Experiment set39IT051 for Pseudomonas putida KT2440

Compare to:

MOPS minimal media_Glucose20mM with Poly(3-hydroxybutyric acid) 0.1 mg/mL

200 most detrimental genes:

  gene name fitness t score description  
PP_4593 +2.3 3.9 conserved protein of unknown function compare
PP_5093 +1.6 1.5 twitching motility protein compare
PP_4720 +1.5 3.8 putative RNA binding protein compare
PP_4874 +1.3 1.9 50S ribosomal protein L9 compare
PP_0948 +1.2 4.9 Phosphocarrier protein HPr compare
PP_1445 +1.1 6.7 carbohydrate-selective porin compare
PP_0607 +1.1 3.1 putative Type IV pili biogenesis protein FimT compare
PP_0001 +1.1 1.7 probable chromosome-partitioning protein compare
PP_4254 +1.0 1.2 conserved protein of unknown function compare
PP_3810 +1.0 2.2 conserved protein of unknown function compare
PP_5145 +1.0 8.4 phosphoenolpyruvate-dependent regulator (with NPR and NTR proteins) compare
PP_4262 +0.9 2.4 Cytochrome oxidase maturation protein, cbb3-type compare
PP_5441 +0.9 2.2 protein of unknown function compare
PP_1513 +0.9 3.0 Ribosomal RNA small subunit methyltransferase J compare
PP_5705 +0.9 1.8 protein of unknown function compare
PP_5110 +0.9 1.5 cytokinetic ring ABC transporter-like subunit - ATP-binding subunit compare
PP_5038 +0.9 2.5 conserved lipoprotein of unknown function compare
PP_4768 +0.9 2.6 Exonuclease compare
PP_0957 +0.8 1.5 D-arabinose 5-phosphate isomerase compare
PP_0313 +0.8 2.3 putative electron transfer flavoprotein beta subunit compare
PP_0240 +0.8 1.9 Aliphatic sulfonates import ATP-binding protein SsuB compare
PP_5483 +0.8 1.3 conserved protein of unknown function compare
PP_0232 +0.8 0.9 ATP-binding taurine transporter subunit compare
PP_2999 +0.8 0.7 Glyoxalase family protein compare
PP_1113 +0.8 5.0 Pyridoxal-phosphate dependent enzyme family protein compare
PP_1938 +0.8 1.4 conserved protein of unknown function compare
PP_2319 +0.8 2.6 conserved protein of unknown function compare
PP_4997 +0.8 0.9 pyrimidine operon regulatory protein/uracil phosphoribosyltransferase compare
PP_2640 +0.8 2.3 Acetyltransferase, GNAT family compare
PP_2889 +0.8 3.9 putative Transmembrane regulator PrtR compare
PP_4642 +0.8 0.6 Cyclic diguanosine monophosphate-binding protein compare
PP_4373 +0.7 5.7 Transcriptional regulator FleQ compare
PP_4301 +0.7 2.2 Pyruvate kinase compare
PP_5588 +0.7 3.3 conserved protein of unknown function compare
PP_1328 +0.7 1.5 Protein MraZ compare
PP_5248 +0.7 1.0 putative hydrolase compare
PP_1473 +0.7 2.4 conserved protein of unknown function compare
PP_1646 +0.7 3.5 putative Thioredoxin compare
PP_2650 +0.7 1.2 putative 4-hydroxybutyrate dehydrogenase compare
PP_0306 +0.7 1.4 conserved protein of unknown function compare
PP_0666 +0.7 2.4 conserved protein of unknown function compare
PP_4171 +0.7 5.2 conserved exported protein of unknown function compare
PP_2776 +0.7 1.5 Homocysteine S-methyltransferase family protein compare
PP_4133 +0.6 0.8 Transcriptional regulator-related protein compare
PP_3043 +0.6 1.2 conserved protein of unknown function compare
PP_4094 +0.6 1.5 conserved protein of unknown function compare
PP_4247 +0.6 0.9 Exonuclease compare
PP_4258 +0.6 3.4 cytochrome c oxidase subunit, cbb3-type compare
PP_3392 +0.6 0.7 conserved protein of unknown function compare
