Experiment set39IT051 for Pseudomonas putida KT2440

Compare to:

MOPS minimal media_Glucose20mM with Poly(3-hydroxybutyric acid) 0.1 mg/mL

200 most important genes:

  gene name fitness t score description  
PP_4724 -11.8 -14.0 Carbamoyl-phosphate synthase small chain compare
PP_4723 -9.1 -26.9 Carbamoyl-phosphate synthase large chain compare
PP_0293 -7.5 -4.6 Imidazole glycerol phosphate synthase subunit HisF compare
PP_4999 -7.0 -4.8 dihydroorotase-like protein compare
PP_0127 -6.5 -9.1 Thiol:disulfide interchange protein compare
PP_4364 -6.5 -4.5 putative Anti-sigma F factor antagonist compare
PP_1079 -6.4 -4.4 Ornithine carbamoyltransferase compare
PP_1985 -6.4 -4.4 3-isopropylmalate dehydratase large subunit compare
PP_0966 -6.3 -4.4 Histidinol dehydrogenase compare
PP_1988 -6.3 -4.4 3-isopropylmalate dehydrogenase compare
PP_1995 -6.3 -6.1 N-(5'-phosphoribosyl)anthranilate isomerase compare
PP_4678 -6.3 -4.3 Ketol-acid reductoisomerase compare
PP_4909 -6.1 -4.2 phosphoserine phosphatase compare
PP_1088 -6.0 -9.2 Argininosuccinate synthase compare
PP_5097 -6.0 -8.2 homoserine O-acetyltransferase compare
PP_0967 -6.0 -8.2 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_3511 -5.8 -8.9 Branched-chain-amino-acid aminotransferase compare
PP_5015 -5.8 -5.5 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PP_2001 -5.8 -9.7 O-succinylhomoserine sulfhydrylase compare
PP_0417 -5.7 -15.3 Anthranilate synthase component 1 compare
PP_5098 -5.7 -5.6 methionine biosynthesis protein MetW compare
PP_4680 -5.7 -6.8 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_0965 -5.7 -12.1 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_4700 -5.6 -3.8 pantothenate synthetase compare
PP_5346 -5.6 -12.9 pyruvate carboxylase subunit B compare
PP_1231 -5.5 -5.4 quinolinate synthase [4Fe-4S] cluster subunit compare
PP_5347 -5.4 -9.0 pyruvate carboxylase subunit A compare
PP_5289 -5.4 -3.7 Acetylglutamate kinase compare
PP_0420 -5.4 -11.5 aminodeoxychorismate synthase / para-aminobenzoate synthase multi-enzyme complex compare
PP_2168 -5.3 -10.3 Transaldolase compare
PP_0422 -5.3 -7.6 Indole-3-glycerol phosphate synthase compare
PP_0290 -5.3 -3.7 Imidazole glycerol phosphate synthase subunit HisH compare
PP_0809 -5.3 -11.8 disulfide bond formation protein B compare
PP_2327 -5.2 -9.4 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_3821 -5.2 -19.8 UTP-glucose-1-phosphate uridylyltransferase compare
PP_5348 -5.2 -13.3 Transcriptional regulator, LysR family compare
PP_5303 -5.1 -5.0 aminoacrylate/iminopropionate hydrolase/deaminase compare
PP_0691 -5.1 -12.8 Glutamate 5-kinase compare
PP_1986 -5.1 -3.5 3-isopropylmalate dehydratase small subunit compare
PP_5185 -5.1 -4.9 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_0787 -5.0 -5.1 quinolinate phosphoribosyltransferase (decarboxylating) monomer compare
PP_4890 -5.0 -4.8 ATP phosphoribosyltransferase regulatory subunit compare
PP_0164 -4.8 -6.6 conserved protein of unknown function compare
PP_4679 -4.6 -4.5 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_0184 -4.6 -3.2 Argininosuccinate lyase compare
PP_3999 -4.5 -5.4 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_0292 -4.3 -3.0 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_0082 -4.3 -2.9 tryptophan synthase alpha chain compare
