Experiment set39IT052 for Pseudomonas putida KT2440

Compare to:

MOPS minimal media_Glucose20mM with Poly(3-hydroxybutyric acid) 0.1 mg/mL

200 most important genes:

  gene name fitness t score description  
PP_4724 -9.4 -12.3 Carbamoyl-phosphate synthase small chain compare
PP_4723 -8.7 -28.1 Carbamoyl-phosphate synthase large chain compare
PP_0293 -7.5 -4.6 Imidazole glycerol phosphate synthase subunit HisF compare
PP_4999 -7.0 -4.8 dihydroorotase-like protein compare
PP_0127 -7.0 -7.1 Thiol:disulfide interchange protein compare
PP_0787 -6.5 -4.5 quinolinate phosphoribosyltransferase (decarboxylating) monomer compare
PP_3511 -6.5 -6.3 Branched-chain-amino-acid aminotransferase compare
PP_4364 -6.5 -4.5 putative Anti-sigma F factor antagonist compare
PP_1079 -6.4 -4.4 Ornithine carbamoyltransferase compare
PP_0967 -6.3 -7.6 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_4678 -6.3 -4.3 Ketol-acid reductoisomerase compare
PP_5346 -6.1 -11.8 pyruvate carboxylase subunit B compare
PP_0966 -6.1 -8.3 Histidinol dehydrogenase compare
PP_5015 -6.0 -5.9 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PP_0691 -6.0 -13.6 Glutamate 5-kinase compare
PP_4909 -6.0 -5.8 phosphoserine phosphatase compare
PP_1985 -5.9 -5.8 3-isopropylmalate dehydratase large subunit compare
PP_1088 -5.9 -9.9 Argininosuccinate synthase compare
PP_1988 -5.9 -7.0 3-isopropylmalate dehydrogenase compare
PP_5097 -5.9 -11.3 homoserine O-acetyltransferase compare
PP_4680 -5.8 -5.7 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_4890 -5.8 -4.0 ATP phosphoribosyltransferase regulatory subunit compare
PP_5098 -5.7 -5.5 methionine biosynthesis protein MetW compare
PP_0417 -5.7 -15.6 Anthranilate synthase component 1 compare
PP_1231 -5.7 -5.5 quinolinate synthase [4Fe-4S] cluster subunit compare
PP_0422 -5.6 -6.7 Indole-3-glycerol phosphate synthase compare
PP_1995 -5.6 -8.6 N-(5'-phosphoribosyl)anthranilate isomerase compare
PP_4700 -5.6 -3.8 pantothenate synthetase compare
PP_5348 -5.5 -12.3 Transcriptional regulator, LysR family compare
PP_2327 -5.5 -9.1 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_5289 -5.4 -3.7 Acetylglutamate kinase compare
PP_2168 -5.3 -12.3 Transaldolase compare
PP_0290 -5.2 -5.1 Imidazole glycerol phosphate synthase subunit HisH compare
PP_0965 -5.1 -12.0 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_5185 -5.1 -5.0 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_3821 -5.1 -18.0 UTP-glucose-1-phosphate uridylyltransferase compare
PP_1986 -5.1 -3.5 3-isopropylmalate dehydratase small subunit compare
PP_0809 -5.0 -12.2 disulfide bond formation protein B compare
PP_4679 -5.0 -4.8 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_5347 -4.9 -11.5 pyruvate carboxylase subunit A compare
PP_5303 -4.8 -5.7 aminoacrylate/iminopropionate hydrolase/deaminase compare
PP_2371 -4.8 -3.3 Sulphite reductase hemoprotein, beta subunit compare
PP_2001 -4.7 -7.8 O-succinylhomoserine sulfhydrylase compare
PP_0420 -4.6 -13.9 aminodeoxychorismate synthase / para-aminobenzoate synthase multi-enzyme complex compare
PP_0184 -4.6 -3.2 Argininosuccinate lyase compare
PP_0421 -4.5 -8.7 Anthranilate phosphoribosyltransferase compare
PP_3999 -4.5 -6.1 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_5128 -4.4 -7.8 Dihydroxy-acid dehydratase compare
