Experiment set39IT053 for Pseudomonas putida KT2440

Compare to:

MOPS minimal media_Glucose20mM with PHB-HV-HH 0.1 mg/mL

200 most important genes:

  gene name fitness t score description  
PP_4723 -8.0 -28.8 Carbamoyl-phosphate synthase large chain compare
PP_4724 -7.5 -12.9 Carbamoyl-phosphate synthase small chain compare
PP_0293 -7.3 -4.3 Imidazole glycerol phosphate synthase subunit HisF compare
PP_4999 -6.8 -4.7 dihydroorotase-like protein compare
PP_0127 -6.3 -8.5 Thiol:disulfide interchange protein compare
PP_3511 -6.3 -7.5 Branched-chain-amino-acid aminotransferase compare
PP_0787 -6.3 -4.4 quinolinate phosphoribosyltransferase (decarboxylating) monomer compare
PP_0967 -6.2 -6.1 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_1079 -6.2 -4.3 Ornithine carbamoyltransferase compare
PP_1985 -6.2 -4.2 3-isopropylmalate dehydratase large subunit compare
PP_1088 -6.1 -5.9 Argininosuccinate synthase compare
PP_1995 -5.7 -6.8 N-(5'-phosphoribosyl)anthranilate isomerase compare
PP_4909 -5.7 -5.6 phosphoserine phosphatase compare
PP_1988 -5.7 -5.6 3-isopropylmalate dehydrogenase compare
PP_4678 -5.7 -7.8 Ketol-acid reductoisomerase compare
PP_5097 -5.7 -8.7 homoserine O-acetyltransferase compare
PP_4680 -5.7 -3.9 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_4890 -5.6 -3.8 ATP phosphoribosyltransferase regulatory subunit compare
PP_1231 -5.5 -5.4 quinolinate synthase [4Fe-4S] cluster subunit compare
PP_2327 -5.4 -8.2 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_4700 -5.3 -3.7 pantothenate synthetase compare
PP_5098 -5.3 -6.3 methionine biosynthesis protein MetW compare
PP_3821 -5.3 -18.3 UTP-glucose-1-phosphate uridylyltransferase compare
PP_0965 -5.2 -11.2 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_5185 -5.0 -4.9 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_5346 -5.0 -12.8 pyruvate carboxylase subunit B compare
PP_0290 -4.9 -4.8 Imidazole glycerol phosphate synthase subunit HisH compare
PP_1986 -4.9 -3.3 3-isopropylmalate dehydratase small subunit compare
PP_0417 -4.8 -18.1 Anthranilate synthase component 1 compare
PP_0422 -4.8 -6.8 Indole-3-glycerol phosphate synthase compare
PP_5347 -4.8 -10.7 pyruvate carboxylase subunit A compare
PP_0966 -4.7 -11.5 Histidinol dehydrogenase compare
PP_5289 -4.7 -4.5 Acetylglutamate kinase compare
PP_0164 -4.6 -7.0 conserved protein of unknown function compare
PP_2371 -4.5 -3.1 Sulphite reductase hemoprotein, beta subunit compare
PP_5128 -4.5 -8.4 Dihydroxy-acid dehydratase compare
PP_0691 -4.5 -17.6 Glutamate 5-kinase compare
PP_0809 -4.4 -13.0 disulfide bond formation protein B compare
PP_5015 -4.4 -5.4 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PP_3999 -4.4 -5.2 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_5303 -4.3 -5.9 aminoacrylate/iminopropionate hydrolase/deaminase compare
PP_0420 -4.3 -13.7 aminodeoxychorismate synthase / para-aminobenzoate synthase multi-enzyme complex compare
PP_1025 -4.2 -15.2 2-isopropylmalate synthase compare
PP_0184 -4.2 -4.1 Argininosuccinate lyase compare
PP_2001 -4.2 -6.8 O-succinylhomoserine sulfhydrylase compare
PP_4940 -4.1 -5.7 Putative glycosyltransferase compare
PP_0289 -4.1 -7.2 Imidazoleglycerol-phosphate dehydratase compare