PP_4696 -4.2 -5.0 Nitrogen regulation protein NR(I) compare
PP_0083 -4.2 -2.9 tryptophan synthase beta chain compare
PP_0421 -4.2 -6.8 Anthranilate phosphoribosyltransferase compare
PP_0289 -4.2 -6.5 Imidazoleglycerol-phosphate dehydratase compare
PP_2371 -4.1 -6.3 Sulphite reductase hemoprotein, beta subunit compare
PP_0339 -4.0 -2.8 Pyruvate dehydrogenase E1 component compare
PP_5155 -4.0 -4.8 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_5104 -3.9 -11.8 thiazole synthase compare
PP_1493 -3.8 -5.8 chemotaxis response regulator protein-glutamate methylesterase of group 3 operon compare
PP_5128 -3.8 -6.1 Dihydroxy-acid dehydratase compare
PP_0291 -3.7 -4.0 conserved protein of unknown function compare
PP_0362 -3.7 -12.9 Biotin synthase compare
PP_2370 -3.6 -2.5 conserved protein of unknown function compare
PP_1025 -3.5 -11.2 2-isopropylmalate synthase compare
PP_4940 -3.5 -11.4 Putative glycosyltransferase compare
PP_4782 -3.4 -7.6 Phosphomethylpyrimidine kinase compare
PP_4984 -3.3 -13.0 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
PP_0366 -3.2 -11.4 dethiobiotin synthetase compare
PP_1233 -3.1 -8.4 sulfurtransferase compare
PP_0365 -3.0 -9.0 Malonyl-[acyl-carrier protein] O-methyltransferase compare
PP_1664 -3.0 -6.4 phosphoribosylglycinamide formyltransferase 1 compare
PP_5095 -3.0 -7.6 pyrroline-5-carboxylate reductase compare
PP_4922 -2.9 -15.1 Phosphomethylpyrimidine synthase compare
PP_3790 -2.9 -13.7 diaminopimelate epimerase compare
PP_0363 -2.8 -13.3 8-amino-7-oxononanoate synthase compare
PP_5014 -2.8 -2.7 Phosphoribosyl-AMP cyclohydrolase compare
PP_0846 -2.7 -1.9 DnaK-like molecular chaperone specific for IscU compare
PP_0364 -2.7 -11.8 pimeloyl-[acp] methyl ester esterase compare
PP_1362 -2.6 -4.9 pyruvate kinase II compare
PP_2328 -2.5 -7.2 Phosphoadenosine phosphosulfate reductase compare
PP_0735 -2.5 -1.7 molybdopterin-synthase adenylyltransferase compare
PP_1912 -2.5 -7.2 Phosphate acyltransferase compare
PP_2000 -2.4 -2.8 amidophosphoribosyl transferase compare
PP_1022 -2.4 -4.8 glucose 6-phosphate-1-dehydrogenase compare
PP_2414 -2.2 -2.9 conserved exported protein of unknown function compare
PP_4870 -2.2 -2.9 Azurin compare
PP_4943 -2.2 -1.5 putative Glycosyl transferase compare
PP_3519 -2.0 -1.0 putative Lipoprotein compare
PP_1348 -2.0 -5.7 putative MutT/nudix family protein/thiamine-phosphate pyrophosphorylase compare
PP_5350 -2.0 -5.3 Transcriptional regulator, RpiR family compare
PP_0856 -1.9 -3.8 conserved lipoprotein of unknown function compare
PP_4004 -1.9 -4.6 DNA translocase FtsK compare
PP_1656 -1.9 -5.6 ATP:GTP 3'-pyrophosphotransferase compare
PP_1426 -1.9 -9.7 L-aspartate oxidase compare
PP_2402 -1.8 -2.1 putative Sensor histidine kinase compare
PP_0719 -1.8 -1.2 ribosome-associated potassium-dependent informational ATP/GTPase compare
PP_0914 -1.8 -8.5 GGDEF domain protein compare
PP_2439 -1.8 -2.1 peroxiredoxin, alkylhydroperoxide reductase - small subunit compare
PP_4701 -1.8 -0.9 glucose-6-phosphate isomerase compare
PP_3417 -1.8 -5.4 D-gluconate transporter compare
PP_4699 -1.8 -4.8 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PP_3105 -1.7 -2.0 conserved membrane protein of unknown function compare
