic synthesis protein MbtH compare
PP_4214 +0.7 2.8 pyoverdine biosynthesis related protein compare
PP_2889 +0.7 2.2 putative Transmembrane regulator PrtR compare
PP_2640 +0.7 3.2 Acetyltransferase, GNAT family compare
PP_4814 +0.7 1.2 ATP-dependent protease La domain protein compare
PP_4171 +0.7 5.5 conserved exported protein of unknown function compare
PP_5429 +0.7 3.4 protein of unknown function compare
PP_3825 +0.7 2.8 conserved protein of unknown function compare
PP_5140 +0.7 1.4 Transcriptional regulator, MerR family compare
PP_2510 +0.7 1.4 conserved protein of unknown function compare
PP_2306 +0.7 1.3 conserved exported protein of unknown function compare
PP_0827 +0.7 2.5 putative phosphonate transport system permease protein PtxC compare
PP_5448 +0.7 2.3 conserved protein of unknown function compare
PP_2060 +0.7 1.5 DNA-binding transcriptional dual regulator - SoxR-reversible one-electron oxidation of its [2Fe-2S] cluster, NADPH-dependent compare
PP_0566 +0.7 1.8 translation-related factor compare
PP_0627 +0.7 1.2 conserved protein of unknown function compare
PP_0165 +0.6 5.3 GGDEF domain protein compare
PP_0803 +0.6 3.2 Protein secretion ABC efflux system, membrane fusion protein compare
PP_2906 +0.6 2.5 Sensor histidine kinase compare
PP_5423 +0.6 1.3 conserved membrane protein of unknown function compare
PP_3541 +0.6 1.0 Transporter, MgtC family compare
PP_0666 +0.6 1.7 conserved protein of unknown function compare
PP_0899 +0.6 3.5 putative Ferredoxin reductase compare
PP_4073 +0.6 1.5 conserved exported protein of unknown function compare
PP_0278 +0.6 2.3 conserved protein of unknown function compare
PP_4720 +0.6 0.8 putative RNA binding protein compare
PP_1455 +0.6 1.4 conserved protein of unknown function compare
PP_4642 +0.6 0.5 Cyclic diguanosine monophosphate-binding protein compare
PP_5267 +0.6 1.1 putative cytochrome c5 compare
PP_3519 +0.6 0.5 putative Lipoprotein compare
PP_4710 +0.6 4.5 tRNA pseudouridine 55 synthase compare
PP_3055 +0.6 1.9 Pyocin R2_PP, tail formation protein compare
PP_2108 +0.6 2.7 conserved protein of unknown function compare
PP_5537 +0.6 0.9 conserved membrane protein of unknown function compare
PP_4528 +0.6 0.5 conserved protein of unknown function compare
PP_0556 +0.6 1.2 Acetoin catabolism protein compare
PP_3194 +0.6 1.7 conserved protein of unknown function compare
PP_0304 +0.6 2.3 Carnitine uptake ABC transporter, periplasmic component compare
PP_1124 +0.6 1.3 conserved membrane protein of unknown function compare
PP_0643 +0.6 1.6 protein of unknown function compare
PP_2256 +0.6 1.9 Transcriptional regulator, Cro/CI family compare
PP_3614 +0.6 1.3 conserved membrane protein of unknown function compare
PP_4787 +0.6 1.3 putative protein with nucleoside triphosphate hydrolase domain compare
PP_4929 +0.6 1.6 Transcriptional regulator, LysR family compare
PP_3353 +0.6 2.7 putative sulfatase-modifying factor (C-alpha-formyglycine- generating enzyme) compare
PP_0191 +0.6 1.3 Transcriptional regulatory protein AlgQ compare
PP_0305 +0.6 1.7 HTH-type transcriptional regulator CdhR compare
PP_1428 +0.6 1.6 Sigma factor AlgU negative regulatory protein compare
PP_2243 +0.6 2.1 conserved protein of unknown function compare
PP_2784 +0.6 1.8 Oxidoreductase, short-chain dehydrogenase/reductase family compare