PP_4952 +0.6 0.8 ATP-dependent RNA helicase, specific for 23S rRNA compare
PP_3323 +0.6 2.4 CobW/P47K family protein compare
PP_5167 +0.6 2.6 conserved hypothetical protein compare
PP_0905 +0.6 0.5 conserved exported protein of unknown function compare
PP_3122 +0.6 2.7 acetoacetyl CoA-transferase (subunit A) compare
PP_5537 +0.6 1.5 conserved membrane protein of unknown function compare
PP_4018 +0.6 1.8 Acetyltransferase, GNAT family compare
PP_0893 +0.6 1.9 ThiJ/PfpI family protein compare
PP_1628 +0.6 2.1 NMN amidohydrolase compare
PP_4785 +0.6 3.9 conserved exported protein of unknown function compare
PP_3037 +0.6 1.1 C4-type zinc finger protein, DksA/TraR family compare
PP_2695 +0.6 1.4 Transcriptional regulator, LysR family compare
PP_3903 +0.6 1.2 conserved protein of unknown function compare
PP_1138 +0.6 2.3 branched chain amino acid transporter - ATP binding subunit compare
PP_0852 +0.6 1.2 Transcriptional regulator, Cro/CI family compare
PP_0126 +0.6 1.6 Cytochrome c4 compare
PP_2189 +0.6 1.3 conserved protein of unknown function compare
PP_1556 +0.6 1.7 conserved protein of unknown function compare
PP_5042 +0.6 2.2 conserved protein of unknown function compare
PP_0900 +0.6 1.7 PAP2 family protein compare
PP_1651 +0.6 2.5 two-component response regulator compare
PP_1404 +0.5 1.1 conserved protein of unknown function compare
PP_0439 +0.5 2.5 conserved protein of unknown function compare
PP_1774 +0.5 1.1 conserved exported protein of unknown function compare
PP_3773 +0.5 2.1 conserved protein of unknown function compare
PP_2784 +0.5 1.4 Oxidoreductase, short-chain dehydrogenase/reductase family compare
PP_1645 +0.5 3.0 putative enzyme compare
PP_4808 +0.5 1.5 23S rRNA m3psi1915 methyltransferase compare
PP_2593 +0.5 2.0 Ferric siderophore ABC transporter, permease protein compare
PP_5701 +0.5 1.8 conserved protein of unknown function compare
PP_5107 +0.5 1.8 Monofunctional biosynthetic peptidoglycan transglycosylase compare
PP_0971 +0.5 2.4 conserved protein of unknown function compare
PP_4629 +0.5 2.4 Sensory box protein compare
PP_0307 +0.5 2.1 conserved exported protein of unknown function compare
PP_4844 +0.5 1.1 putative Urea ABC transporter, ATP-binding protein compare
PP_2132 +0.5 1.3 Universal stress protein compare
PP_2921 +0.5 2.2 conserved protein of unknown function compare
PP_2880 +0.5 1.0 Transcriptional regulator, TetR family compare
PP_4989 +0.5 1.2 Protein PilJ compare
PP_4009 +0.5 2.1 ATP-dependent Clp protease adapter protein ClpS compare
PP_4419 +0.5 1.6 transposase compare
PP_2313 +0.5 1.3 conserved membrane protein of unknown function compare
PP_3846 +0.5 3.2 (R)-stereoselective amidase compare
PP_2299 +0.5 1.7 Trigger factor compare
PP_4762 +0.5 2.0 Acyl-CoA thioesterase II compare
PP_2857 +0.5 1.3 conserved exported protein of unknown function compare
PP_2729 +0.5 2.1 conserved protein of unknown function compare
PP_2090 +0.5 1.2 Uroporphyrinogen-III C-methyltransferase compare
PP_0058 +0.5 4.3 putative 1-acyl-sn-glycerol-3-phosphate acyltransferase compare
PP_5528 +0.5 0.8 conserved protein of unknown function compare
PP_2365 +0.5 2.0 Transcriptional regulator, AraC family compare
PP_2127 +0.5 2.4 Sensor histidine kinase compare