PP_5331 -1.7 -4.9 Long-chain acyl-CoA thioester hydrolase compare
PP_3484 -1.7 -3.5 Response regulator receiver protein compare
PP_3378 -1.7 -1.3 putative 2-ketogluconokinase compare
PP_1629 -1.6 -4.1 Protein RecA compare
PP_2820 -1.5 -3.5 HTH-type transcriptional regulator nfxB compare
PP_2700 -1.5 -2.0 AhpC/TSA family protein compare
PP_3649 -1.5 -1.0 Transcriptional regulator, GntR family compare
PP_4938 -1.5 -6.8 putative Glycosyl transferase compare
PP_0122 -1.5 -3.8 conserved exported protein of unknown function compare
PP_1654 -1.5 -3.5 cysteine synthase B compare
PP_2302 -1.4 -5.6 DNA-binding, ATP-dependent protease compare
PP_1783 -1.4 -0.9 dTDP-glucose pyrophosphorylase compare
PP_3637 -1.4 -3.5 putative Sulfonate ABC transporter, ATP-binding protein compare
PP_4936 -1.4 -5.8 O-antigen polymerase compare
PP_4098 -1.4 -0.9 UvrABC system protein C compare
PP_5309 -1.4 -0.9 oxidative and nitrosative stress transcriptional dual regulator compare
PP_2581 -1.4 -1.4 conserved protein of unknown function compare
PP_4099 -1.4 -12.8 two-componenent system BarA/UvrY - regulatory subunit compare
PP_5227 -1.3 -6.4 diaminopimelate decarboxylase compare
PP_4804 -1.3 -4.4 RlpA-like lipoprotein compare
PP_1468 -1.3 -2.5 Tyrosine recombinase XerD compare
PP_0888 -1.3 -2.1 Photosynthetic apparatus regulatory protein RegA compare
PP_4684 -1.3 -6.6 conserved protein of unknown function with kinase-like domain compare
PP_2575 -1.3 -1.6 conserved exported protein of unknown function compare
PP_4121 -1.3 -1.7 NADH-quinone oxidoreductase subunit C/D compare
PP_2878 -1.3 -1.1 conserved protein of unknown function compare
PP_0393 -1.3 -0.9 putative 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase compare
PP_2060 -1.2 -1.7 DNA-binding transcriptional dual regulator - SoxR-reversible one-electron oxidation of its [2Fe-2S] cluster, NADPH-dependent compare
PP_2136 -1.2 -4.1 enoyl-CoA hydratase/3-hydroxyacyl-CoA dehydrogenase compare
PP_4130 -1.2 -4.4 NADH:ubiquinone oxidoreductase, membrane subunit M compare
PP_4500 -1.2 -3.6 TrpH family protein compare
PP_5202 -1.2 -1.4 putative cell division protein compare
PP_2390 -1.2 -5.0 Transcriptional regulator, LysR family compare
PP_2388 -1.2 -3.0 Transporter, LysE family compare
PP_t12 -1.1 -0.6 tRNA-Thr compare
PP_0874 -1.1 -1.6 conserved protein of unknown function compare
PP_1216 -1.1 -1.0 Holliday junction ATP-dependent DNA helicase RuvA compare
PP_1217 -1.1 -2.0 Holliday junction ATP-dependent DNA helicase RuvB compare
PP_0368 -1.1 -6.8 putative Acyl-CoA dehydrogenase compare
PP_5054 -1.1 -1.6 glutaredoxin 3 compare
PP_4828 -1.1 -1.2 Precorrin-8X methylmutase compare
PP_4213 -1.1 -2.5 putative dipeptidase compare
PP_4829 -1.1 -2.6 putative precorrin-3B synthase compare
PP_3443 -1.1 -6.8 putative glyceraldehyde-3-phosphate dehydrogenase compare
PP_2725 -1.1 -2.0 Protease PfpI compare
PP_0065 -1.1 -2.6 NAD-binding component of TrK potassium transporter compare
PP_2499 -1.1 -0.8 conserved protein of unknown function compare
PP_3938 -1.0 -1.2 conserved protein of unknown function compare
PP_5393 -1.0 -1.0 putative metal-binding chaperone compare
PP_5216 -1.0 -1.9 exopolyphosphatase compare
PP_0152 -1.0 -0.9 conserved exported protein of unknown function compare