PP_1300 +0.5 2.3 putative amino acid ABC transporter - ATP-binding subunit compare
PP_0273 +0.5 1.5 conserved protein of unknown function compare
PP_0181 +0.5 1.6 conserved protein of unknown function compare
PP_1790 +0.5 2.9 putative Acylneuraminate cytidylyltransferase compare
PP_t64 +0.5 2.4 tRNA-Gly compare
PP_3810 +0.5 0.8 conserved protein of unknown function compare
PP_5714 +0.5 1.8 conserved protein of unknown function compare
PP_5337 +0.5 2.0 LysR family transcriptional regulator compare
PP_5085 +0.5 2.6 malic enzyme B compare
PP_3198 +0.5 1.4 Ferredoxin, 2Fe-2S compare
PP_1274 +0.5 2.5 Oxidoreductase, short-chain dehydrogenase/reductase family compare
PP_1998 +0.5 2.7 putative cell division protein compare
PP_3531 +0.5 1.5 conserved exported protein of unknown function compare
PP_1097 +0.5 1.0 Methionine--tRNA ligase compare
PP_2931 +0.5 2.3 conserved protein of unknown function compare
PP_3267 +0.5 1.8 putative Clp protease compare
PP_0630 +0.5 0.6 DNA gyrase inhibitor YacG compare
PP_1763 +0.5 1.3 putative oxidoreductase compare
PP_3408 +0.5 1.7 cobalt transporter subunit A compare
PP_3014 +0.5 1.1 conserved exported protein of unknown function compare
PP_5528 +0.5 0.4 conserved protein of unknown function compare
PP_1502 +0.5 3.1 OmpA family protein compare
PP_5495 +0.5 0.9 protein of unknown function compare
PP_3487 +0.5 0.8 conserved exported protein of unknown function compare
PP_2759 +0.5 1.5 ribose ABC transporter - ATP-binding subunit compare
PP_4973 +0.5 2.6 conserved membrane protein of unknown function compare
PP_3258 +0.5 1.7 conserved protein of unknown function compare
PP_4178 +0.5 1.9 Dienelactone hydrolase family protein compare
PP_5647 +0.5 2.6 conserved protein of unknown function compare
PP_2053 +0.5 2.1 conserved protein of unknown function compare
PP_5561 +0.5 1.2 conserved protein of unknown function compare
PP_3831 +0.5 2.3 conserved protein of unknown function compare
PP_5202 +0.5 1.0 putative cell division protein compare
PP_2796 +0.5 2.8 conserved protein of unknown function compare
PP_2319 +0.5 1.4 conserved protein of unknown function compare
PP_3185 +0.5 1.7 Pet18 protein compare
PP_3280 +0.5 1.6 3-oxoadipyl-CoA/3-oxo-5,6-dehydrosuberyl-CoA thiolase compare
PP_3048 +0.5 0.7 conserved protein of unknown function compare
PP_3866 +0.5 1.0 conserved protein of unknown function compare
PP_1543 +0.5 2.4 conserved protein of unknown function compare
PP_5488 +0.5 1.5 conserved protein of unknown function compare
PP_2309 +0.5 0.5 conserved protein of unknown function compare
PP_4483 +0.5 1.9 histidine lysine / arginine / ornithine ABC transporter - ATP binding subunit compare
PP_0775 +0.5 0.7 conserved protein of unknown function compare
PP_2509 +0.5 1.0 conserved protein of unknown function compare
PP_5248 +0.5 0.4 putative hydrolase compare
PP_5678 +0.5 2.7 protein of unknown function compare
PP_2923 +0.5 1.7 conserved protein of unknown function compare
PP_1812 +0.5 1.7 conserved protein of unknown function compare
PP_3018 +0.5 1.8 conserved protein of unknown function compare
PP_3906 +0.5 1.0 conserved protein of unknown function compare
PP_4228 +0.5 2.4 conserved protein of unknown function compare
PP_2457 +0.5 2.1 DNA-binding transcriptional repressor compare