PP_1454 +0.5 1.2 conserved protein of unknown function compare
PP_3829 +0.5 1.4 Molybdenum transport system permease protein ModB compare
PP_2055 +0.5 1.2 putative isomerase compare
PP_2804 +0.4 1.4 Hydrolase, alpha/beta fold family compare
PP_3064 +0.4 0.6 Phage tail protein compare
PP_3808 +0.4 0.6 Antibiotic synthesis protein MbtH compare
PP_5485 +0.4 2.1 putative N-acetyltransferase, GNAT domain compare
PP_0784 +0.4 2.0 conserved protein of unknown function compare
PP_0958 +0.4 2.4 phospholipid ABC transporter ATP-binding subunit compare
PP_2646 +0.4 1.5 conserved protein of unknown function compare
PP_5556 +0.4 1.8 putative bacteriophage lysis protein compare
PP_1114 +0.4 1.7 SEC-C domain protein compare
PP_0616 +0.4 2.2 Branched-chain amino acid ABC transporter, ATP binding protein compare
PP_2883 +0.4 0.6 conserved protein of unknown function compare
PP_2046 +0.4 1.5 Transcriptional regulator, LysR family compare
PP_1068 +0.4 1.2 glutamate / aspartate ABC transporter - ATP binding subunit compare
PP_3164 +0.4 2.3 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase compare
PP_2014 +0.4 2.0 conserved membrane protein of unknown function compare
PP_3346 +0.4 1.0 Nickel transporter ATP-binding protein compare
PP_3488 +0.4 2.1 Sco1/SenC family protein compare
PP_4238 +0.4 1.5 conserved protein of unknown function compare
PP_2360 +0.4 1.4 putative type 1 pili subunit CsuA/B protein compare
PP_1317 +0.4 2.0 Ubiquinol-cytochrome c reductase iron-sulfur subunit compare
PP_2511 +0.4 1.0 conserved protein of unknown function compare
PP_0643 +0.4 0.8 protein of unknown function compare
PP_5293 +0.4 1.6 conserved protein of unknown function compare
PP_4721 +0.4 1.9 conserved membrane protein of unknown function compare
PP_0951 +0.4 2.4 Ribosome hibernation promoting factor compare
PP_1322 +0.4 0.6 putative Lipoprotein compare
PP_4787 +0.4 1.3 putative protein with nucleoside triphosphate hydrolase domain compare
PP_3234 +0.4 1.2 Heat shock protein, HSP20 family compare
PP_2332 +0.4 2.5 conserved exported protein of unknown function compare
PP_0142 +0.4 1.9 putative ABC transporter, permease protein compare
PP_4792 +0.4 1.3 conserved exported protein of unknown function compare
PP_4664 +0.4 2.8 Transcriptional regulator, LysR family compare
PP_5233 +0.4 2.4 ammonium transporter AmtB compare
PP_0910 +0.4 2.6 conserved exported protein of unknown function compare
PP_1021 +0.4 2.1 DNA-binding transcriptional regulator compare
PP_5648 +0.4 0.9 conserved exported protein of unknown function compare
PP_4406 +0.4 1.7 conserved protein of unknown function compare
PP_1307 +0.4 1.4 AsnC family transcriptional regulator compare
PP_3239 +0.4 0.7 putative cointegrate resolution protein T Tn4652 compare
PP_2452 +0.4 1.8 conserved protein of unknown function compare
PP_2583 +0.4 2.0 Acetyltransferase, GNAT family compare
PP_5707 +0.4 1.3 conserved protein of unknown function compare
PP_5684 +0.4 2.1 protein of unknown function compare
PP_3802 +0.4 1.6 putative Cation ABC transporter, ATP-binding protein compare
PP_4545 +0.4 1.6 beta-ketodecanoyl-(Acyl-carrier-protein) synthase compare
PP_4819 +0.4 2.2 conserved protein of unknown function compare
PP_4568 +0.4 1.6 putative metabolite efflux pump compare