PP_0292 -4.3 -3.0 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_0082 -4.3 -3.0 tryptophan synthase alpha chain compare
PP_1568 -4.3 -1.5 conserved protein of unknown function compare
PP_0164 -4.2 -8.5 conserved protein of unknown function compare
PP_0083 -4.2 -2.9 tryptophan synthase beta chain compare
PP_4696 -4.1 -5.5 Nitrogen regulation protein NR(I) compare
PP_0339 -4.0 -2.8 Pyruvate dehydrogenase E1 component compare
PP_0366 -4.0 -8.4 dethiobiotin synthetase compare
PP_0289 -4.0 -6.1 Imidazoleglycerol-phosphate dehydratase compare
PP_5104 -3.9 -10.5 thiazole synthase compare
PP_1025 -3.8 -12.1 2-isopropylmalate synthase compare
PP_0735 -3.5 -1.8 molybdopterin-synthase adenylyltransferase compare
PP_0362 -3.4 -10.9 Biotin synthase compare
PP_5014 -3.4 -3.3 Phosphoribosyl-AMP cyclohydrolase compare
PP_4940 -3.4 -8.6 Putative glycosyltransferase compare
PP_2000 -3.4 -2.3 amidophosphoribosyl transferase compare
PP_5155 -3.4 -3.9 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_4984 -3.3 -13.0 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
PP_1233 -3.3 -10.3 sulfurtransferase compare
PP_4699 -3.2 -6.5 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PP_4782 -3.2 -6.9 Phosphomethylpyrimidine kinase compare
PP_0364 -3.2 -14.0 pimeloyl-[acp] methyl ester esterase compare
PP_0363 -3.1 -15.0 8-amino-7-oxononanoate synthase compare
PP_0365 -3.1 -13.0 Malonyl-[acyl-carrier protein] O-methyltransferase compare
PP_1664 -2.9 -7.2 phosphoribosylglycinamide formyltransferase 1 compare
PP_0291 -2.8 -3.2 conserved protein of unknown function compare
PP_2328 -2.8 -8.5 Phosphoadenosine phosphosulfate reductase compare
PP_2370 -2.7 -3.2 conserved protein of unknown function compare
PP_1493 -2.7 -4.7 chemotaxis response regulator protein-glutamate methylesterase of group 3 operon compare
PP_4922 -2.6 -15.1 Phosphomethylpyrimidine synthase compare
PP_5095 -2.6 -9.2 pyrroline-5-carboxylate reductase compare
PP_1912 -2.6 -7.7 Phosphate acyltransferase compare
PP_1362 -2.5 -4.2 pyruvate kinase II compare
PP_2414 -2.5 -3.3 conserved exported protein of unknown function compare
PP_2337 -2.5 -2.9 aconitate isomerase compare
PP_3790 -2.4 -12.8 diaminopimelate epimerase compare
PP_1426 -2.4 -12.7 L-aspartate oxidase compare
PP_1022 -2.4 -4.9 glucose 6-phosphate-1-dehydrogenase compare
PP_4099 -2.3 -19.4 two-componenent system BarA/UvrY - regulatory subunit compare
PP_1348 -2.3 -6.5 putative MutT/nudix family protein/thiamine-phosphate pyrophosphorylase compare
PP_4943 -2.2 -1.5 putative Glycosyl transferase compare
PP_3484 -2.2 -6.0 Response regulator receiver protein compare
PP_4910 -2.2 -1.5 conserved protein of unknown function compare
PP_5227 -2.2 -9.8 diaminopimelate decarboxylase compare
PP_0276 -2.2 -1.1 Transcriptional regulator, Cro/CI family compare
PP_4874 -2.2 -1.5 50S ribosomal protein L9 compare
PP_5571 -2.1 -1.4 conserved protein of unknown function compare
PP_4004 -2.0 -5.2 DNA translocase FtsK compare
PP_3946 -2.0 -1.7 HTH-type transcriptional repressor NicR compare
PP_1650 -2.0 -10.2 Sensor protein GacS compare
PP_0377 -1.9 -1.8 coenzyme PQQ synthesis protein D compare
PP_4942 -1.9 -2.5 conserved protein of unknown function compare
PP_5350 -1.9 -4.9 Transcriptional regulator, RpiR family compare