PP_0292 -4.1 -2.8 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_0082 -4.1 -2.8 tryptophan synthase alpha chain compare
PP_1233 -4.1 -10.1 sulfurtransferase compare
PP_4364 -4.0 -4.0 putative Anti-sigma F factor antagonist compare
PP_4679 -4.0 -5.5 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_0421 -4.0 -7.3 Anthranilate phosphoribosyltransferase compare
PP_0083 -4.0 -2.7 tryptophan synthase beta chain compare
PP_5104 -4.0 -12.7 thiazole synthase compare
PP_5348 -3.9 -11.7 Transcriptional regulator, LysR family compare
PP_0339 -3.8 -3.7 Pyruvate dehydrogenase E1 component compare
PP_1912 -3.7 -10.2 Phosphate acyltransferase compare
PP_2168 -3.7 -11.5 Transaldolase compare
PP_4922 -3.6 -15.8 Phosphomethylpyrimidine synthase compare
PP_1778 -3.5 -10.0 Lipopolysaccharide ABC export system, permease protein compare
PP_5014 -3.4 -2.3 Phosphoribosyl-AMP cyclohydrolase compare
PP_1664 -3.4 -6.5 phosphoribosylglycinamide formyltransferase 1 compare
PP_0366 -3.4 -10.1 dethiobiotin synthetase compare
PP_4938 -3.3 -16.4 putative Glycosyl transferase compare
PP_0362 -3.2 -12.4 Biotin synthase compare
PP_4701 -3.2 -1.1 glucose-6-phosphate isomerase compare
PP_1804 -3.2 -18.1 Glycosyl transferase WbpL compare
PP_4984 -3.2 -12.4 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
PP_2328 -3.2 -7.6 Phosphoadenosine phosphosulfate reductase compare
PP_1493 -3.2 -4.1 chemotaxis response regulator protein-glutamate methylesterase of group 3 operon compare
PP_0291 -3.2 -3.3 conserved protein of unknown function compare
PP_0363 -3.1 -13.0 8-amino-7-oxononanoate synthase compare
PP_4696 -3.1 -5.9 Nitrogen regulation protein NR(I) compare
PP_0152 -3.1 -2.5 conserved exported protein of unknown function compare
PP_1800 -3.1 -17.4 Oxidoreductase Rmd compare
PP_4936 -3.0 -12.1 O-antigen polymerase compare
PP_4699 -3.0 -6.3 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PP_0364 -2.8 -10.4 pimeloyl-[acp] methyl ester esterase compare
PP_4782 -2.8 -6.4 Phosphomethylpyrimidine kinase compare
PP_1802 -2.8 -19.4 glycosyl transferase compare
PP_1776 -2.8 -19.3 Mannose-6-phosphate isomerase/mannose-1-phosphate guanylyltransferase compare
PP_1799 -2.7 -17.3 GDP-mannose 4,6-dehydratase compare
PP_3790 -2.7 -12.5 diaminopimelate epimerase compare
PP_1801 -2.7 -15.2 Glycosyl transferase WbpY compare
PP_2000 -2.7 -2.6 amidophosphoribosyl transferase compare
PP_5155 -2.7 -2.7 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_1780 -2.7 -20.8 putative mannosyltransferase compare
PP_0365 -2.7 -9.9 Malonyl-[acyl-carrier protein] O-methyltransferase compare
PP_1805 -2.6 -19.3 Polysaccharide biosynthesis protein compare
PP_0087 -2.5 -1.8 conserved exported protein of unknown function compare
PP_2378 -2.5 -4.1 Fe/S biogenesis protein NfuA compare
PP_1348 -2.5 -6.6 putative MutT/nudix family protein/thiamine-phosphate pyrophosphorylase compare
PP_1362 -2.5 -3.7 pyruvate kinase II compare
PP_4213 -2.4 -3.5 putative dipeptidase compare
PP_1779 -2.4 -6.7 Lipopolysaccharide ABC export system, ATP-binding protein compare
PP_3484 -2.3 -5.8 Response regulator receiver protein compare
PP_0735 -2.3 -1.4 molybdopterin-synthase adenylyltransferase compare
PP_5350 -2.3 -5.5 Transcriptional regulator, RpiR family compare
PP_2370 -2.2 -2.7 conserved protein of unknown function compare