PP_0167 +0.4 3.3 Toxin secretion ATP-binding protein compare
PP_0236 +0.4 0.8 NAD(P)H-dependent FMN reductase subunit compare
PP_3928 +0.4 1.6 conserved exported protein of unknown function compare
PP_2678 +0.4 2.3 putative Hydrolase compare
PP_1718 +0.4 2.3 putative diguanylate phosphodiesterase containing EAL domain compare
PP_5359 +0.4 0.7 CobW/P47K family protein compare
PP_1236 +0.4 1.5 putative Glycine cleavage system transcriptional repressor compare
PP_1300 +0.4 1.1 putative amino acid ABC transporter - ATP-binding subunit compare
PP_1824 +0.4 0.8 Smr domain protein compare
PP_2600 +0.4 2.6 conserved protein of unknown function compare
PP_1147 +0.4 1.2 conserved protein of unknown function compare
PP_1181 +0.4 1.6 DNA-binding response regulator compare
PP_3932 +0.4 2.2 Diguanylate cyclase compare
PP_3294 +0.4 0.9 Universal stress protein family compare
PP_1062 +0.4 0.8 MutT/nudix family protein compare
PP_t49 +0.4 1.1 tRNA-Met compare
PP_3480 +0.4 1.3 conserved protein of unknown function compare
PP_2210 +0.4 1.3 LysR family transcriptional regulator compare
PP_5681 +0.4 2.3 conserved protein of unknown function compare
PP_4925 +0.4 1.3 conserved protein of unknown function compare
PP_3077 +0.4 1.5 putative ABC transporter permease protein compare
PP_2029 +0.4 0.6 von Willebrand factor type A domain protein compare
PP_1487 +0.4 2.3 conserved protein of unknown function compare
PP_0424 +0.4 1.6 DNA-binding transcriptional dual regulator compare
PP_1999 +0.4 0.9 membrane protein required for colicin V production compare
PP_3806 +0.4 0.8 Hydrolase, isochorismatase family compare
PP_5170 +0.4 1.8 sulfate ABC transporter, inner membrane subunit CysT compare
PP_2528 +0.4 2.8 O-acetylhomoserine (thiol)-lyase compare
PP_3585 +0.4 2.0 multidrug efflux transport system - putative membrane fusion protein compare
PP_2147 +0.4 1.7 conserved exported protein of unknown function compare
PP_0882 +0.4 2.2 dipeptide ABC transporter - periplasmic binding protein compare
PP_4409 +0.4 1.3 Site-specific recombinase, phage integrase family compare
PP_0962 +0.4 1.5 toluene-tolerance protein compare
PP_5337 +0.4 1.4 LysR family transcriptional regulator compare
PP_3880 +0.4 0.5 conserved exported protein of unknown function compare
PP_4670 +0.4 2.6 diguanylate cyclase compare
PP_1691 +0.4 0.7 conserved protein of unknown function compare
PP_3245 +0.4 0.7 conserved protein of unknown function compare
PP_0886 +0.4 1.6 conserved exported protein of unknown function compare
PP_3368 +0.4 1.9 Major facilitator family transporter compare
PP_4196 +0.4 0.4 conserved exported protein of unknown function compare
PP_1381 +0.4 0.9 4-carboxymuconolactone decarboxylase compare
PP_2603 +0.4 1.5 conserved protein of unknown function compare
PP_3625 +0.4 1.9 Transporter, LysE family compare
PP_1808 +0.4 0.9 glucose-6-phosphate isomerase compare
PP_5735 +0.4 1.2 conserved hypothetical protein compare
PP_0352 +0.4 1.4 RNA polymerase sigma-70 factor, ECF subfamily compare
PP_2050 +0.4 2.0 conserved protein of unknown function compare
PP_1396 +0.4 1.4 conserved protein of unknown function compare


Specific Phenotypes

None in this experiment

For Pseudomonas putida KT2440 in stress experiments

For stress Poly(3-hydroxybutyric acid) across organisms