PP_0513 -1.9 -1.2 DNA-binding transcriptional repressor NrdR-Zn2+-ATP/dATP compare
PP_1778 -1.8 -6.8 Lipopolysaccharide ABC export system, permease protein compare
PP_1656 -1.8 -5.9 ATP:GTP 3'-pyrophosphotransferase compare
PP_4701 -1.8 -0.9 glucose-6-phosphate isomerase compare
PP_0914 -1.8 -8.4 GGDEF domain protein compare
PP_0065 -1.8 -3.2 NAD-binding component of TrK potassium transporter compare
PP_1217 -1.8 -2.1 Holliday junction ATP-dependent DNA helicase RuvB compare
PP_1779 -1.8 -7.1 Lipopolysaccharide ABC export system, ATP-binding protein compare
PP_4938 -1.7 -9.7 putative Glycosyl transferase compare
PP_3411 -1.7 -2.1 conserved protein of unknown function compare
PP_4684 -1.7 -8.7 conserved protein of unknown function with kinase-like domain compare
PP_4936 -1.7 -7.8 O-antigen polymerase compare
PP_5000 -1.6 -1.2 peptidase component of the ATP-dependent HslVU protease compare
PP_0846 -1.6 -1.1 DnaK-like molecular chaperone specific for IscU compare
PP_5331 -1.6 -5.6 Long-chain acyl-CoA thioester hydrolase compare
PP_1804 -1.5 -10.7 Glycosyl transferase WbpL compare
PP_1780 -1.5 -13.2 putative mannosyltransferase compare
PP_1776 -1.5 -11.9 Mannose-6-phosphate isomerase/mannose-1-phosphate guanylyltransferase compare
PP_3649 -1.5 -1.0 Transcriptional regulator, GntR family compare
PP_1802 -1.5 -12.3 glycosyl transferase compare
PP_0856 -1.5 -3.8 conserved lipoprotein of unknown function compare
PP_1468 -1.5 -2.6 Tyrosine recombinase XerD compare
PP_3417 -1.5 -4.7 D-gluconate transporter compare
PP_5054 -1.5 -1.8 glutaredoxin 3 compare
PP_1366 -1.4 -2.9 Transcriptional regulator MvaT, P16 subunit compare
PP_1799 -1.4 -10.4 GDP-mannose 4,6-dehydratase compare
PP_2633 -1.4 -1.5 conserved protein of unknown function compare
PP_2061 -1.4 -1.7 conserved protein of unknown function compare
PP_1801 -1.4 -9.6 Glycosyl transferase WbpY compare
PP_2442 -1.4 -1.7 conserved protein of unknown function, DUF480 family compare
PP_5309 -1.4 -0.9 oxidative and nitrosative stress transcriptional dual regulator compare
PP_2439 -1.4 -2.1 peroxiredoxin, alkylhydroperoxide reductase - small subunit compare
PP_4098 -1.4 -0.9 UvrABC system protein C compare
PP_1800 -1.4 -9.3 Oxidoreductase Rmd compare
PP_4500 -1.4 -3.8 TrpH family protein compare
PP_2378 -1.4 -2.9 Fe/S biogenesis protein NfuA compare
PP_4196 -1.4 -1.3 conserved exported protein of unknown function compare
PP_0122 -1.3 -4.1 conserved exported protein of unknown function compare
PP_4693 -1.3 -2.4 RNA polymerase-binding transcription factor DksA compare
PP_1805 -1.3 -11.0 Polysaccharide biosynthesis protein compare
PP_2031 -1.3 -1.1 conserved protein of unknown function compare
PP_2336 -1.3 -2.6 aconitate hydratase 1 compare
PP_1198 -1.3 -2.7 transcriptional regulator, Cro/CI family (higA antitoxin like) compare
PP_3551 -1.3 -1.1 DNA-binding response regulator, LuxR family compare
PP_4130 -1.3 -4.3 NADH:ubiquinone oxidoreductase, membrane subunit M compare
PP_0379 -1.3 -6.1 Coenzyme PQQ synthesis protein B compare
PP_0274 -1.3 -0.9 putative transcriptional regulator containing HTH domain compare
PP_1216 -1.3 -1.1 Holliday junction ATP-dependent DNA helicase RuvA compare
PP_4363 -1.2 -7.1 Sensor histidine kinase/response regulator compare