PP_1022 -2.2 -4.8 glucose 6-phosphate-1-dehydrogenase compare
PP_5095 -2.2 -5.5 pyrroline-5-carboxylate reductase compare
PP_0914 -2.2 -9.6 GGDEF domain protein compare
PP_2302 -2.2 -6.1 DNA-binding, ATP-dependent protease compare
PP_1426 -2.1 -11.8 L-aspartate oxidase compare
PP_1217 -2.1 -1.5 Holliday junction ATP-dependent DNA helicase RuvB compare
PP_4943 -2.0 -1.4 putative Glycosyl transferase compare
PP_5227 -2.0 -8.7 diaminopimelate decarboxylase compare
PP_1122 -1.9 -1.6 OmpA family protein compare
PP_4720 -1.9 -1.7 putative RNA binding protein compare
PP_3946 -1.9 -1.0 HTH-type transcriptional repressor NicR compare
PP_2510 -1.9 -2.2 conserved protein of unknown function compare
PP_2439 -1.8 -1.7 peroxiredoxin, alkylhydroperoxide reductase - small subunit compare
PP_5610 -1.7 -1.5 protein of unknown function compare
PP_0001 -1.7 -1.1 probable chromosome-partitioning protein compare
PP_4004 -1.6 -3.7 DNA translocase FtsK compare
PP_0122 -1.6 -4.2 conserved exported protein of unknown function compare
PP_4660 -1.6 -2.0 Transcriptional regulator, LysR family compare
PP_1097 -1.6 -1.6 Methionine--tRNA ligase compare
PP_3239 -1.6 -1.6 putative cointegrate resolution protein T Tn4652 compare
PP_4517 -1.5 -1.3 conserved protein of unknown function compare
PP_2414 -1.5 -1.1 conserved exported protein of unknown function compare
PP_3411 -1.5 -1.7 conserved protein of unknown function compare
PP_4804 -1.5 -4.1 RlpA-like lipoprotein compare
PP_1683 -1.5 -1.5 Transcriptional regulator, MarR family compare
PP_3417 -1.5 -4.8 D-gluconate transporter compare
PP_5331 -1.5 -3.8 Long-chain acyl-CoA thioester hydrolase compare
PP_2442 -1.5 -1.6 conserved protein of unknown function, DUF480 family compare
PP_0065 -1.4 -2.8 NAD-binding component of TrK potassium transporter compare
PP_0775 -1.4 -1.7 conserved protein of unknown function compare
PP_0195 -1.4 -1.2 conserved protein of unknown function compare
PP_3637 -1.4 -3.2 putative Sulfonate ABC transporter, ATP-binding protein compare
PP_3649 -1.4 -0.9 Transcriptional regulator, GntR family compare
PP_1763 -1.4 -2.6 putative oxidoreductase compare
PP_3506 -1.3 -4.8 Magnesium chelatase, subunit ChII compare
PP_2322 -1.3 -5.3 Major outer membrane lipoprotein compare
PP_5313 -1.3 -1.7 DNA-binding protein HU-alpha compare
PP_2499 -1.3 -0.9 conserved protein of unknown function compare
PP_2030 -1.3 -3.7 conserved protein of unknown function compare
PP_0276 -1.3 -0.7 Transcriptional regulator, Cro/CI family compare
PP_4693 -1.2 -1.9 RNA polymerase-binding transcription factor DksA compare
PP_3102 -1.2 -4.2 conserved protein of unknown function compare
PP_5487 -1.2 -2.2 conserved protein of unknown function compare
PP_4500 -1.2 -3.1 TrpH family protein compare
PP_5216 -1.2 -2.1 exopolyphosphatase compare
PP_5393 -1.2 -1.0 putative metal-binding chaperone compare
PP_4098 -1.2 -0.8 UvrABC system protein C compare
PP_5090 -1.2 -1.6 putative cell division protein compare
PP_3505 -1.2 -1.8 conserved protein of unknown function compare
PP_2336 -1.2 -2.3 aconitate hydratase 1 compare
PP_5309 -1.2 -0.8 oxidative and nitrosative stress transcriptional dual regulator compare
PP_1654 -1.2 -2.5 cysteine synthase B compare
PP_0643 -1.2 -1.8 protein of unknown function compare
PP_4828 -1.2 -0.9 Precorrin-8X methylmutase compare