PP_0593 -1.0 -0.6 putative ribosome-binding factor compare
PP_0381 -1.0 -4.4 Coenzyme PQQ synthesis protein F compare
PP_1650 -1.0 -6.4 Sensor protein GacS compare
PP_0035 -1.0 -1.8 putative bactoprenol-linked glycose transferase compare
PP_1303 -1.0 -4.8 Sulfate adenylyltransferase subunit 2 compare
PP_0775 -1.0 -1.4 conserved protein of unknown function compare
PP_3248 -1.0 -0.7 Dyp-type peroxidase family protein compare
PP_2568 -1.0 -0.9 Ring-cleaving dioxygenase compare
PP_1779 -1.0 -4.4 Lipopolysaccharide ABC export system, ATP-binding protein compare
PP_2378 -1.0 -2.8 Fe/S biogenesis protein NfuA compare
PP_2336 -1.0 -2.4 aconitate hydratase 1 compare
PP_4693 -1.0 -2.5 RNA polymerase-binding transcription factor DksA compare
PP_0276 -1.0 -0.7 Transcriptional regulator, Cro/CI family compare
PP_4917 -1.0 -3.1 3',5'-cyclic-nucleotide phosphodiesterase compare
PP_3102 -1.0 -2.6 conserved protein of unknown function compare
PP_1994 -1.0 -1.8 tRNA pseudouridine (38-40)synthase compare
PP_2030 -1.0 -3.5 conserved protein of unknown function compare
PP_2475 -0.9 -3.2 Transcriptional regulator, TetR family compare
PP_5315 -0.9 -2.2 Rubredoxin-1 compare
PP_4660 -0.9 -1.3 Transcriptional regulator, LysR family compare
PP_5598 -0.9 -1.5 conserved protein of unknown function compare
PP_2087 -0.9 -1.6 CmpX protein compare
PP_1428 -0.9 -2.5 Sigma factor AlgU negative regulatory protein compare
PP_1142 -0.9 -1.2 conserved protein of unknown function compare
PP_4126 -0.9 -1.6 NADH-quinone oxidoreductase subunit I compare
PP_5317 -0.9 -2.1 Probable chorismate pyruvate-lyase compare
PP_2044 -0.9 -1.3 conserved inner membrane protein of unknown function compare
PP_1366 -0.9 -1.9 Transcriptional regulator MvaT, P16 subunit compare
PP_1776 -0.9 -7.6 Mannose-6-phosphate isomerase/mannose-1-phosphate guanylyltransferase compare
PP_1800 -0.9 -6.2 Oxidoreductase Rmd compare
PP_5035 -0.9 -4.5 Histidine utilization repressor compare
PP_1761 -0.9 -6.3 diguanylate cyclase with phosphodiesterase domain compare
PP_2429 -0.9 -1.2 putative Membrane protein compare
PP_5203 -0.9 -5.0 5-formyltetrahydrofolate cyclo-ligase compare
PP_4799 -0.9 -0.6 putative Muramoyltetrapeptide carboxypeptidase compare
PP_1011 -0.9 -4.6 glucokinase compare
PP_3789 -0.9 -3.6 putative Efflux transporter compare
PP_1778 -0.9 -3.6 Lipopolysaccharide ABC export system, permease protein compare
PP_3603 -0.9 -4.1 Transcriptional regulator, GntR family compare
PP_1804 -0.9 -6.5 Glycosyl transferase WbpL compare
PP_1802 -0.9 -7.3 glycosyl transferase compare
PP_0377 -0.9 -0.9 coenzyme PQQ synthesis protein D compare
PP_1733 -0.9 -0.6 membrane ATPase of the MinC-MinD-MinE system compare
PP_3411 -0.9 -1.3 conserved protein of unknown function compare
PP_4363 -0.9 -5.3 Sensor histidine kinase/response regulator compare
PP_4824 -0.9 -3.8 Sensor histidine kinase/response regulator compare
PP_5114 -0.9 -0.6 putative adenine methyltransferase compare
PP_5748 -0.9 -1.8 cytochrome c heme lyase subunit compare
PP_2655 -0.9 -1.4 conserved protein of unknown function compare


Specific Phenotypes

None in this experiment

For Pseudomonas putida KT2440 in stress experiments

For stress Poly(3-hydroxybutyric acid) across organisms