PP_5659 +0.5 1.7 protein of unknown function compare
PP_2210 +0.5 2.1 LysR family transcriptional regulator compare
PP_2745 +0.5 1.7 Universal stress protein family compare
PP_1254 +0.5 1.8 XenA compare
PP_2573 +0.5 2.2 conserved protein of unknown function compare
PP_5293 +0.5 1.7 conserved protein of unknown function compare
PP_1265 +0.5 1.5 conserved protein of unknown function compare
PP_2826 +0.4 0.9 Transcriptional regulator MexT compare
PP_4743 +0.4 2.1 conserved protein of unknown function compare
PP_1309 +0.4 2.0 conserved exported protein of unknown function compare
PP_2433 +0.4 0.9 conserved protein of unknown function compare
PP_0807 +0.4 1.6 DNA-binding transcriptional dual regulator (NO) compare
PP_0550 +0.4 1.9 conserved protein of unknown function compare
PP_1396 +0.4 1.4 conserved protein of unknown function compare
PP_0307 +0.4 1.7 conserved exported protein of unknown function compare
PP_5367 +0.4 1.3 Transketolase domain protein compare
PP_1807 +0.4 2.7 2-dehydro-3-deoxyphosphooctonate aldolase compare
PP_2365 +0.4 1.1 Transcriptional regulator, AraC family compare
PP_3392 +0.4 0.5 conserved protein of unknown function compare
PP_0804 +0.4 2.4 Protein secretion ABC efflux system, permease and ATP-binding protein compare
PP_4135 +0.4 1.9 conserved protein of unknown function compare
PP_1924 +0.4 2.6 putative Phosphinothricin N-acetyltransferase compare
PP_2025 +0.4 1.1 Exonuclease SbcD compare
PP_2450 +0.4 2.4 conserved protein of unknown function compare
PP_3707 +0.4 2.0 conserved protein of unknown function compare
PP_2018 +0.4 1.4 adhesin-associated BNR repeat protein (from data) compare
PP_3362 +0.4 2.5 Transcriptional regulator, AsnC family compare
PP_3773 +0.4 1.4 conserved protein of unknown function compare
PP_5265 +0.4 1.4 Xanthine phosphoribosyltransferase compare
PP_2857 +0.4 1.0 conserved exported protein of unknown function compare
PP_3358 +0.4 1.8 hydroxycinnamoyl-CoA hydratase-lyase (EC 4.1.2.61) (from data) compare
PP_1319 +0.4 2.1 Ubiquinol--cytochrome c reductase, cytochrome c1 compare
PP_3728 +0.4 2.3 Sensor histidine kinase/response regulator compare
PP_5709 +0.4 2.2 protein of unknown function compare
PP_2816 +0.4 1.1 putative Transcriptional regulator NfxB compare
PP_2225 +0.4 1.8 putative Multicomponent potassium-proton antiporter, subunit G compare
PP_0685 +0.4 0.8 conserved protein of unknown function compare
PP_2176 +0.4 1.5 transcriptional regulator, LysR family compare
PP_0960 +0.4 1.9 phospholipid ABC transporter binding protein compare
PP_2846 +0.4 1.3 urease accessory protein compare
PP_4966 +0.4 1.2 transcriptional regulator of methionine metabolism compare
PP_3117 +0.4 0.9 putative protein involved in error-prone processing of DNA lesions compare
PP_3644 +0.4 2.3 putative Monooxygenase subunit compare
PP_1536 +0.4 1.0 conserved protein of unknown function compare
PP_2376 +0.4 3.9 Esterified fatty acid cis/trans isomerase compare
PP_4662 +0.4 1.4 conserved protein of unknown function compare
PP_2777 +0.4 1.8 putative Acyl carrier protein compare
PP_2076 +0.4 2.2 conserved protein of unknown function compare


Specific Phenotypes

For 3 genes in this experiment

For pH D-Glucose in Pseudomonas putida KT2440

For pH D-Glucose across organisms