PP_5248 -1.1 -0.7 putative hydrolase compare
PP_0086 -1.1 -1.7 conserved protein of unknown function compare
PP_2324 -1.1 -5.1 tyr-sensitive phospho-2-dehydro-3-deoxyheptonate aldolase compare
PP_2737 -1.1 -1.0 Oxidoreductase, short-chain dehydrogenase/reductase family compare
PP_1761 -1.1 -7.5 diguanylate cyclase with phosphodiesterase domain compare
PP_4370 -1.1 -4.0 Flagellar hook-basal body complex protein FliE compare
PP_0856 -1.1 -3.0 conserved lipoprotein of unknown function compare
PP_1656 -1.1 -4.5 ATP:GTP 3'-pyrophosphotransferase compare
PP_4684 -1.1 -5.5 conserved protein of unknown function with kinase-like domain compare
PP_5110 -1.1 -1.0 cytokinetic ring ABC transporter-like subunit - ATP-binding subunit compare
PP_t57 -1.1 -2.2 tRNA-Arg compare
PP_4961 -1.1 -1.3 putative Lipoprotein compare
PP_5499 -1.1 -1.9 conserved protein of unknown function compare
PP_0261 -1.1 -2.7 adenosine-3'(2'),5'-bisphosphate nucleotidase compare
PP_0393 -1.1 -0.7 putative 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase compare
PP_4880 -1.0 -3.7 exoribonuclease R compare
PP_0022 -1.0 -0.6 hypothetical protein compare
PP_4247 -1.0 -0.8 Exonuclease compare
PP_4507 -1.0 -6.6 potassium transporter compare
PP_4879 -1.0 -2.0 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB compare
PP_4268 -1.0 -0.9 nucleoid-associated broad specificity regulator compare
PP_2320 -1.0 -7.9 conserved exported protein of unknown function compare
PP_1304 -1.0 -5.1 sulfate adenylyltransferase subunit 1/adenylyl-sulfate kinase compare
PP_4265 -1.0 -2.2 DNA-binding transcriptional dual regulator compare
PP_4124 -1.0 -2.0 NADH-quinone oxidoreductase subunit G compare
PP_0274 -1.0 -0.6 putative transcriptional regulator containing HTH domain compare
PP_4121 -1.0 -1.6 NADH-quinone oxidoreductase subunit C/D compare
PP_1734 -1.0 -0.7 Probable septum site-determining protein MinC compare
PP_0834 -1.0 -1.7 Sec translocation complex subunit YajC compare
PP_0003 -1.0 -2.7 16S RNA methyltransferase compare
PP_0401 -1.0 -0.9 Ribosomal RNA small subunit methyltransferase A compare
PP_1009 -1.0 -2.6 glyceraldehyde-3-phosphate dehydrogenase compare
PP_1692 -1.0 -1.6 conserved protein of unknown function compare
PP_4130 -1.0 -3.4 NADH:ubiquinone oxidoreductase, membrane subunit M compare
PP_0547 -0.9 -3.5 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase compare
PP_0368 -0.9 -4.7 putative Acyl-CoA dehydrogenase compare
PP_1375 -0.9 -5.5 transcription regulatory protein (pca regulon) compare
PP_1216 -0.9 -0.8 Holliday junction ATP-dependent DNA helicase RuvA compare
PP_0833 -0.9 -1.7 queuine tRNA-ribosyltransferase compare
PP_4939 -0.9 -2.4 conserved protein of unknown function compare
PP_5693 -0.9 -3.0 conserved protein of unknown function compare
PP_5202 -0.9 -1.3 putative cell division protein compare
PP_4122 -0.9 -1.7 proton-pumping NADH:ubiquinone oxidoreductase, respiratory complex I, subunit E compare
PP_4993 -0.9 -2.7 Glutathione synthetase compare
PP_4942 -0.9 -1.3 conserved protein of unknown function compare
PP_3248 -0.9 -0.6 Dyp-type peroxidase family protein compare


Specific Phenotypes

For 1 genes in this experiment

For stress PHB-HV-HH in Pseudomonas putida KT2440

For stress PHB-HV-HH across organisms