PP_1237 -1.2 -1.0 4-hydroxy-tetrahydrodipicolinate synthase compare
PP_3808 -1.2 -0.8 Antibiotic synthesis protein MbtH compare
PP_2390 -1.2 -5.3 Transcriptional regulator, LysR family compare
PP_0381 -1.2 -5.4 Coenzyme PQQ synthesis protein F compare
PP_5216 -1.2 -2.6 exopolyphosphatase compare
PP_5486 -1.2 -3.0 conserved protein of unknown function compare
PP_1322 -1.2 -1.1 putative Lipoprotein compare
PP_2820 -1.2 -2.9 HTH-type transcriptional regulator nfxB compare
PP_3935 -1.2 -2.1 conserved protein of unknown function compare
PP_2429 -1.1 -2.1 putative Membrane protein compare
PP_4213 -1.1 -2.1 putative dipeptidase compare
PP_0368 -1.1 -6.5 putative Acyl-CoA dehydrogenase compare
PP_0393 -1.1 -1.1 putative 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase compare
PP_5393 -1.1 -0.8 putative metal-binding chaperone compare
PP_3637 -1.1 -3.0 putative Sulfonate ABC transporter, ATP-binding protein compare
PP_4122 -1.1 -2.1 proton-pumping NADH:ubiquinone oxidoreductase, respiratory complex I, subunit E compare
PP_0152 -1.1 -0.9 conserved exported protein of unknown function compare
PP_5203 -1.0 -5.0 5-formyltetrahydrofolate cyclo-ligase compare
PP_2737 -1.0 -1.1 Oxidoreductase, short-chain dehydrogenase/reductase family compare
PP_2348 -1.0 -2.9 Sensor histidine kinase compare
PP_2302 -1.0 -4.3 DNA-binding, ATP-dependent protease compare
PP_5505 -1.0 -2.6 conserved transmembrane protein of unknown function compare
PP_0963 -1.0 -2.1 putative BolA family protein compare
PP_0195 -1.0 -1.0 conserved protein of unknown function compare
PP_3105 -1.0 -1.4 conserved membrane protein of unknown function compare
PP_4929 -1.0 -2.2 Transcriptional regulator, LysR family compare
PP_1654 -1.0 -2.6 cysteine synthase B compare
PP_1428 -1.0 -2.4 Sigma factor AlgU negative regulatory protein compare
PP_3539 -1.0 -1.9 putative Transcriptional regulator compare
PP_t57 -1.0 -2.1 tRNA-Arg compare
PP_4961 -1.0 -1.3 putative Lipoprotein compare
PP_5093 -0.9 -0.5 twitching motility protein compare
PP_4575 -0.9 -2.7 Urea amidolyase-related protein compare
PP_2631 -0.9 -1.2 putative cellulose biosynthesis, BcsF/YhjT compare
PP_4964 -0.9 -1.1 D-erythrose 4-phosphate dehydrogenase compare
PP_3443 -0.9 -5.9 putative glyceraldehyde-3-phosphate dehydrogenase compare
PP_4804 -0.9 -3.0 RlpA-like lipoprotein compare
PP_5073 -0.9 -1.7 conserved exported protein of unknown function compare
PP_4832 -0.9 -3.6 Precorrin-6x reductase compare
PP_5652 -0.9 -1.3 conserved protein of unknown function, phage origin compare
PP_1004 -0.9 -1.5 conserved protein of unknown function compare
PP_4507 -0.9 -6.2 potassium transporter compare
PP_1054 -0.9 -0.7 Type II secretion pathway protein XcpZ compare
PP_4799 -0.9 -0.6 putative Muramoyltetrapeptide carboxypeptidase compare
PP_5456 -0.9 -0.6 conserved protein of unknown function compare
PP_4584 -0.9 -2.5 putative endonuclease compare
PP_4880 -0.9 -3.5 exoribonuclease R compare
PP_4124 -0.9 -2.2 NADH-quinone oxidoreductase subunit G compare
PP_2274 -0.9 -3.2 conserved protein of unknown function compare
PP_4939 -0.9 -3.2 conserved protein of unknown function compare


Specific Phenotypes

None in this experiment

For Pseudomonas putida KT2440 in stress experiments

For stress Poly(3-hydroxybutyric acid) across organisms